Publikationen 1998

Department of Biogeochemistry

Arnosti, C., Sagemann, J., Jørgensen, B. B., Thamdrup, B.: Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction. Marine Ecology Progress Series 165:59-70 (1998). MEPS Full Text

Boehme, S. E., Sabine, C. L., Reimers, C. E.: CO₂ fluxes from a coastal transect: a time series approach. Marine Chemistry 63:49-67 (1998). ScienceDirect

Böttcher, M. E.: Isotope fractionation (S, O) during the microbial sulfate reduction in marine sediments: A comparison of nature and experiment (in German). Erlanger Geol. Abh., Sonderband 2:11-12 (1998).

Böttcher, M. E.: Manganese (II) partitioning during experimental precipitation of rhodochrosite-calcite solid solutions from aqueous solutions. Marine Chemistry 62:287-297 (1998). ScienceDirect

Böttcher, M. E.: Manganese (II) partitioning during formation of MnCO₃-CaCO₃solid solutions in suboxic aqueous solutions. Mineralogical Magazine 62A:203-204 (1998). Full Text

Böttcher, M. E., Brumsack, H.-J., de Lange, G. J.: 29. Sulfate reduction and related stable isotope (³⁴S, ¹⁸O) variations in interstitial waters from the Eastern Mediterranean. Proceedings of the Ocean Drilling Program, Scientific Results 160:365-373 (1998). ODP Full Text

Böttcher, M. E., Mart, Y., Brumsack, H.-J.: 35. Data Report: Geochemistry of Pliocene and Miocene carbonates from the Eratosthenes Seamount (Site 965). Proceedings of the Ocean Drilling Program, Scientific Results 160:447-451 (1998). ResearchGate

Böttcher, M. E., Neretin, L. N., Lepland, A., Jørgensen, B. B.: Isotopen-Biogeochemie des Schwefelkreislaufs in Sedimenten des Schwarzen Meeres und der Ostsee. Terra Nostra 3:35-36 (1998).

Böttcher, M. E., Oelschläger, B.: Stable sulfur isotope partitioning in permeable tidal sediments under non-steady state conditions. Mineralogical Magazine 62 A:205-206 (1998).

Böttcher, M. E., Oelschläger, B., Höpner, T., Brumsack, H.-J., Rullkötter, J.: Sulfate reduction related to the early diagenetic degradation of organic matter and "black spot" formation in tidal sandflats of the German Wadden Sea (southern North Sea): Stable isotope (¹³C, ³⁴S, ¹⁸O) and other geochemical results. Organic Geochemistry 29(5-7):1517-1530 (1998). ScienceDirect

Böttcher, M. E., Parafiniuk, J.: Methane-derived carbonates in a native sulfur deposit: stable isotope and trace element discriminations related to the transformation of aragonite to calcite. Isotopes Environmental Health Studies 34:177-190 (1998). PubMed

Böttcher, M. E., Smock, A. M., Cypionka, H.: Sulfur isotope fractionation during experimental precipitation of iron (II) and manganese (II) sulfide at room temperature. Chemical Geology 146:127-134 (1998). ScienceDirect

Brüchert, V.: Early diagenesis of sulfur in estuarine sediments: The role of sedimentary humic and fulvic acids. Geochimica et Cosmochimica Acta 62(9):1567-1586 (1998). NASA

Canfield, D. E., Thamdrup, B., Fleischer, S.: Isotope fractionation and sulfur metabolism by pure and enrichment cultures of elemental sulfur disproportionating bacteria. Limnology and Oceanography 43:253-264 (1998).

Cypionka, H., Smock, A. M., Böttcher, M. E.: A combined pathway of sulfur compound disproportionation in Desulfovibrio desulfuricans. FEMS Microbiology Letters 166:181-186 (1998). ScienceDirect Full Text

Finster, K., Liesack, W., Thamdrup, B.: Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov. , a new anaerobic bacterium isolated from marine surface sediment. Applied and Environmental Microbiology 64(1):119-125 (1998). PubMed Full Text

Greeff, O., Glud, R. N., Holby, O., Gundersen, J. K., Jørgensen, B. B.: A benthic lander for tracer studies in the sea bed: in situ measurements of sulfate reduction. Continental Shelf Research 18, 1581-1594 (1998). ScienceDirect

Huettel, M., Ziebis, W., Forster, S., Luther III., G.: Advective transport affecting metal and nutrient distribution and interfacial fluxes in permeable sediments. Geochimica et Cosmochimica Acta 62(4):613-631 (1998). ScienceDirect

Khalili, A.., Basu, A. J., Pietrzyk, U.: Flow visualization in porous media via Positron Emission Tomography. Physical Fluids 10(4):1031-1033 (1998). AIP

Khalili, A., Shivakumara, I. S.: Onset of convection in a porous layer with net through-flow and internal heat generation. Physical Fluids 10(1):315-319 (1998). AIP

Komada, T., Reimers, C. L., Boehme, S. E.: Dissolved inorganic carbon profiles and fluxes determined using pH and P_CO2 microelectrodes. Limnology and Oceanography 43(5):769-781 (1998). OSU Full Text

Neretin, L. N., Böttcher, M. E., Volkov, I.I.: The stable isotopic composition of sulphur species in the Black Sea water column. Mineralogical Magazine 62A:1075-1076 (1998). Full Text

Passier, H. F., Böttcher, M. E., de Lange, G. J.: Sulphur isotope partitioning during formation of pyrite and incorporation of sulphur into organic matter in eastern Mediterranean sapropels. Mineralogical Magazine 62A:1143-1144 (1998). ResearchGate Full Text

Pufahl, P. K., Maslin, M. A., Anderson, L., Brüchert, V., Jansen, F., Lin, H., Perez, M., Vidal, L.: 18. Lithostratigraphic summary for Leg 175: Angola-Benguela upwelling system, Vol. 175. In: Proc. ODP, Init. Repts., Vol. 175. pp. 533-542, G. Wefer, W. H. Berger, C. Richter (eds.). Ocean Drilling Program, College Station, TX (1998). ODP Full Text

Rozanov, A. G., Neretin, L. N., Volkov, I.I.: Redox nepheloid layer (RNL) of the Black Sea: its location, composition and origin. In: Ecosystem modeling as a management tool for the Black Sea, Vol. I. pp. 77-92, L. J. Ivanov & T. Oguz (eds.), Kluwer, Amsterdam (1998).

Rusch, A.., Töpken, H., Böttcher, M. E., Höpner, T.: Recovery from black spots: results of a loading experiment in the Wadden Sea. Journal of Sea Research 40:205-219 (1998). ScienceDirect

Rysgaard, S., Thamdrup, B., Risgaard-Petersen, N., Fossing, H., Berg, P., Christensen, P. B., Dalsgaard, T.: Seasonal carbon and nutrient mineralization in a high-Arctic coastal marine sediment, Young Sound, Northeast Greenland. Marine Ecology Progress Series 175:261-276 (1998). Full Text

Sagemann, J., J&osloash;rgensen, B. B., Greeff, O.: Temperature dependence and rates of sulfate reduction in cold sediments of Svalbard, Arctic Ocean. Geomicrobiology Journal 15:85-100 (1998). TFO

Schubert, C. J., Villanueva, J., Calvert, S. E., Cowie, G.L., von Rad, U., Schulz, H., Berner, U., Erlenkeuser, H.: Stable phytoplankton community structure in the Arabian Sea over the past 200,000 years. Nature 394:563-566 (1998). Nature

Smock, A. M., Böttcher, M. E., Cypionka, H.: Fractionation of sulfur isotopes during thiosulfate reduction by Desulfovibrio desulfuricans. Archives of Microbiology 169:460-463 (1998). PubMed

Smock, A. M., Böttcher, M. E., Cypionka, H.: A combined pathway of sulphur compound disproportionation by a sulfate-reducing bacterium (Desulfovibrio desulfuricans): Evidence from stable sulphur isotopes. Mineralogical Magazine 62A:1423-1424 (1998). Full Text

Teske, A., Ramsing, N. B., Habicht, K., Fukui, M., Kuever, J., Jørgensen, B. B., Cohen, Y.: Sulfate-Reducing Bacteria and their Activities in Cyanobacterial Mats of Solar Lake (Sinai, Egypt). Applied and Environmental Microbiology 64(8):2943-2951 (1998). PubMed Full Text

Thamdrup, B., Fleischer, S.: Temperature dependence of oxygen respiration, nitrogen mineralization, and nitrification in Arctic sediments. Aquatic Microbial Ecology 15:191-199 (1998). ResearchGate

Thamdrup, B., Hansen, J. W., Jørgensen, B. B.: Temperature dependence of aerobic respiration in a coastal sediment. FEMS Microbiology Ecology 25:189-200 (1998). ScienceDirect Full Text

Contribution in collected edition

Vidal, L., Brüchert, V. and Shipboard Scientific Party: 23. Regional and stratigraphic variation in color reflectance of sediments from Leg 175. In: Proc. ODP, Init. Repts., Vol. 175. pp.569-577, G. Wefer, W. H. Berger, C. Richter (eds.), Ocean Drilling Program, College Station, TX (1998).

Diploma and Magister theses

Hoffman, F.: Die Bedeutung schwefeldisproportionierender Bakterien für den Schwefelkreislauf in marinen Sedimenten. Göttingen (1998).

Kaiser, J.: Schwefel-Isotopenaustausch und Disproportionierung bei Thiosulfat in chemischen und mikrobiellen Systemen. Diplomarbeit Universität Bremen, Bremen (1998).

Department of Microbiology

Aeckersberg, F., Rainey, F. A., Widdel, F.: Growth, natural relationships, cellular fatty acids and metabolic adaptation of sulfate-reducing bacteria that utilize long-chain alkanes under anoxic conditions. Archives of Microbiology 170:361-369 (1998). PubMed

Foß, S., Harder, J.: Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen containing monoterpenes (linalool, menthol, and eucalyptol) and nitrate. Systematic and Applied Microbiology 21:365-373 (1998). PubMed

Foß, S., Heyen, U., Harder, J.: Alcaligenes defragrans sp. nov., description of four strains isolated on alkenoic monoterpenes ((+)-menthene, Î±-pinene, 2-carene, and Î±-phellandrene) and nitrate. Systematic and Applied Microbiology 21:237-244 (1998). PubMed

Glud, N.R., Santegoeds C.M., De Beer D., Kohls O., Ramsing N.B.: Oxygen dynamics at the base of a biofilm studied with planar optodes. Aquatic Microbial Ecology 14:223-233 (1998). ResearchGate

Heyen, U., Harder, J.: Cometabolic isoterpinolene formation from isolimonene by denitrifying Alcaligenes defragrans. FEMS Microbiology Letters 169:67-71 (1998). Wiley Full Text

Straub, K. L., Buchholz-Cleven, B. E. E.: Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments. Applied and Environmental Microbiology 64(12):4846-4856 (1998). PubMed Full Text

Straub, K. L., Hanzlik, M., Buchholz-Cleven, B. E. E.: The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria. Systematic and Applied Microbiology 21:442-449 (1998). PubMed

Habilitation

Harder, J.: Anaerobe Oxidation von isoprenoiden Naturstoffen und Methan durch Bakterien. Habilitationsschrift Universität Bremen, Bremen (1998), 212pp.

Ph.D theses

Foß, S.: Mikrobieller Abbau isopernoider Naturstoffe: Anaerobe Oxidation von Monoterpenen durch nitratreduzierende Bakterien. Cuvillier Verlag, Göttingen, zugleich Dissertation Universität Bremen, Bremen (1998), 148pp.

Harms, G.: Anaerober Abbau von p-Cymen und anderen Dialkylbenzenen durch neu isolierte Bakterienarten. Bremen (1998).

Diploma theses

Kniemeyer, O.: Anaerober Abbau von Cholesterin durch das denitrifizierende Bakterium 72Chol. Bremen (1998).

Ioannidis, I.: Reinigung und Charakterisierung der 1,2-Cyclohexandion umsetzenden Enzymaktivität aus Azoarcus sp. Stamm 22Lin. Diplomarbeit Universität Bremen, Bremen (1998).

Molecular Ecology Group

Amann, R., Kühl, M.: In situ methods for assessment of microorganisms and their activities. Current Opinion in Microbiology 1:352-358 (1998). PubMed

Amann, R., Lemmer, H., Wagner, M.: Monitoring the community structure of wastewater treatment plants: A comparison of old and new techniques. FEMS Microbiology Ecology 25:205-215 (1998). Wiley Full Text

Brinkhoff, T., Santegoeds, C. M., Sahm, K., Kuever, J., Muyzer, G.: A polyphasic approach to study the diversity and vertical distribution of sulfur-oxidizing Thiomicrospira species in coastal sediments of the German Wadden Sea. Applied and Environmental Microbiology 64(12):4650-4657 (1998). PubMed Full Text

Chatzinotas, A., Sandaa, R. A., Schönhuber, W., Amann, R., Daae, F. L., Torsvik, J., Zeyer, J., Hahn, D.: Analysis of broad-scale differences in microbial community composition of two pristine forest soils. Systematic and Applied Microbiology 21:579-587 (1998). PubMed

Dubilier, N., Windoffer, R., Giere, O.: Ultrastructure and stable carbon isotope composition of the hydrothermal vent mussels Bathymodiolus brevior and B. Sp affinis brevior from the north Fiji basin, Western Pacific. Marine Ecology Progress Series 165:187-193 (1998). ResearchGate

Fuchs, B. M., Wallner, G., Beisker, W., Schwippl, I., Ludwig, W., Amann, R.: Flow Cytometric Analysis of the In Situ Accessibility of Escherichia coli 16 S rRNA for Fluorescently Labeled Oligonucleotide Probes. Applied and Environmental Microbiology 64(12):4973-4982 (1998). PubMed Full Text

Garcia-Pichel, F., Nuebel, U., Muyzer, G.: The phylogeny of unicellular, extremely halotolerant cyanobacteria. Archives of Microbiology 169:469-482 (1998). PubMed

Glöckner, F. O., Babenzien, H.-D., Amann, R.: Phylogeny and identification in situ of Nevskia ramosa. Applied and Environmental Microbiology 64(5):1895-1901 (1998). PubMed Full Text

Llobet-Brossa, E., Rosselló-Mora, R., Amann, R.: Microbial community composition of Wadden Sea sediments as revealed by Fluorescence in situ Hybridization. Applied and Environmental Microbiology 64(7):2691-2696 (1998). PubMed Full Text

Muyzer, G.: Structure, function and dynamics of microbial communities. The molecular biological approach. In: Advances in Molecular Ecology. pp.87-117, G. R. Carvalho (ed.). IOS Press, Amsterdam, NATO Science Series A 306 (1998). Full Text

Muyzer, G., Smalla, K.: Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73:127-141 (1998). PubMed

Neef, A., Amann, R., Schlesner, H., Schleifer, K.-H.: Monitoring a widespread bacterial group: in situ detection of Planctomycetes with 16S rRNA-targeted probes. Microbiology 144:3257-3266 (1998). PubMed Full Text

Pernthaler, J., Glöckner, F. O., Unterholzner, S., Alfreider, A., Psenner, R., Amann, R.: Seasonal community and population dynamics of pelagic Bacteria and Archaea in a high mountain lake. Applied and Environmental Microbiology 64(11):4299-4306 (1998). NCBI Full Text

Sahm, K., Berninger, U.-G.: Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments (Svalbard, Arctic Ocean). Marine Ecology Progress Series 165:71-80 (1998). ResearchGate

Santegoeds, C. M., Ferdelman, T G., Muyzer, G., de Beer, D.: Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms. Applied and Environmental Microbiology 64(10):3731-3739 (1998). PubMed Full Text

Santegoeds, C. M., Muyzer, G., de Beer, D.: Biofilm dynamics studied with microsensors and molecular techniques. Water Science and Technology 37(4-5):125-129 (1998). ScienceDirect Full Text

Schramm, A., Amann, R.: In situ structure and function analysis of biofilms. In: Technik anaerober Prozesse. pp.45-54, H. Märkl & R. Stegmann (eds.), DECHEMA, Frankfurt/M. (1998).

Schramm, A., de Beer, D., van den Heuvel, H. , Ottengraf, S., Amann, R.: In situ structure/Function studies in wastewater treatment systems. Water Science and Technology 37(4-5):413-416 (1998). ScienceDirect Full Text

Schramm, A., de Beer, D., Wagner, M., Amann, R.: Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Applied and Environmental Microbiology 64(9):3480-3485 (1998). PubMed Full Text

Sorokin, D. Y., Muyzer, G., Brinkhoff, T., Kuenen, J. G., Jetten, M. S. M.: Isolation and characterization of a novel facultatively alkaliphilic Nitrobacter species, N. alkalicus sp. nov. Archives of Microbiology 170, 345-352 (1998). PubMed

Spring, S., Lins, U., Amann, R., Schleifer, K.-H., Ferreira, L. C. S., Esquivel, D. M. S., Farina, M.: Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusual large magnetosomes. Archives of Microbiology 169:136-147 (1998). PubMed

Stoffels, M., Amann, R., Ludwig, W., Hekmat, D., Schleifer, K.-H.: Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. Applied and Environmental Microbiology 64(3):930-939 (1998). PubMed Full Text

Wichels, A., Biel, S. S., Gelderblom, H. R., Brinkhoff, T., Muyzer, G., Schütt, C.: Bacteriophage diversity in the North Sea. Applied and Environmental Microbiology 64(11):4128-4133 (1998). PubMed Full Text

Wirsen, C. O., Brinkhoff, T., Kuever, J., Muyzer, G., Molyneaux, S., Jannasch, H. W.: Comparison of a New Thiomicrospira Strain From the Mid-Atlantic Ridge With Known Hydrothermal Vent Isolates. Applied and Environmental Microbiology 64(10):4057-4059 (1998). PubMed Full Text

Zwart, G., Huismans, R., van Agterveld, M. , van de Peer, Y. , Rijk, P. de, Eenhorn, H., Muyzer, G., van Hannen, E. , Gons, H., Laanbroek, R.: Divergent members of the bacterial division Verrucomicrobiales in a termperate freshwater lake. FEMS Microbiology Ecology 25:159-169 (1998). Wiley Full Text

Contribution in collected edition

Wagner, M, Hutzler, P., Amann, R.: Chapter 17. Three dimensional analysis of complex microbial communities by combining confocal laser scanning microscopy and fluorescence in situ hybridization. In: Digital image analysis of microbes: imaging, morphometry, fluometry and motility techniques and applications. pp.467-486, M. H. F. Wilkinson, F. Schut (eds.), John Wiley and Sons Ltd., Chichester/UK (1998).

Diploma thesis

Schäfer, H.: Sukzessive Veränderungen der Diversität mariner, mikrobieller Populationen, bestimmt durch 16 S rDNA Klonbibliotheken und denaturierende Gradienten Gelelektrophorese (DGGE). Bremen (1998).

Ph.D. theses

Brinkhoff, T.: Investigation of the ecological relevance of sulfur-oxidizing bacteria of the genus Thiomicrospira in marine habitats with molecular biological and microbiological techniques. Dissertation Universität Bremen, Bremen (1998), 216pp.

Fuchs, B. M.: Entwicklung von durchflußzytometischen Methoden zur Analyse der Diversität und Struktur mikrobieller Lebensgemeinschaften des Wassers. Dissertation Technische Universität München, München (1998), 129pp.

Glöckner, F. O.: Phylogenie und in situ Identifizierung von Prokaryonten in limnischen und marinen Ökosystemen. Dissertation Technische Universität München, München (1998), 147pp.

Schönhuber, W.: Entwicklung und Anwendung von in situ-Hybridisierungsmethoden für Cyanobakterien. 1. Aufl. Hartung Gorre Verlag, Konstanz 1999, zugleich Dissertation Technische Universität München, München (1998), 134pp.

Schramm, A.: In Situ Structure and Function Analysis of Nitrifying/Denitrifying Biofilms. Dissertation Universität Bremen, Bremen (1998), 109pp.