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- Publikationen 2000
Publikationen 2000
Publikationen 2000
Department of Biogeochemistry
| Arnosti, C.: Substrate specificity in polysaccharide hydrolysis: Contrasts between bottom water and sediments. Limnology and Oceanography 45(5):1112-1119 (2000). ASLO Full Text |
| Boetius, A. and K. Lochte: Regional variation of total microbial biomass in sediments of the deep Arabian Sea. Deep-Sea Research II 47:149-168 (2000). ScienceDirect |
| Boetius, A., T. Ferdelman and K. Lochte: Bacterial activity in sediments of the deep Arabian Sea in relation to vertical flux. Deep Sea Research II 47:2835-2875 (2000). ScienceDirect |
| Boetius, A., B. Springer and C. Petry: Microbial activity and particulate matter in the benthic nepheloid layer (BNL) of the deep Arabian Sea. Deep Sea Research II 47:2687-2706 (2000). ScienceDirect |
| Boetius, A., K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B. B. Jorgensen, U. Witte and O. Pfannkuche: A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407:623-626 (2000). PubMed |
| Böttcher, M. E.: Stable isotope fractionation during experimental formation of Norsethite (BaMg[CO3]2): A mineral analogue of Dolomite. Aquatic Geochemistry 6:201-212 (2000). Springer |
| Böttcher, M. E. and A. Lepland: Biogeochemistry of sulfur in a sediment core from the west-central Baltic Sea: Evidence from stable isotopes and pyrite textures. Journal of Marine Systems 25:299-312 (2000). ScienceDirect |
| Böttcher, M. E., H. Schale, B. Schnetger, K. Wallmann and H.-J. Brumsack: Stable sulfur isotopes indicate net sulfate reduction in near-surface sediments of the deep Arabian Sea. Deep-Sea Research II 47:2769-2783 (2000). ScienceDirect |
| Böttcher, M. E., B. Hespenheide, E. Llobet-Brossa, C. Beardsley, O. Larsen, A. Schramm, A. Wieland, G. Böttcher, U.-G. Berninger and R. Amann: The biogeochemistry, stable isotope geochemistry and microbial community structure of a temperate intertidal mudflat: An integrated study. Continental Shelf Research 20:1749-1769 (2000). ScienceDirect |
| Boudreau, B. P. and B. B. Jørgensen : The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford University Press (2000), 415pp. Wiley |
| Boudreau, B. P. and B. B. Jørgensen: Chapter 9. Diagenesis and sediment-water exchange. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.211-244, B. P. Boudreau & B. B. Jørgensen (eds.), Oxford University Press (2000). Full Text |
| Brüchert, V., M. E. Pérez and C. B. Lange: Coupled primary production, benthic foraminiferal assemblage, and sulfur diagenesis in organic-rich sediments of the Benguela upwelling system. Marine Geology. 163:27-40 (2000). ScienceDirect |
| Christiansen, B. and A. Boetius: Mass sedimentation of the swimming crab Charybdis smithii (Crustacea: Decapoda) in the deep Arabian Sea. Deep Sea Research II 47:2673-2685 (2000). ScienceDirect |
| Elberling, B., A. Schippers and W. Sand: Bacterial and chemical oxidation of pyritic mine tailings at low temperatures. Journal of Contaminant Hydrology 41:225-238 (2000). ScienceDirect |
| Fossing, H., T. G. Ferdelman and P. Berg: Sulfate reduction and methane oxidation in continental margin sediments influenced by irrigation (South-East Atlantic off Namibia). Geochimica et Cosmochimica Acta 64(5):897-910 (2000). ScienceDirect |
| Hansen, J. W., B. Thamdrup and B. B. Jørgensen: Anoxic incubation of sediment in gas-tight plastic bags: A method for biogeochemical process studies. Marine Ecology Progress Series 208:273-282 (2000). MEPS Full Text |
| Jørgensen, B. B.: 5. Bacteria and marine biogeochemistry. pp.173-207, In: Marine Geochemistry. H. D. Schulz & M. Zabel (eds.), Springer, Berlin (2000). Springer |
| Jørgensen, B. B.: Chapter 14. Life in the diffusive boundary layer. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.348-373, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text |
| Kasten, S. and B. B. Jørgensen: 8. Sulfate reduction in marine sediments. pp. 263-281, In: Marine Geochemistry. H. D. Schulz & M. Zabel (eds.). Springer, Berlin (2000). Springer |
| Larsen, O. and C. B. Koch: Application of 57Fe-enriched synthetic ferrihydrite to speciate the product of bacterial reduction. Hyperfine Interactions 126:225-234 (2000). Springer |
| Lochte, K., A. Boetius and C. Petry: Microbial food webs under severe nutrient limitations: life in the deep sea. In: Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology. Atlantic Canada Society for Microbial Ecology. pp.95-102, C. R. Bell, M. Brylinsky & P. Johnson-Green (eds.). Halifax/Canada (2000). Full Text |
| Oldenburg, T. B. P., J. Rullkötter, M. E. Böttcher and A. Nissenbaum: Molecular and isotopic characterization of organic matter in recent and sub-recent sediments from the Dead Sea. Organic Geochemistry 31:251-265 (2000). ScienceDirect |
| Oldenburg, T. B. P., J. Rullkötter, M. E. Böttcher and A. Nissenbaum: Addendum to "Molecular and isotopic characterization of organic matter in recent and sub-recent sediments from the Dead Sea."[Organic Geochemistry 31:251-265 (2000)] Organic Geochemistry 31:773-774 (2000). ResearchGate |
| Schippers, A., P.-G. Jozsa and W. Sand: Microbiological pyrite oxidation in a mine tailings heap and its relevance to the death of vegetation. Geomicrobiology Journal 17:151-162 (2000). TFO |
| Schubert, C. J. and B. Nielsen: Effects of decarbonation treatments on δ13C values in marine sediments. Marine Chemistry 72:55-59 (2000). ScienceDirect |
| Schubert, C. J., T. Ferdelman and B. Strotmann: Organic matter composition and sulfate reduction rates in sediments off Chile. Organic Geochemistry 31:351-361 (2000). ScienceDirect |
| Schulz, H. N. and D. Riechmann: Thiomargarita namibiensis: Ein Gigant mit langem Atem. BioSpektrum 6:116-117 (2000). Full Text |
| Schulz, H. N., B. Strotmann, V. A. Gallardo and B. B. Jørgensen: Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepcion, Chile. Marine Ecology Progress Series 200:117-126 (2000). MEPS Full Text |
| Thamdrup, B., R. Rosselló-Mora and R. Amann: Microbial manganese and sulfate reduction in Black Sea shelf sediments. Applied and Environmental Microbiology 66(7):2888-2897(2000). NCBI Full Text |
| Riechmann, D.: Nitratspeichernde Schwefelbakterien und ihre Bedeutung in den Auftriebsgebieten vor der Küste Chiles und Namibias. Göttingen (2000). |
| Scheuner, M.: Erfassung des qualitativen und quantitativen Abbaus von organischen Substanzen unter verschiedenen Redoxbedingungen. Bremen (2000). |
| Zopfi, J.: Sulfide oxidation and speciation of sulfur intermediates in marine environments. Dissertation Universität Bremen, Bremen (2000), 135pp. |
Flux Group
| Chakraborty, B. B., D. Khattar and A. Khalili: Effect of rotation on stability of suspended sediments. Physics of Fluids 12(11):3074-3077 (2000). AIP |
| Dando, P. R., S. Aliani, H. Arab, C. N. Bianchi, M. Brehmer, S. Cocito, S. W. Fowler, J. Gundersen, L. E. Hooper, R. Kölbl, J. Kuever, P. Linke, K. C. Makropoulos, R. Meloni, J. C. Miquel, C. Morri, S. Müller, C. Robinson, H. Schlesner, S. Sievert, R. Stöhr, D. Stüben, M. Thomm, S. P. Varnavas and W. Ziebis: Hydrothermal studies in the Aegean Sea. Physics & Chemistry of the Earth Part B-Hydrology Oceans & Atmosphere 25(1):1-8 (2000). ScienceDirect |
| Huettel, M. and A. Rusch: Transport and degradation of phytoplankton in permeable sediment. Limnology and Oceanography 45(3):534-549 (2000). ASLO Full Text |
| Huettel, M. and I.T. Webster: Chapter 7. Porewater flow in permeable sediment. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.144-179, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text |
| Janßen, F., T. Treude and U. Witte: Scavenger assemblages under differing trophic conditions: a case study in the deep Arabian sea. Deep-Sea Research II 47:2999-3026 (2000). ScienceDirect |
| Khalili, A., A. J. Basu and J. Mathew: Eine neue implizierte Methode zur Berechnung von instationären und inkompressiblen Störungen. GWDG-Bericht Nr. 54:71-80 (2000). |
| Khalili, A., M. Huettel and W. Merzkirch: Chapter 3. Fine-scale flow measurements in the benthic boundary layer. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp. 44-77, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text |
| Rusch, A. and M. Huettel: Advective particle transport into permeable sediments - evidence from experiments in an intertidal sandflat. Limnology and Oceanography 45(3):525-533 (2000). ASLO Full Text |
| Turnewitsch, R., U. Witte and G. Graf: Bioturbation in the abyssal Arabian Sea: influence of fauna and food supply. Deep-Sea Research II 47:2877-2911 (2000). ScienceDirect |
| Wenzhöfer, F., O. Holby, R. N. Glud, H. K. Nielsen and J. Gundersen: In situ microsensor studies of a shallow water hydrothermal vent at Milos, Greece. Marine Chemistry 69:43-54 (2000). ScienceDirect |
| Witte, U.: Vertical distribution of metazoan macrofauna within the sediment at four sites with contrasting food supply in the deep Arabian Sea. Deep-Sea Research II 47:2979-2997 (2000). ScienceDirect |
| Witte, U. and O. Pfannkuche: High rates of benthic carbon remineralisation in the abyssal Arabian Sea. Deep-Sea Research II 47:2785-2804 (2000). ScienceDirect |
| Köbrich, M.: Einfluss mikrobieller exopolymerer Substanzen auf die Permeabilität mariner Sedimente. Bremen (2000). |
| Treude, T.: Community structure and metabolism of scavenging amphipods in the deep Arabian Sea. Kiel (2000). |
| Rusch, A.: Dynamik der Feinfraktion im Oberflächenhorizont permeabler Schelfsedimente. Berichte aus dem Fachbereich Geowissenschaften der Universität Bremen Nr. 155, Dissertation Universität Bremen, Bremen (2000), 116pp. |
Microsensor Group
| de Beer, D. and M. Kühl: Interfacial microbial mats and biofilms. The benthic boundary layer, chapter 15, page 374 - 394. Full Text |
| de Beer, D., M. Kühl, N. Stambler and L. Vaki: A microsensor study of light enhanced Ca2+ uptake and photosynthesis in the reef-building hermatypic coral Favia sp. Marine Ecology Progress Series 194:75-85 (2000). Full Text |
| Edwards, H. G. M., F. Garcia-Pichel, E. M. Newton and D. D. Wynn-Williams: Vibrational Raman spectroscopic study of scytonemin, the UV-protective cyanobacterial pigment. Spectrochimica Acta Part A-Molecular Spectroscopy 56:193-200 (2000). PubMed |
| Holst, G., I. Klimant, M. Kühl and O. Kohls: Optical microsensors and microprobes. In: Chemical sensors in Oceanography.pp.143-188, M. S. Varney (ed.). Amsterdam, OPA (2000). PubMed |
| Köhler-Rink, S. and M. Kühl: Microsensor studies of photosynthesis and respiration in larger symbiontic foraminifera. I. The physico-chemical microenvironment of Marginopora vertebralis, Amphistegina lobifera and Amphisorus hemprichii. Marine Biology 137:473-486 (2000). Springer |
| Liebsch, G., I. Klimant, B. Frank, G. Holst and O. S. Wolfbeis: Luminescence Lifetime Imaging of Oxygen, pH, and carbon dioxide distribution using optical sensors. Applied Spectroscopy 54(4):548-559 (2000). OSA |
| Portwich, A. and F. Garcia-Pichel: A novel prokaryotic UVB photoreceptor in the cyanobacterium Chlorogloeopsis PCC 6912. Photochemistry & Photobiology 71:493-498 (2000). PubMed |
| Wieland, A. and M. Kühl: Short-term temperature effects on oxygen and sulfide cycling in a hypersaline cyanobacterial mat (Solar Lake, Egypt). Marine Ecology Progress Series 196:87-102 (2000). Full Text |
| Wieland, A. and M. Kühl: Irradiance and temperature regulation of oxygenic photosynthesis and O2 consumption in a hypersaline cyanobacterial mat (Solar Lake, Egypt). Marine Biology 137:71-85 (2000). Springer |
| Zosgornik, H.: Interaktionen zwischen Cyanobakterien vom Stamm Aphanothece halophytica und aeroben heterotrophen Bakterien. Hochschule Anhalt (2000). |
| Portwich, A.F.M.: Die Biosynthese wasserlöslicher, UV-Schutzsubstanzen (MAAs) und ihre Regulation in Cyanobakterien. Dissertation Universität Bremen, Bremen (2000), 106pp. |
Department of Microbiology
Diploma theses| Amann, R., R. Rosselló-Mora and D. Schüler: Chapter 4. Phylogeny and in situ identification of magnetotactic bacteria. pp.47-60, In: Biomineralization of nano- and microstructures. E. Bäuerlein (ed.). Wiley-VCH, Weinheim (2000). Wiley |
| Bazylinski, D. A., A.J. Dean, D. Schüler, E. J.P. Phillips and D. R. Lovley: N2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter metallireducens and Magnetospirillum species. Environmental Microbiology 2(3):266-273 (2000). PubMed |
| Ehrenreich, P., A. Behrends, J. Harder and F. Widdel: Anaerobic oxidation of alkanes by newly isolated denitrifying bacteria. Archives of Microbiology 173:58-64 (2000). PubMed |
| Harder, J., U. Heyen, C. Probian and S. Foß: Anaerobic utilization of essential oils by denitrifying bacteria. Biodegradation 11:55-63 (2000). PubMed |
| Heyen, U. and J. Harder: Geranic acid formation, an initial reaction of anaerobic monoterpene metabolism in denitrifying Alcaligenes defragrans. Applied and Environmental Microbiology 66(7):3004-3009 (2000). PubMed Full Text |
| Schüler, D.: Die Biomineralisation von magnetischen Nanokristallen in magnetotaktischen Bakterien. BioSpektrum 6:445-449 (2000). Full Text |
| Schüler, D.: Chapter 8. Characterization of the magnetosome membrane in Magnetospirillum gryphiswaldense. In: Biomineralization of nano- and microstructures. pp.109-118, E. Bäuerlein (ed.), Wiley-VCH, Weinheim (2000). |
| Sievert, S. M., T. Heidorn and J. Kuever: Halothiobacillus kellyi sp. nov., a mesophilic obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea and emended description of the genus Halothiobacillus. International Journal of Systematic and Evolutionary Microbiology 50:1229-1237 (2000). PubMed Full Text |
| Sievert, S. M. and J. Kuever: Desulfacinum hydrothermale sp. nov., a thermophilic, sulfate-reducing bacterium from geothermally heated sediments near Milos Island (Greece). International Journal of Systematic and Evolutionary Bacteriology 50:1239-1246 (2000). PubMed Full Text |
| Sievert, S., J. Kuever and G. Muyzer: Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos island (Greece). Applied and Environmental Microbiology 66(7):3102-3109 (2000). PubMed Full Text |
| Sievert, S., W. Ziebis, J. Kuever and K. Sahm: Relative abundance of Archaea and Bacteria along a thermal gradient of a shallow-water hydrothermal vent quantified by rRNA slot-blot hybridization. Microbiology 146, 1287-1293 (2000). PubMed Full Text |
| Surkov, A. V., M. E. Böttcher and J. Kuever: Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis. Archives of Microbiology 174:448-451 (2000). PubMed |
| Wilkes H., C. Boreham, G. Harms, K. Zengler and R. Rabus: Anaerobic degradation and carbon isotopic fractionation of alkylbenzenes in crude oil by sulphate-reducing bacteria. Organic Geochemistry 31:101-115 (2000). ScienceDirect |
| Grünberg, K.: Untersuchungen zur mikroaeroben Kultivierung von M. gryphiswaldense sowie zur biochemischen Charakterisierung der Magnetosomenmembran. Bremen (2000). |
| Meinke, R.: Physiologische Untersuchungen zur Kälteanpassung bei chemolithoautotrophen schwefeloxidierenden Bakterien aus marinen Sedimenten. Bremen (2000). |
| Timke, M.: Initiale Reaktionen des Monoterpenstoffwechsels von Alcaligenes defragans. Bremen (2000). |
Molecular Ecology Group
| Amann, R.: Who is out there? Microbial aspects of biodiversity. Systematic and Applied Microbiology 23:1-8 (2000). PubMed |
| Amann, R.: Methoden zur Bestimmung der in situ-Funktion von Mikroorganismen. BioSpektrum 6:274-276 (2000). Full Text |
| Amann, R.: Methodological Aspects of fluorescence in situ hybridization. Bioscience Microflora 19(2):85-91 (2000). Full Text |
| Amann, R. and W. Ludwig: Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. FEMS Microbiology Reviews 24:555-565 (2000). PubMed Full Text |
| Amann, R., R. Rosselló-Mora, C. Flies and D. Schüler: Chapter 3. Phylogeny and in situ identification of magnetotactic bacteria. pp.47-60, In: Biomineralisation. 2nd edition., E. Bäuerlein (ed.), Wiley-VCH, Weinheim (2000). Wiley |
| Antón, J., R. Rosselló-Mora, F. Rodríguez-Valera and R. Amann: Extremely halophilic Bacteria in crystallizer ponds from solar salterns. Applied and Environmental Microbiology 66(7):3052-3057 (2000). PubMed Full Text |
| Brand, B. C., R. I. Amann, M. Steinert, D. Grimm and J. Hacker: Identification and in situ detection of intracellular bacteria in the environment. pp.601-624, In: Subcellular Biochemistry, Volume 33: Bacterial invasion into eukaryotic cells. T. A. Oelschlaeger and J. Hacker (eds.). Kluwer/Plenum, New York/USA (2000). PubMed |
| Casamayor, E. O., H. Schäfer, L. Baneras, C. Pedros-Alio, and G. Muyzer: Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 66(2):499-508 (2000). PubMed Full Text |
| Eilers, H., J. Pernthaler and R. Amann: Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Applied and Environmental Microbiology 66(1):4634-4640 (2000). NCBI Full Text |
| Eilers, H., J. Pernthaler, F. O. Glöckner and R. Amann: Culturability and in situ abundance of pelagic bacteria from the North Sea. Applied and Environmental Microbiology 66(7):3044-3051 (2000). ASM Full Text |
| Fuchs, B. M., F. O. Glöckner, J. Wulf and R. Amann: Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Applied and Environmental Microbiology 66(8):3603-3607 (2000). PubMed Full Text |
| Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill and R. Amann: Changes in community composition during dilution cultures of marine Bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environmental Microbiology 2(2):191-201 (2000). PubMed |
| Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler and R. Amann: Comparative 16S rRNA analysis of lake Bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Applied and Environmental Microbiology 66(11):5053-5065 (2000). ASM Full Text |
| Groben, R., G. J. Doucette, M. Kopp, M. Kodama, R. Amann and L. K. Medlin: 16S rRNA targeted probes for the identification of bacterial strains isolated from cultures of the toxic dinoflagellate Alexandrium tamarense. Microbial Ecology 39:186-196 (2000). PubMed |
| Head, I.M., N. D. Gray, H. D. Babenzien and F. O. Glöckner: Uncultured giant bacteria of the genus Achromatium. FEMS Microbiology Ecology 33:171-180 (2000). PubMed |
| Jurgens, G., F. O. Glöckner, R. Amann, A. Saano, L. Montonen, M. Likolammi and U. Münster: Identification of novel Archaea in Bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiology Ecology 34:45-56 (2000). PubMed |
| Krieger, J., O. Giere and N. Dubilier: Localization of RubisCO and sulfur in endosymbiotic bacteria of the gutless marine oligochaete Inanidrilus leukodermatus (Annelida). Marine Biology 137:239-244 (2000). Springer |
| Oerther, D. B., J. Pernthaler, A. Schramm, R. Amann and L. Raskin: Monitoring precursor 16S rRNAs of Acinetobacter spp. in activated sludge wastewater treatment systems. Applied and Environmental Microbiology 66(5):2154-2165 (2000). PubMed Full Text |
| Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jørgensen and R. Amann: Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments. Applied and Environmental Microbiology 66(8):3592-3602 (2000). PubMed Full Text |
| Weller, R., F.O. Glöckner and R. Amann: 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Systematic and Applied Microbiology 23:107-114 (2000). PubMed |
| Wickham, S., A. Gieseke and U.-G. Berninger: Benthic ciliate identification and enumeration: an improved methodology and its application. Aquatic Microbial Ecology 22:79-91 (2000). AME Full Text |
| Behrens, S.: Untersuchung der differentiellen Genexpression von Desulfotalea psychrophila. Bremen (2000). |
| Kolb, S.: Abundanz und vertikale Verteilung von sulfatreduzierenden und chemolithotrophen schwefeloxidierenden Bakterien in sandigen Wattenmeersedimenten. Göttingen (2000). |
| Peplies, J.: Gerichtete Isolierung von Proteobakterien aus der Nordsee und deren in situ-Nachweis. Bremen (2000). |
| Prilipp, A.: Charakterisierung von Ektosymbionten mariner Nematoden der Gattung Leptonemella und freilebender schwefel-oxidierender Bakterien anhand mikrobiologischer und molekularbiologischer Methoden. Bremen (2000). |
| Eilers, H.: Pelagische Bakteriengesellschaften in der Nordsee. Kultivierung, Diversität und in situ Dynamik. Dissertation Universität Bremen, Bremen (2000), 94pp. |
| Llobet-Brossa, E.: Microbial community structure and dynamics of Wadden Sea sediments (Dangast). Dissertation Universität Bremen, Bremen (2000), 131pp. |
| Ravenschlag, K.: Molekularbiologische Analyse der Diversität und Struktur mikrobieller Lebensgemeinschaften in marinen, arktischen Sedimenten (Svalbard). Dissertation Universität Bremen, Bremen (2000), 136pp. |