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34. Vi­ver T, Knit­tel K, Amann R, *Orellana LH. Deep long-read Me­ta­ge­no­mics se­quen­cing re­veals ni­che dif­fe­ren­tia­ti­on in car­bon cy­cling po­ten­ti­al bet­ween bent­hic and plank­to­nic mi­cro­bi­al po­pu­la­ti­ons. In review

33. Wil­kie I and *Orellana LH. Elu­si­ve ma­ri­ne Verrucomicrobiota: sea­so­nal­ly ab­un­dant mem­bers of the no­vel ge­ne­ra Seribacter and Chordibacter spe­cia­li­ze in de­gra­ding sul­fa­ted gly­cans. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy. 2024; 48:126562.

32. Sil­va-So­lar A, Vi­ver T, Wang Y, Orellana LH, Knit­tel K, Amann R. Aci­di­mi­cro­biia, the ac­tino­my­ce­to­ta of co­as­tal ma­ri­ne se­di­ments: Ab­un­dance, ta­xo­no­my and ge­no­mic po­ten­ti­al. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy. 2024; 47:126555.

31. Og­ge­rin M, Vi­ver T, Brüwer J, Voß D, Gar­cía-Llor­ca M, Zie­lin­ski O, Orellana LH, Fuchs BM. Ni­che dif­fe­ren­tia­ti­on wi­t­hin bac­te­ri­al key-taxa in stra­ti­fied sur­face wa­ters of the Sou­thern Pa­ci­fic Gyre. The ISME Jour­nal. 2024; 18:wra­e155

30. Brüwer JD, Sid­hu C, Zhao Y, Eich A, Röß­ler, Orellana LH, Fuchs BM. Glo­bal­ly oc­cur­ring pel­agi­pha­ge in­fec­tions crea­te ri­bo­so­me-de­pri­ved cells. Na­tu­re Com­mu­ni­ca­ti­ons. 2024;15-3715

29. Gon­zá­lez-Ma­drid G, Na­var­ro CA, Ace­ve­do-López J, Orellana LH, Je­rez CA. Pos­si­ble role of CHAD pro­te­ins in cop­per re­sis­tan­ce. Mi­cro­or­ga­nisms. 2024; 12:409

28. Ve­lo­so M, Wal­dis­perg A, Ar­row P, Ber­ríos-Pas­tén C, Acos­ta J, Col­que H, Va­ras MA, Al­len­de ML, Orellana LH, Mar­cole­ta AE. Di­ver­si­ty, Ta­xo­no­mic No­vel­ty, and En­coded Func­tions of Sa­lar de As­co­tán Mi­cro­bio­ta, as Re­vea­led by Me­ta­ge­no­me-As­sem­bled Ge­no­mes. Mi­cro­or­ga­nisms. 2024;11:2819

27. Ro­d­ri­guez-R LM, Con­rad RE, Vi­ver T, Feis­tel DJ, Lind­ner BG, Ven­ter SN, Orellana LH, et al. An ANI gap wi­t­hin bac­te­ri­al spe­cies that ad­van­ces the de­fi­ni­ti­ons of in­tra-spe­cies units. mBio. 2024;15:e02696-23.

26. Miksch S, Orellana LH, Og­ge­rin M, Vi­dal-Mel­go­sa S, So­lan­ki V, Hehe­mann JH, et al. Ta­xo­no­mic and func­tio­nal sta­bi­li­ty over­ru­les sea­so­na­li­ty in po­lar bent­hic mi­cro­bio­mes. ISME J. 2024;18:wra­d005

25. *Orellana LH, Krü­ger K, Sid­hu C, Amann R. Com­pa­ring ge­no­mes re­co­ve­r­ed from time-se­ries me­ta­ge­no­mes using long- and short-read se­quen­cing tech­no­lo­gies. Mi­cro­bio­me. 2023;11:105

24. Brüwer JD, Orellana LH, Sid­hu C, Klip HCL, Meu­nier CL, Bo­ers­ma M, et al. In situ cell di­vi­si­on and mor­ta­li­ty ra­tes of SAR11, SAR86, Bacteroidetes, and Aurantivirga du­ring phy­to­plank­ton blooms re­veal dif­fe­ren­ces in po­pu­la­ti­on con­trols. mSys­tems. 2023;8:e01287-22.

23. Zhang S-Y, Sutt­ner B, Ro­d­ri­guez-R LM, Orellana LH, Con­rad RE, Liu F, et al. RO­Cker Mo­dels for Re­lia­ble De­tec­tion and Typ­ing of Short-Read Se­quen­ces Car­ry­ing β-Lacta­ma­se Ge­nes. mSys­tems. 2022;7:e01281-21

22. *Orellana LH, Fran­cis TB, Fer­ra­ro M, Hehe­mann J-H, Fuchs BM, *Amann RI. Verrucomicrobiota are spe­cia­list con­su­mers of sul­fa­ted me­thyl pen­to­ses du­ring dia­tom blooms. ISME J. 2022;630–41

Highly cited paper. In early 2024, the ISME journal highlighted this paper as one of the most cited recent papers on its website.

21. Vi­ver T, Con­rad RE, Orellana LH, Ur­di­ain M, Gon­zá­lez-Pas­tor JE, Hatt JK, et al. Dis­tinct eco­ty­pes wi­t­hin a na­tu­ral ha­lo­ar­chae­al po­pu­la­ti­on enable ad­ap­ta­ti­on to chan­ging en­vi­ron­men­tal con­di­ti­ons wi­thout cau­sing po­pu­la­ti­on sweeps. ISME J. 2021;15:1178–91

20. Sutt­ner B, Kim M, Johns­ton ER, Orellana LH, Ruiz-Pe­rez CA, Ro­d­ri­guez-R LM, et al. Tran­scrip­to­mic and rRNA:rDNA Si­gna­tu­res of En­vi­ron­men­tal ver­sus En­te­ric Enterococcus faecalis Iso­la­tes un­der Oli­go­tro­phic Freshwa­ter Con­di­ti­ons. Mi­cro­bi­ol Spectr. 2021;9:e00817-21

19. Ramí­rez-Fernán­dez L, Orellana LH, Johns­ton ER, Kon­stan­ti­ni­dis KT, Or­lan­do J. Di­ver­si­ty of mi­cro­bi­al com­mu­nities and ge­nes in­vol­ved in ni­trous oxi­de emis­si­ons in Ant­arc­tic soils im­pac­ted by ma­ri­ne ani­mals as re­vea­led by me­ta­ge­no­mics and 100 me­ta­ge­no­me-as­sem­bled ge­no­mes. Sci To­tal En­vi­ron. 2021;788:147693

18. Priest T, *Orellana LH, Hu­et­tel B, Fuchs BM, Amann R. Mi­cro­bi­al me­ta­ge­no­me-as­sem­bled ge­no­mes of the Fram Strait from short and long read se­quen­cing plat­forms. PeerJ. 2021;9:e11721

17. Kar­thi­key­an S, Orellana LH, Johns­ton ER, Hatt JK, Löff­ler FE, Aya­la-del-Río HL, et al. Me­ta­ge­no­mic Cha­rac­te­riza­t­i­on of Soil Mi­cro­bi­al Com­mu­nities in the Lu­quil­lo Ex­pe­ri­men­tal Fo­rest (Pu­er­to Rico) and Im­pli­ca­ti­ons for Ni­tro­gen Cy­cling. Dra­ke HL, edi­tor. Appl En­vi­ron Mi­cro­bi­ol. 2021;87:e00546-21

16. Cha G, Mein­hardt KA, Orellana LH, Hatt JK, Pan­nu MW, Stahl DA, et al. The in­flu­ence of al­fal­fa‐switch­grass in­ter­crop­ping on mi­cro­bi­al com­mu­ni­ty struc­tu­re and func­tion. En­vi­ron. Mi­cro­bi­ol. 2021;23:6828–43

15. Sutt­ner B, Johns­ton ER, Orellana LH, Ro­d­ri­guez-R LM, Hatt JK, Ca­rychao D, et al. Me­ta­ge­no­mics as a Pu­blic Health Risk As­sess­ment Tool in a Stu­dy of Na­tu­ral Creek Se­di­ments In­flu­en­ced by Agri­cul­tu­ral and Li­vestock Ru­n­off: Po­ten­ti­al and Li­mi­ta­ti­ons. Appl En­vi­ron Mi­cro­bi­ol. 2020;86:e02525-19

14. Grieb A, Fran­cis TB, Krü­ger K, Orellana LH, Amann R, Fuchs BM. Candidatus Ab­di­ti­bac­ter, a no­vel ge­nus wi­t­hin the Cryomorphaceae, thri­ving in the North Sea. Syst. Appl. Mi­cro­bi­ol. 2020;43:126088

13. Vi­ver T, Orellana LH, Díaz S, Ur­di­ain M, Ra­mos‐Bar­be­ro MD, Gon­zá­lez‐Pas­tor JE, et al. Pre­do­mi­nan­ce of de­ter­mi­nis­tic mi­cro­bi­al com­mu­ni­ty dy­na­mics in sal­terns ex­po­sed to dif­fe­rent light in­ten­si­ties. En­vi­ron. Mi­cro­bi­ol. 2019;21:4300–15

12. Orellana LH, Hatt JK, Iyer R, Chou­rey K, Het­tich RL, Spain JC, et al. Com­pa­ring DNA, RNA and pro­te­in le­vels for mea­su­ring mi­cro­bi­al dy­na­mics in soil mi­cro­cosms amen­ded with ni­tro­gen fer­ti­li­zer. Sci Rep. 2019;9:17630

11. Orellana LH, Fran­cis TB, Krü­ger K, Tee­ling H, Mül­ler M-C, Fuchs BM, et al. Ni­che dif­fe­ren­tia­ti­on among an­nu­al­ly re­cur­rent co­as­tal Ma­ri­ne Group II Euryarchaeota. ISME J. 2019;13:3024–36

10. Vi­ver T, Orellana LH, Gon­zá­lez-Tor­res P, Díaz S, Ur­di­ain M, Farías ME, et al. Ge­no­mic com­pa­ri­son bet­ween mem­bers of the Salinibacteraceae fa­mi­ly, and de­scrip­ti­on of a new spe­cies of Salinibacter (Salinibacter altiplanensis sp. nov.) iso­la­ted from high alti­tu­de hy­per­sa­li­ne en­vi­ron­ments of the Ar­gen­ti­ni­an Al­ti­pla­no. Syst. Appl. Mi­cro­bi­ol. 2018;41:198–212

9. Orellana LH, Chee-San­ford JC, San­ford RA, Löff­ler FE, Kon­stan­ti­ni­dis KT. Year-Round Shot­gun Me­ta­ge­no­mes Re­veal Sta­ble Mi­cro­bi­al Com­mu­nities in Agri­cul­tu­ral Soils and No­vel Am­mo­nia Oxi­di­zers Re­spon­ding to Fer­ti­liza­t­i­on. Appl En­vi­ron Mi­cro­bi­ol. 2018;84:e01646-17

8. Car­de­nas E, Orellana LH, Kon­stan­ti­ni­dis KT, Mohn WW. Ef­fects of tim­ber har­ves­ting on the ge­ne­tic po­ten­ti­al for car­bon and ni­tro­gen cy­cling in five North Ame­ri­can fo­rest eco­zo­nes. Sci Rep. 2018;8:3142

7. Vi­ver T, Orellana LH, Hatt JK, Ur­di­ain M, Díaz S, Rich­ter M, et al. The low di­ver­se gastric mi­cro­bio­me of the jel­ly­fish Cotylorhiza tuberculata is do­mi­na­ted by four no­vel taxa. En­vi­ron. Mi­cro­bi­ol. 2017;19:3039–58

6. Orellana LH, Ro­d­ri­guez-R LM, Kon­stan­ti­ni­dis KT. RO­Cker: ac­cu­ra­te de­tec­tion and quan­ti­fi­ca­ti­on of tar­get ge­nes in short-read me­ta­ge­no­mic data sets by mo­de­ling sli­ding-win­dow bit­scores. Nu­cleic Acids Res. 2016;gkw900

5. Mar­tí­nez-Bus­se­ni­us C, Na­var­ro CA, Orellana LH, Pa­ra­de­la A, Je­rez CA. Glo­bal re­s­pon­se of Acidithiobacillus ferrooxidans ATCC 53993 to high con­cen­tra­ti­ons of cop­per: A quan­ti­ta­ti­ve pro­teo­mics ap­proach. J. Pro­teom. 2016;145:37–45

4. Higg­ins SA, Welsh A, Orellana LH, Kon­stan­ti­ni­dis KT, Chee-San­ford JC, San­ford RA, et al. De­tec­tion and Di­ver­si­ty of Fun­gal Nitric Oxi­de Re­duc­ta­se Ge­nes (p450nor) in Agri­cul­tu­ral Soils. Appl En­vi­ron Mi­cro­bi­ol. 2016;82:2919–28

3. Orellana LH, Ro­d­ri­guez-R LM, Higg­ins S, Chee-San­ford JC, San­ford RA, Rital­ah­ti KM, et al. De­tec­ting Ni­trous Oxi­de Re­duc­ta­se (nosZ) Ge­nes in Soil Me­ta­ge­no­mes: Me­thod De­ve­lop­ment and Im­pli­ca­ti­ons for the Ni­tro­gen Cy­cle. mBio. 2014;5:e01193-14

2. Orellana LH, Je­rez CA. A ge­no­mic is­land pro­vi­des Acidithiobacillus ferrooxidans ATCC 53993 ad­di­tio­nal cop­per re­sis­tan­ce: a pos­si­ble com­pe­ti­ti­ve ad­van­ta­ge. Appl Mi­cro­bi­ol Bio­tech­nol. 2011;92:761–7

1. Na­var­ro CA, Orellana LH, Mau­ria­ca C, Je­rez CA. Tran­scrip­tio­nal and Func­tio­nal Stu­dies of Acidithiobacillus ferrooxidans Ge­nes Re­la­ted to Sur­vi­val in the Pre­sence of Cop­per. Appl En­vi­ron Mi­cro­bi­ol. 2009;75:6102–9

 

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