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Pu­bli­ka­tio­nen 2009

Pu­bli­ka­tio­nen 2009

De­part­ment of Bio­geo­che­mis­try

Al-Raei, A.M., Bosselmann K., Böttcher M.E., Hespenheide B. and Tauber F.: Sea­so­nal dy­na­mics of mi­cro­bi­al sul­fa­te re­duc­tion in tem­pe­ra­te in­terti­dal sur­face se­di­ments: con­trols by tem­pe­ra­tu­re and or­ga­nic mat­ter. Oce­an Dy­na­mics 59:351-370 (2009).  Springer  Full Text
Arning, E.T., Birgel D., Brunner B. and Peckmann J.: Bac­te­ri­al for­ma­ti­on of phos­pha­tic la­mi­ni­tes off Peru. Geo­bio­lo­gy 7:295-307 (2009).  PubMed
Bagwell, C.E., Formolo M., Ye Q., Yeager C.M., Lyons T.W. and Zhang C.L.: Di­rect ana­ly­sis of sul­fa­te re­du­cing bac­te­ri­al com­mu­nities in gas hy­dra­te-im­pac­ted ma­ri­ne se­di­ments by PCR-DGGE.  Jour­nal of Ba­sic Mi­cro­bio­lo­gy 49: S87–S92 (2009).  PubMed
Brüchert, V., Goldhammer, T., Ferdelman, T., Zabel, M.: Sul­fi­de-oxi­di­zing bac­te­ria me­dia­te aut­hi­ge­nic apa­ti­te for­ma­ti­on in phos­pho­ri­te-con­tai­ning se­di­ments of the Na­mi­bi­an up­wel­ling sys­tem - Evi­dence from P-33-la­be­ling ex­pe­ri­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A165 (2009). Full Text
Brunner, B., Goldhammer, T., Templer, S. P., Bernasconi, S. M.: Dis­si­mi­la­to­ry sul­fa­te re­duc­tion: Why is the oxy­gen iso­to­pe equi­li­bri­um va­lue whe­re it is? Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A166 (2009).  ResearchGate
Cohen, P. A., Bradley, A., Knoll, A. H., Grotzinger, J. P., Jensen, S., Abelson, J., Hand, K., Love, G., Metz, J., Mcoughlin, N., Meister, P., Shepard, R., Tice, M., Wilson, J. P.: Tu­bu­lar Com­pres­si­on Fos­sils from the Edia­ca­ran Nama Group, Na­mi­bia. Jour­nal of Pa­leon­to­lo­gy 83(1):110-122 (2009).  BioOne
D′Hondt, S.,  Spivack A., Pockalny R., Ferdelman T.G., Fischer J.P., Kallmeyer J., Abrams L.J., Smith D.C., Graham D., Hasiuk F., Schrum H., Stancin A.M.: Sub­seaf­loor se­di­men­ta­ry life in the South Pa­ci­fic Gyre. PNAS 106(28):11651-11656 (doi:10.1073/​pnas.0811793106) (2009).  PubMed  Full Text
Dale, A. W., P. Regnier, P. van Cappellen, H. Fossing, J. B. Jensen and B. B. Jørgensen: Re­mo­te quan­ti­fi­ca­ti­on of me­tha­ne flu­xes in gas­sy ma­ri­ne se­di­ments through seis­mic sur­vey. Geo­lo­gy 37(3):235-238 (2009).  Geology
Emeis, K.-C., Struck, U., Leipe, T., Ferdelman, T. G.: Va­ria­bi­li­ty in up­wel­ling in­ten­si­ty and nut­ri­ent re­gime in the co­as­tal up­wel­ling sys­tem off­shore Na­mi­bia: re­sults from se­di­ment ar­chi­ves. Int. J. Earth Sci. (Geol. Rundsch.) 98:309–326 (2009).  Springer  Full Text
Fischer, J.P., Ferdelman T.G., D′Hondt S., Røy H., Wenzhöfer F.: Oxy­gen pe­ne­tra­ti­on deep into the se­di­ment of the South Pa­ci­fic gyre. Bio­geo­sci­en­ces 6:1467-1478 (2009).  EBSCO
Formolo, M. J., Petsch, S. T., Martini, A. M., Ferdelman, T. G.: Si­gna­tu­res of an­ae­ro­bic hy­dro­c­ar­bon bio­de­gra­da­ti­on in sul­fi­dic and me­tha­nic en­vi­ron­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A390 (2009). Full Text
Goldhammer, T., Brunner, B., Ferdelman, T., Zabel, M.: Phos­pha­te oxy­gen iso­topes and mi­cro­bi­al ac­tivi­ty in the ma­ri­ne sub­sur­face. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A448 (2009).  ResearchGate
Hepp, D.A., Mörz, T., Hensen, C., Frederichs, T., Kasten, S., Riedinger, N., Hay, W.W.: A late Mio­ce­ne-ear­ly Plio­ce­ne Ant­arc­tic de­ep­wa­ter re­cord of re­pea­ted iron re­duc­tion events. Ma­ri­ne Geo­lo­gy 266(1-4):198-211 (2009).  ScienceDirect
Hetzel, A., Böttcher M.E., Wortmann U.G. and Brumsack H.-J.: Pa­leo-re­dox con­di­ti­ons du­ring OAE 2 re­flec­ted in De­mera­ra Rise se­di­ment geo­che­mis­try (ODP Leg 207). Pa­laeo­geo­gra­phy, Pa­laeo­cli­ma­to­lo­gy, Pa­laeo­e­co­lo­gy 273:302-328 (2009).  ScienceDirect
Høgslund, S., N. P. Revsbech, J. G. Kuenen, B. B. Jørgensen, V. A. Gallardo, J. van de Vossenberg, J. L. Nielsen, L. Holmkvist, E. T. Arning and L. P. Nielsen: Phy­sio­lo­gy and be­ha­viour of ma­ri­ne Thioploca. The ISME Jour­nal 3:647-657 (2009).  PubMed  Full Text
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M.M.M. Kuypers and F. Widdel: Sub­stan­ti­al 13C/12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vitro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(5):370-376 (2009).  PubMed
Hubert, C., A. Loy, M. Nickel, C. Arnosti, C. Baranyi, V. Brüchert, T. Ferdelman, K. Finster, F. M. Christensen, J. Rosa de Rezende, V. Vandieken and B. B. Jørgensen: A con­stant flux of di­ver­se ther­mo­phi­lic bac­te­ria into the cold arc­tic se­abed. Sci­ence:325: 1541-1544 (2009).  PubMed
Kamyshny, Jr. A.: Im­pro­ved Cya­n­o­ly­sis Pro­to­col for De­tec­tion of Zero-va­lent Sul­fur in Na­tu­ral Aqua­tic Sys­tems. Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 7:442-448 (2009).  ASLO  Full Text
Kamyshny, Jr. A.: Solubi­li­ty of Cy­clooc­ta­sul­fur in Pure Wa­ter and Sea Wa­ter at Dif­fe­rent Tem­pe­ra­tu­res. Geochi­mi­ca et Cos­mochi­mi­ca Acta 73:6022-6028 (2009).  ScienceDirect
Kamyshny, Jr. A., Borkenstein C.G., Ferdelman T.G.: Pro­to­col for quan­ti­ta­ti­ve de­tec­tion of ele­men­tal sul­fur and po­lys­ul­fi­de zero-va­lent sul­fur dis­tri­bu­ti­on in na­tu­ral aqua­tic sam­ples. Geo­stan­dards Geo­ana­ly­ti­cal Res. (Ear­ly Ed.) 33 (3):415-435 (2009).  Wiley
Kamyshny, A., Yakushev, E., Jost, G.: Zero-va­lent sul­fur-thio­sul­fa­te re­dox ano­ma­ly at the che­mo­cli­nes of stra­ti­fied bas­ins. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A619 (2009).  ResearchGate
Lam, P., G. Lavik, M.M. Jensen, J. van de Vossenberg, M. Schmid, D. Woebken, D. Guitérrez, R. Amann, M.S.M. Jetten, and M.M.M. Kuypers: Re­vi­sing the ni­tro­gen cy­cle in the Pe­ru­vi­an oxy­gen mi­ni­mum zone. PNAS 106(12):4752-4757 (2009).  PubMed  Full Text
Lavik, G., T. Stührmann, V. Brüchert, A. Van der Plas, V. Mohrholz, P. Lam,  M. Mußmann, B.M. Fuchs, R. Amann, U. Lass, and M.M.M. Kuypers: De­to­xi­fi­ca­ti­on of sulph­idic Af­ri­can shelf wa­ters by bloo­m­ing che­mo­lit­ho­tro­phs. Na­tu­re 457:581-585 (2009).  PubMed
Leloup, J., H. Fossing, K. Kohls, L. Holmkvist, C. Borowski and B. B. Jørgensen: Sul­fa­te-re­du­cing bac­te­ria in ma­ri­ne se­di­ment (Aar­hus Bay, Den­mark): ab­un­dance and di­ver­si­ty re­la­ted to geo­che­mi­cal zo­na­ti­on. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(5):1278-1291 (2009).  PubMed
Lomstein, B. A., J. Niggemann, B. B. Jørgensen and A. T. Langerhuus: Ac­cu­mu­la­ti­on of pro­ka­ryo­tic re­mains du­ring or­ga­nic mat­ter dia­ge­ne­sis in sur­face se­di­ments off Peru. Lim­no­lo­gy and Ocea­no­gra­phy 54(4):1139-1151 (2009).  Readcube
Meister, P., Bernasconi, S.M., Aiello, I.W., Vasconcelos, C. and McKenzie, J.A.: Depth and con­trols of Ca-rho­doch­ro­si­te pre­ci­pi­ta­ti­on in bio­tur­ba­ted se­di­ments of the Eas­tern Equa­to­ri­al Pa­ci­fic, ODP Leg 201, Site 1226 and DSDP Leg 68, Site 503. Se­di­men­to­lo­gy 56:1552-1568 (2009).  Wiley
Meister, P., Freund, S., Wehrmann, L. M., Brunner, B., Ferdelman, T. G.: De­gree of py­ri­tiza­t­i­on and σ34-va­lues re­cord sub­oxic con­di­ti­ons in Eas­tern Equa­to­ri­al Pa­ci­fic se­di­ments (ODP Site 1226). Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73(13,Sup­pl. S): A868 (2009).  Full Text
Oldenburg, T. B. P., Larter, S. R., Adams, J. J., Clements, M., Hubert, C., Rowan, A. K., Brown, A., Head, I. M., Grigoriyan, A. A., Voordouw, G., Fustic, M.: Me­thods for Re­co­very of Mi­cro­or­ga­nisms and In­tact Mi­cro­bi­al Po­lar Li­pids from Oil-Wa­ter Mix­tu­res: La­bo­ra­to­ry Ex­pe­ri­ments and Na­tu­ral Well-Head Fluids. Ana­ly­ti­cal Che­mis­try 81(10):4130-4136 (2009).  PubMed
Rabus, R., Wilkes, H., Widdel, F.: Pro­teo­ge­no­mic in­sights into an­ae­ro­bic bio­de­gra­da­ti­on of hy­dro­c­ar­bons. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1065 (2009). Full Text
Rincon-Martinez, D., Contreras, S., Lamy, F., Tiedemann, R.: Are gla­ci­als (in­ter­gla­ci­al) in the eas­tern­most Pa­ci­fic Oce­an dri­er (wet­ter) du­ring the last 300 000 ye­ars? Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73(13,Sup­pl. S): A1102 (2009). Full Text
Robador, A., Brüchert, V., and Jørgensen, B.B.: The im­pact of tem­pe­ra­tu­re chan­ge on the ac­tivi­ty and com­mu­ni­ty com­po­si­ti­on of sulp­ha­te-re­du­cing bac­te­ria in arc­tic ver­sus tem­pe­ra­te ma­ri­ne se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(7):1692-1703 (2009).  PubMed
Røy, H., K. Vopel, M. Huettel and B. B. Jørgensen: Sul­fi­de as­si­mi­la­ti­on by ec­to­sym­bi­onts of the ses­si­le ci­lia­te, Zoothamnium niveum. Ma­ri­ne Bio­lo­gy 156:669-677 (2009).  Springer  Full Text
Sawicka, J.E., Robador, A., Hubert, C., Jørgensen, B.B., Brüchert V.: Ef­fects of free­ze-thaw cy­cles on an­ae­ro­bic mi­cro­bi­al pro­ces­ses in an Arc­tic in­terti­dal mud flat. The ISME Jour­nal 1-10, doi:10.1038/​is­mej.2009.140 (2009).  PubMed  Full Text
Teske, A., Jørgensen, B. B., Gallardo, V. A.: Fil­amen­tous bac­te­ria in­ha­b­it­ing the she­aths of ma­ri­ne Thioploca spp. on the Chi­le­an con­ti­nen­tal shelf. FEMS Mi­cro­bi­ol Ecol 68:164–172 (2009).  PubMed
Velbel, M.A., Donatelle, A.R., and Formolo, M.J.: Re­ac­tant-pro­duct tex­tu­res, vo­lu­me re­la­ti­ons, and im­pli­ca­ti­ons for ma­jor-ele­ment mo­bi­li­ty du­ring na­tu­ral wea­the­ring of horn­blen­de, Tal­lu­lah Falls For­ma­ti­on, Geor­gia Blue Ridge. U.S.A.  Ame­ri­can Jour­nal of Sci­ence 309:661-688 (2009).  AJS
Wassmann, P., B. B. Jørgensen, M. Reigstad and D. Slagstad: Se­di­men­ta­ti­on and de­gra­da­ti­on of bio­ge­nic mat­ter. pp. 323-338. In: Eco­sys­tem Ba­rents Sea. E. Sak­s­haug, G. John­sen and K. Ko­vacs (eds.), Ta­pir Aca­de­mic Press, Trond­heim (2009).
Webster, G., Blazejak A., Cragg B.A., Schippers A., Sass H., Rinna J., Tang X., Mathes F, Ferdelman T.G., Fry J.C., Weightman A.J., and Parkes R.J.: Sub­sur­face mi­cro­bio­lo­gy and bio­geo­che­mis­try of a deep, cold-wa­ter car­bo­na­te mound from the Por­cu­p­i­ne Se­abight (IODP Ex­pe­di­ti­on 307). Env. Mi­cro­bi­ol. 11(1):239-257 (2009).  PubMed  Full Text
Wehrmann, L.M., Knab, N.J., Pirlet, H., Unnithan, V., Wild, C. and Ferdelman, T.G.: Car­bon mi­ne­ra­liza­t­i­on and car­bo­na­te pre­ser­va­ti­on in mo­dern cold-wa­ter co­ral reef se­di­ments on the Nor­we­gi­an shelf. Bio­geo­sci­en­ces 6:663-680 (2009).  Biogeosciences  Full Text
Wehrmann, L. M., Templer, S. P., Maignien, L., Bernasconi, S. M., Brunner, B., Ferdelman, T. G.: The im­print of me­tha­ne see­page on geo­che­mi­cal pro­ces­ses in cold-wa­ter co­ral mounds on Pen Duick Es­carpment, Gulf of Ca­diz. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1424 (2009).  ScienceDirect
Wild, C., Wehrmann, L.M., Mayr, C., Schöttner, S.I., Allers, E. and Lundälv T.: Mi­cro­bi­al de­gra­da­ti­on of cold-wa­ter co­ral-de­ri­ved or­ga­nic mat­ter: po­ten­ti­al im­pli­ca­ti­on for or­ga­nic C cy­cling in the wa­ter co­lumn above Tis­ler Reef. Aqua­tic Bio­lo­gy 7:71-80 (2009). Full Text
Ph.D. theses
Holmkvist, Lars: A cryp­tic sul­fur cy­cle dri­ven by iron be­low the sul­fa­te-me­tha­ne tran­si­ti­on zone. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 271pp.
Holtappels, Moritz: Ex­ch­an­ge of nut­ri­ents and oxy­gen bet­ween se­di­ments and wa­ter co­lumn: the role of the bent­hic boun­da­ry lay­er. Uni­ver­si­tät Bre­men, Bre­men (2009), 164pp.
Robador, Alberto: Tem­pe­ra­tu­re con­trol of bac­te­ri­al car­bon mi­ne­ra­liza­t­i­on pro­ces­ses in ma­ri­ne se­di­ments. Dis­ser­ta­ti­on, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009), 119pp.

Eco­phy­sio­lo­gy Group

Diploma thesis
Hohmann, Tine: Ein­fluss von Licht auf das Mi­gra­ti­ons­ver­hal­ten ei­nes ma­ri­nen Beggiatoa Stam­mes. Di­plom­ar­beit Uni­ver­si­tät Bre­men, Bre­men (2009), 89pp.

Mi­cro­bi­al Ge­no­mics Group

Field, D., P. Sterk, N. Kyrpides, R. Kottmann, F. O. Glöckner, L. Hirschman, G.M. Garrity, J. Wooley, and P. Gilna: Mee­ting re­port from the Ge­no­mic Stan­dards Con­sor­ti­um (GSC) work­shops 6 and 7. SIGS 1(1):68-71 (doi:10.4056/​sigs.25165) (2009).  PubMed  Full Text
Jogler, C., M. Kube, S. Schübbe, S. Ullrich, H. Teeling, D. A. Bazylinski, R. Reinhardt, and D. Schüler: Com­pa­ra­ti­ve ana­ly­sis of ma­gne­to­so­me gene clus­ters in ma­gne­tot­ac­tic bac­te­ria pro­vi­des fur­ther evi­dence for ho­ri­zon­tal gene trans­fer. En­vi­ron. Mi­cro­bi­ol. 11(5):1267-1277 (2009).  PubMed
Strittmatter, A. W., H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R. Martinez-Arias, D. Bartels,  A. Goesmann, L. Krause, A. Pühler, H.-P. Klenk, M. Richter, M. Schüler, F. O. Glöckner,  A. Meyerdierks, G. Gottschalk and R. Amann: Ge­no­me se­quence of Desulfobacterium autotrophicum HRM2, a ma­ri­ne sul­fa­te re­du­cer oxi­di­zing or­ga­nic car­bon com­ple­te­ly to car­bon di­oxi­de. En­vi­ron. Mi­cro­bi­ol. 11(5):1038-1055 (2009).  PubMed  Full Text
Wecker, P., C. Klockow, A. Ellrott, C. Quast, P. Langhammer, J. Harder, and F. O. Glöckner: Tran­scrip­tio­nal re­s­pon­se of the mo­del planc­to­my­ce­te Rhodopirellula baltica SH1T to chan­ging en­vi­ron­men­tal con­di­ti­ons. BMC Ge­no­mics 10:410 (doi:10.1186/​1471-2164-10-410) (2009).  PubMed  Full Text
Wooley, J.C., D. Field, and F. O. Glöckner: Ex­ten­ding Stan­dards for Ge­no­mics and Me­ta­ge­no­mics Data: A Re­se­arch Co­or­di­na­ti­on Net­work for the Ge­no­mic Stan­dards Con­sor­ti­um (RCN4G­SC). SIGS 1(1):85-90 (doi:10.4056/​sigs.26218) (2009).  PubMed  Full Text
M.Sc theses
Yilmaz, Pelin: Ap­p­li­ca­ti­on of sta­tis­ti­cal me­thods for the ana­ly­sis of geo-re­fe­ren­ced se­quence data in their en­vi­ron­men­tal con­text. Mar­Mic, Mas­ter the­sis, Uni­ver­si­tät Bre­men, Bre­men (2009), 76pp.
Buttigieg, Pier Luigi: In­ves­ti­ga­ting ha­bi­tat-spe­ci­fic si­gna­tu­res of the ma­ri­ne bac­te­rio­plank­ton: in­sights from com­pa­ra­ti­ve ge­no­mics. Mar­Mic, Mas­ter The­sis/ PhD Pro­po­sal, Uni­ver­si­ty of Bre­men, Bre­men (2009), 74pp.
Ph.D. theses
Kottmann, Renzo: Data in­te­gra­ti­on for ma­ri­ne eco­lo­gi­cal ge­no­mics. PhD the­sis, Mar­Mic, Ja­cobs Uni­ver­si­ty Bre­men, Bre­men (2009), 156pp.
Wecker, Patricia: Eco­lo­gi­cal as­pects of the ma­ri­ne planc­to­my­ce­te Rho­do­pi­rel­lu­la bal­ti­ca SH1T : a who­le ge­no­me ar­ray ap­proach. Dis­ser­ta­ti­on Ja­cobs Uni­ver­si­ty, Bre­men (2009), 222pp.
Zhurina, Daria: Iden­ti­fi­ca­ti­on and par­ti­al cha­rac­te­riza­t­i­on of tran­scrip­tio­nal re­gu­la­tors in­vol­ved in tem­pe­ra­tu­re-de­pen­dent ex­pres­si­on of le­van­su­cra­se in Pseudomonas syringae. PhD the­sis, Mar­Mic, Ja­cobs Uni­ver­si­ty, Bre­men (2009), 94pp.

Mi­cro­bi­al Ha­bi­tat Group

Berg, P., R.N. Glud, A. Hume, H. Stahl, K. Oguri, V. Meyer and H. Kitazato: Eddy cor­re­la­ti­on mea­su­re­ments of oxy­gen uptake in deep oce­an se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy-Me­thods 7:576-584 (2009).  ASLO  Full Text
Böer, S.I., C. Arnosti, J.E.E. van Beusekom and A. Boetius: Tem­po­ral va­ria­ti­ons in mi­cro­bi­al ac­tivi­ties and car­bon tur­no­ver in sub­ti­dal san­dy se­di­ments. Bio­geo­sci­en­ces 6:1149-1165 (2009).  Biogeosciences  Full Text
Böer, S.I., S.I.C. Hedtkamp, J.E.E. van Beusekom, J.A. Fuhrman, A. Boetius and A. Ramette: Time- and se­di­ment depth-re­la­ted va­ria­ti­ons in bac­te­ri­al di­ver­si­ty and com­mu­ni­ty struc­tu­re in sub­ti­dal sands. ISME Jour­nal 3:780-791 (2009).  PubMed  Full Text
Boetius, A., C. Bienhold, S. Schöttner, J. Ufkes and A. Ramette: Fin­ger­ab­drü­cke mi­kro­bi­el­ler Ge­mein­schaf­ten im Meer. BIO­spek­trum 7:726-729 (2009).  ResearchGate  Full Text
Boetius, A. and S. Joye: Thri­ving in salt. Sci­ence 324:1523-1525 (2009).
Boetius, A. and F. Wenzhöfer: In situ tech­no­lo­gies for stu­dy­ing deep-sea hot­spot eco­sys­tems. Ocea­no­gra­phy 22:177 (2009).  Oceanography  Full Text
Cambon-Bonavita, M.A. T. Nadalig, E. Roussel, E. Delage, S. Duperron, J.C. Caprais, A. Boetius and M. Sibuet: Di­ver­si­ty and dis­tri­bu­ti­on of me­tha­ne-oxi­di­zing mi­cro­bi­al com­mu­nities as­so­cia­ted with dif­fe­rent fau­nal as­sem­bla­ges in a gi­ant pock­mark of the Ga­bon con­ti­nen­tal mar­gin. Deep-Sea Re­se­arch II 56:2248-2258 (2009).  Archimer  Full Text
D'Hondt, S., A.J. Spivack, R. Pockalny, T.G. Ferdelman, J.P. Fischer, J. Kallmeyer, L.J. Abrams, D.C. Smith, D. Graham, F. Hasiuk, H. Schrum and A.M. Stancin: Sub­seaf­loor se­di­men­ta­ry life in the South Pa­ci­fic Gyre. PNAS 106:11651-11656 (2009).  PubMed  Full Text
Duperron, S., D. de Beer, M. Zbinden, A. Boetius, V. Schipani, N. Kahil and F. Gaill: Mole­cu­lar cha­rac­te­riza­t­i­on of bac­te­ria as­so­cia­ted with the tro­pho­so­me and the tube of  Lamellibrachia sp., a si­bog­li­nid an­ne­l­id from cold seeps in the eas­tern Me­di­ter­ra­ne­an. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 69:395-409 (2009).  PubMed
Durbin, A. M., Biddle, J., Martino, A., House, C., Fischer, J., Spivack, A., Schrum, H., D'Hondt, S., Teske, A.: Mi­cro­bi­al com­mu­ni­ty stra­ti­fi­ca­ti­on in TOC-de­p­le­ted ma­ri­ne sub­sur­face se­di­ments of the Pa­ci­fic Oce­an. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A316 (2009).  ResearchGate
Fischer, J.P., Ferdelman T.G., D′Hondt S., Røy H., Wenzhöfer F.: Oxy­gen pe­ne­tra­ti­on deep into the se­di­ment of the South Pa­ci­fic gyre. Bio­geo­sci­en­ces 6:1467-1478 (2009).  Biogeosciences  Full Text
Foucher, J.P., G.K. Westbrook, A. Boetius, S. Ceramicola, S. Dupré, J. Mascle, J. Mienert, O. Pfannkuche, C. Pierre and D. Praeg: Struc­tu­re and dri­vers of cold seep eco­sys­tems. Ocea­no­gra­phy 22(1):92-109 (2009).  Archimer  Full Text
Glud, R.N., B. Thamdrup, H. Stahl, F. Wenzhöfer, A. Glud, H. Nomaki, K. Oguri, N.P. Revsbech and H. Kitazato: Ni­tro­gen cy­cling in a deep oce­an mar­gin se­di­ment (Sa­ga­mi Bay, Ja­pan). Lim­no­lo­gy and Ocea­no­gra­phy 54(3):723-734 (2009).  ResearchGate  Full Text
Glud, R.N., H. Stahl, P. Berg, F. Wenzhöfer, K. Oguri and H. Kitazato: In situ mi­cro­s­ca­le va­ria­ti­on in dis­tri­bu­ti­on and con­sump­ti­on of O2: A case stu­dy from a deep oce­an mar­gin se­di­ment (Sa­ga­mi Bay, Ja­pan). Lim­no­lo­gy and Ocea­no­gra­phy 54:1-12 (2009).  ASLO  Full Text
Haeckel, M., Bigalke, N., Boetius, A., De Beer, D., Rehder, G., Savy, J. P.:Se­ques­te­ring CO2 in ma­ri­ne se­di­ments - Geo­che­mi­cal in­sights from a na­tu­ral case stu­dy. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A484 (2009).  ResearchGate
Hoffmann, F., R. Radax, D. Woebken, M. Holtappels, G. Lavik, H.T. Rapp, M.-L. Schläppy, C. Schleper and M.M.M. Kuypers: Com­plex ni­tro­gen cy­cling in the spon­ge Geodia barretti. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(9):2228-2243 (2009).  PubMed
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M.M.M. Kuypers and F. Widdel: Sub­stan­ti­al 13C/12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vi­tro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(5):370-376 (2009).  PubMed
Huguen, C., J.P. Foucher, J. Mascle, H. Ondréas, M. Thouement, S. Gontharet, A. Stadnitskaia, C. Pierre, G. Bayon, L. Loncke, A. Boetius, I. Bouloubassi, G. de Lange, J.C. Caprais, Y. Fouquet, J. Woodside, S. Dupré and the NAUTINIL Scientific Party: Me­nes cal­de­ra, a high­ly ac­tive site of bri­ne see­page in the Eas­tern Me­di­ter­ra­ne­an sea: "In situ" ob­ser­va­tions from the NAU­TI­NIL ex­pe­di­ti­on (2003). Ma­ri­ne Geo­lo­gy 261:138-152 (2009).  Archimer  Full Text
Jansen, S., E. Walpersdorf, U. Werner, M. Billerbeck, M.E. Böttcher and D. de Beer: Func­tio­n­ing of in­terti­dal flats in­fer­red from tem­po­ral and spa­ti­al dy­na­mics of O2, H2S and pH in their sur­face se­di­ment. Oce­an Dy­na­mics 59:317-332 (2009).  Springer  Full Text
Kanzog, C. and A. Ramette: Mi­cro­bi­al co­lo­ni­sa­ti­on of ar­ti­fi­ci­al and deep-sea se­di­ments in the Arc­tic Oce­an. Ma­ri­ne Eco­lo­gy 30:391-404 (2009).  Wiley
Kanzog, C., Ramette, A., Quéric, N. V., Klages, M.: Re­s­pon­se of bent­hic mi­cro­bi­al com­mu­nities to chi­tin en­rich­ment: an in situ stu­dy in the deep Arc­tic Oce­an. Po­lar Biol 32:105–112 (2009).  Springer  Full Text
Knittel, K. and A. Boetius: An­ae­ro­bic oxi­da­ti­on of me­tha­ne: pro­gress with an un­k­nown pro­cess. An­nu­al Re­view of Mi­cro­bio­lo­gy 63:311-334 (2009).  PubMed
López-López, A., P. Yarza, M. Richter, A. Suárez-Suárez, H. Niemann, J. Antón and R. Rosselló-Móra: Ex­tre­me­ly ha­lo­phi­lic mi­cro­bi­al com­mu­nities in an­ae­ro­bic se­di­ments from a so­lar sal­tern. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports (doi 10.1111/​j.1758-2229.00108.x) (2009).  PubMed
Niemann, H., D. Fischer, D. Graffe, K. Knittel, A. Montiel, O. Heilmayer, K. Nöthen, T. Pape, S. Kasten, G. Bohrmann, A. Boetius and J. Gutt: Bio­geo­che­mis­try of a low-ac­tivi­ty cold seep in the Lar­sen B area, wes­tern Wed­dell Sea, Ant­arc­tica. Bio­geo­sci­en­ces 6:2383-2395 (2009).  PubMed  Full Text
Omoregie, E.O., H. Niemann, V. Mastalerz, G.J. de Lange, A. Stadnitskaia, J. Mascle, J.-P. Foucher and A. Boetius: Mi­cro­bi­al me­tha­ne oxi­da­ti­on and sul­fa­te re­duc­tion at cold seeps of the deep Eas­tern Me­di­ter­ra­ne­an Sea. Ma­ri­ne Geo­lo­gy 261:114-127 (2009).  ScienceDirect
Ramette, A.: Quan­ti­ta­ti­ve com­mu­ni­ty fin­ger­prin­ting me­thods for esti­ma­ting the ab­un­dance of ope­ra­tio­nal ta­xo­no­mic units in na­tu­ral mi­cro­bi­al com­mu­nities. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 75:2495-2505 (2009).  PubMed  Full Text
Ramette, A., J.M. Tiedje and A. Boetius: Im­pact of space, time and com­plex en­vi­ron­ments on mi­cro­bi­al com­mu­nities. Cli­ni­cal Mi­cro­bio­lo­gy and In­fec­tion 15 (Sup­pl. 1):60-62 (2009).  PubMed  Full Text
Ramette, A. and A. Boetius: How to use a crys­tal ball in en­vi­ron­men­tal mi­cro­bio­lo­gy: de­ve­lo­ping new ways to ex­plo­re com­plex da­ta­sets. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(1):3-26 (2009). Full Text
Rehder, G., Nakamura, K., Deimling, J. S. V., Boetius, A., De Beer, D., Inagaki, F., Haeckel, M., Thomas, S.: Na­tu­ral oc­cur­ren­ces of li­quid CO2 emis­si­ons in the Oki­na­wa Trough: Geo­lo­gi­cal set­ting and va­ria­ti­ons of gas com­po­si­ti­on. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1082 (2009). Full Text
Røy, H., K. Vopel, M. Huettel and B. B. Jørgensen: Sul­fi­de as­si­mi­la­ti­on by ec­to­sym­bi­onts of the ses­si­le ci­lia­te, Zoothamnium niveum. Ma­ri­ne Bio­lo­gy 156:669-677 (2009).  Springer  Full Text
Schöttner, S., F. Hoffmann, C. Wild, H.T. Rapp, A. Boetius and A. Ramette:  In­ter- and in­tra- ha­bi­tat bac­te­ri­al di­ver­si­ty as­so­cia­ted with cold-wa­ter co­rals. The ISME Jour­nal 3:756-759 (2009).  PubMed  Full Text
Schubotz, F., Ventura, G. T., Nelson, R. K., Wegener, G., Knittel, K., Wilhelm, T., Zabel, M., Kasten, S., Boetius, A., Reddy, C. M., Hinrichs, K. U.: Struc­tu­re and func­tion of a cold seep nur­tu­red by see­page of hea­vy oil. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1186 (2009).  ResearchGate
Treude, T., C.R. Smith, F. Wenzhöfer, E. Carney, A.F. Bernardino, A.K. Hannides, M. Krüger and A. Boetius: Bio­geo­che­mis­try of a deep-sea wha­le fall: sul­fa­te re­duc­tion, sul­fi­de ef­f­lux and me­tha­no­ge­ne­sis. Ma­ri­ne Eco­lo­gy Pro­gress Se­ries 382:1-21 (2009).  MEPS  Full Text
Treude, T., Smith, C. R., Wenzhöfer, F., Carney, E., Bernardino, A. F., Hannides, A. K., Krüger, M., Boetius, A.: From wha­le to che­mo­syn­the­sis: En­er­gy and car­bon flu­xes at a deep-sea wha­le fall. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1346 (2009).  ResearchGate  Full Text
Ufkes, J., Ramette, A., Haeckel, M., de Beer, D., Inagaki, F., Boetius, A.: Im­pact of high CO2 con­cen­tra­ti­ons on the struc­tu­re of mi­cro­bi­al com­mu­nities in ma­ri­ne se­di­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1359 (2009).  ResearchGate
Vanreusel, A., A.C. Andersen, A. Boetius, D. Connelly, M.R. Cunha, C. Decker, A. Hilario, K.A. Kormas, L. Maignien, K. Olu, M. Pachiadaki, B. Ritt, C. Rodrigues, J. Sarrazin, P. Tyler, S. van Gaever and H. Vanneste: Bio­di­ver­si­ty of cold seep eco­sys­tems along the Eu­ro­pean mar­gins. Ocea­no­gra­phy 22(1):110-127 (2009).  Archimer  Full Text
Weaver, P.P.E., A. Boetius, R. Danovaro, A. Freiwald, V. Gunn, S. Heussner, T. Morato, I. Schewe and S. van den Hove: The fu­ture of in­te­gra­ted deep-sea re­se­arch in Eu­ro­pe The HER­MIO­NE Pro­ject. Ocea­no­gra­phy 22(1):178-191 (2009).  Oceanography  Full Text
Wegener, G. and A. Boetius: An ex­pe­ri­men­tal stu­dy on short-term chan­ges in the an­ae­ro­bic oxi­da­ti­on of me­tha­ne in re­s­pon­se to va­ry­ing me­tha­ne and sul­fa­te flu­xes. Bio­geo­sci­en­ces 6:867–876 (2009).  Biogeosciences  Full Text
Wegener, G., Holler, T., Kellermann, M., Musat, N., Kuypers, M. M. M., Boetius, A.: New in­sights into AOM by sta­ble iso­to­pe pro­bing com­bi­ned with HISH-na­no­SIMS and mem­bra­ne-de­ri­ved li­pid ana­ly­sis. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1424 (2009).  ResearchGate
Wehrmann, L.M., Knab, N.J., Pirlet, H., Unnithan, V., Wild, C. and Ferdelman, T.G.: Car­bon mi­ne­ra­liza­t­i­on and car­bo­na­te pre­ser­va­ti­on in mo­dern cold-wa­ter co­ral reef se­di­ments on the Nor­we­gi­an shelf. Bio­geo­sci­en­ces 6:663-680 (2009).  Biogeosciences  Full Text
Wild, C., L.M. Wehrmann, C. Mayr, S.I. Schöttner, E. Allers and T. Lundälv: Mi­cro­bi­al de­gra­da­ti­on of cold wa­ter co­ral-de­ri­ved or­ga­nic mat­ter: po­ten­ti­al im­pli­ca­ti­on for or­ga­nic C cy­cling in the wa­ter co­lumn above Tis­ler Reef. Aqua­tic Bio­lo­gy 7:71-80 (2009). Full Text
Zhao, S., A. Ramette, G.L. Niu, H. Liu and N.Y. Zhou: Ef­fects of ni­tro­ben­ze­ne con­ta­mi­na­ti­on and of bio­aug­men­ta­ti­on on ni­tri­fi­ca­ti­on and am­mo­nia-oxi­di­zing bac­te­ria in soil. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 70: 315–323 (2009).  PubMed
M.Sc theses
Jacob, M.: De­ve­lop­ment and va­li­da­ti­on of com­mu­ni­ty fin­ger­prin­ting tools to ana­ly­ze mi­cro­bi­al di­ver­si­ty in ma­ri­ne se­di­ments. Mar­Mic, Mas­ter the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2009), 60pp.
Pop Ristova, P.: Bio­geo­che­mi­cal ac­tivi­ty and as­so­cia­ted bio­di­ver­si­ty at re­du­ced deep sea hot spot eco­sys­tems. Mas­ter the­sis, Mar­Mic, Uni­ver­si­ty of Bre­men, Bre­men (2009), 63pp.
Ph.D. theses
Felden, J.: Me­tha­ne flu­xes and as­so­cia­ted bio­geo­che­mi­cal pro­ces­ses in cold seep eco­sys­tems. PhD the­sis,  Mar­Mic, Ja­cobs Uni­ver­si­ty Bre­men, Bre­men (2009).
Fischer, J.: Oxy­gen dy­na­mics of ma­ri­ne se­di­ments on dif­fe­rent spa­ti­al sca­les. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009),155pp.
Hvitfeldt Iversen, Morten: Car­bon tur­no­ver in sin­king par­ti­cles in the ma­ri­ne en­vi­ron­ment. PhD the­sis, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009), 168pp.

Ma­the­ma­ti­cal Mo­de­ling Group

Javadi, K. and A. Khalili: On ge­ne­ra­ting uni­form bot­tom she­ar stress. Part II: she­ar stress in­du­cing de­vices. Re­cent Pa­tents on Che­mi­cal En­gi­nee­ring 2(3):223-229 (2009).  BenthamScience  Full Text
Koza, Z., M. Matyka  and A. Khalili: Fi­ni­te-size an­iso­tro­py in sta­tis­ti­cal­ly uni­form po­rous me­dia. Phy­si­cal Re­view E79:066306-1 (doi: 10.1103/​Phys­Re­vE.79.066306)(2009).  PubMed  Full Text
Liu, B. and A. Khalili: Lat­ti­ce Boltz­mann mo­del for ex­te­ri­or flows with an an­nea­ling pre­con­di­tio­n­ing me­thod. Phy­si­cal Re­view E. 79:066701 (doi: 10.1103/​Phys­Re­vE.79.066701) (2009).  PubMed
Stöhr, M., J. Schanze  and A. Khalili: Vi­sua­liza­t­i­on of gas-li­quid mass trans­fer and wake struc­tu­re of ri­sing bub­bles using pH-sen­si­ti­ve PLIF. Ex­pe­ri­ments in Fluids 47:135-143 (2009).  Springer  Full Text
Morad, M. R. and A. Khalili: Tran­si­ti­on lay­er thick­ness in a flu­id-po­rous me­di­um of mul­ti-si­zed sphe­ri­cal beads. Ex­pe­ri­ments in Fluids 46(2):323-330 (2009).  Springer  Full Text

De­part­ment of Mi­cro­bio­lo­gy

Carvallo, C., Hickey, S., Faivre, D., Menguy, N.: For­ma­ti­on of ma­gne­ti­te in Magnetospirillum gryphiswaldense stu­di­ed with FORC dia­grams. Earth Pla­nets and Space 61(1):143-150 (2009). Full Text
Fraas, S., A.K. Steinbach, A. Tabbert, J. Harder, U. Ermler, K. Tittmann, A. Meyer and P.M.H. Kroneck: Cy­clo­he­xa­ne-1,2-dio­ne hy­dro­la­se: A new tool to de­gra­de ali­cy­clic com­pounds. J. Mol. Cat. B: En­zy­matic 61:47-49 (2009).  KOPS  Full Text
Heip, C., H. Hummel, P. van Avesaath, W. Appeltans, C. Arvanitidis, R. Aspden, M. Austen, F. Boero, T.J. Bouma, C. Boxshall, F. Buchholz, T. Crowe, A. Delaney, T. Deprez, C. Embow, J.P. Feral, J.M. Gasol, A. Gooday, J. Harder, A. Ianora, A. Kraberg, B. Mackenzie, H. Ojaveer, D. Paterson, H. Rumohr, D. Schiedek, A. Sokolowski, P. Somerfield, I. Sousa Pinto, M. Vincx, J.M. Weslawski, R. Nash: Ma­ri­ne bio­di­ver­si­ty and eco­sys­tem func­tio­n­ing. Róisí­n Nash (ed.), Print­ba­se, Dub­lin, Ire­land. Ma­ri­ne Bio­di­ver­si­ty and Eco­sys­tem Func­tio­n­ing EU Net­work of Ex­cel­lence, Sustainable de­ve­lop­ment, glo­bal chan­ge and eco­sys­tems, GOCE-CT-2003-505446, ISSN 2009-2539 (2009), 100pp. Full Text
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M.M.M. Kuypers and F. Widdel: Sub­stan­ti­al 13C/12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vi­tro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(5):370-376 (2009).  PubMed
Lin, Y. S., Biddle, J. F., Lipp, J. S., Holler, T., Teske, A., Hinrichs, K. U.: Sta­ble car­bon iso­to­pe pro­bing of in­tact po­lar li­pids from bent­hic ar­chaea in ma­ri­ne sub­sur­face se­di­ment. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A767 (2009).  ResearchGate
Lopez, O., Zuddas, P., Faivre, D.: The in­flu­ence of tem­pe­ra­tu­re and sea­wa­ter com­po­si­ti­on on cal­ci­te crys­tal growth me­cha­nisms and ki­ne­tics: Im­pli­ca­ti­ons for Mg in­cor­po­ra­ti­on in cal­ci­te lat­ti­ce. Geochi­mi­ca et Cos­mochi­mi­ca Acta 73(2):337-347 (2009).  ScienceDirect
Musat, F., Galushko, A., Jacob, J., Widdel, F., Kube, M., Reinhardt, R., Wilkes, H., Schink, B., Rabus, R.: An­ae­ro­bic de­gra­da­ti­on of naph­tha­le­ne and 2-me­thyl­naph­tha­le­ne by strains of ma­ri­ne sul­fa­te-re­du­cing bac­te­ria. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(1):209–219 (2009).  PubMed
Strittmatter, A. W., H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R.Martinez-Arias, D. Bartels,  A. Goesmann, L. Krause, A. Pühler, H.-P. Klenk, M. Richter, M. Schüler, F. O. Glöckner,  A. Meyerdierks, G. Gottschalk and R. Amann: Ge­no­me se­quence of Desulfobacterium autotrophicum HRM2, a ma­ri­ne sul­fa­te re­du­cer oxi­di­zing or­ga­nic car­bon com­ple­te­ly to car­bon di­oxi­de. En­vi­ron. Mi­cro­bi­ol. 11(5):1038-1055 (2009).  PubMed  Full Text
Tamang, D.G., R. Rabus, R.D. Barabote and M.H. Saier, Jr.: Com­pre­hen­si­ve ana­ly­ses of trans­port pro­te­ins en­coded wi­t­hin the ge­no­me of "Aromatoleum aromaticum" strain EbN1. J. Mem­br. Biol. 229(2):53-90 (2009).  PubMed
Wecker, P., C. Klockow, A. Ellrott, C. Quast, P. Langhammer, J. Harder and F. O. Glöckner: Tran­scrip­tio­nal re­s­pon­se of the mo­del planc­to­my­ce­te Rhodopirellula baltica SH1T to chan­ging en­vi­ron­men­tal con­di­ti­ons. BMC Ge­no­mics 10:410 (doi:10.1186/​1471-2164-10-410) (2009).  PubMed  Full Text
Wietz, M., Hall, M. R., Høj, L.: Ef­fects of sea­wa­ter ozona­ti­on on bio­film de­ve­lop­ment in aqua­cul­tu­re tanks. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 32:266–277 (2009).  PubMed
Winkelmann, N. and J. Harder: An im­pro­ved iso­la­ti­on me­thod for at­ta­ched-li­ving Planc­to­my­ce­tes of the ge­nus Rhodopirellula. J. Mi­crob. Meth. 77:276-284 (2009).  PubMed
Wöhlbrand, L. and Rabus R.: De­ve­lop­ment of a Ge­ne­tic Sys­tem for the De­ni­tri­fy­ing Bac­te­ri­um ‘ Aromatoleum aromaticum ′ Strain EbN1. J. Mol. Mi­cro­bi­ol. Bio­tech­nol. 17:41–52 (2009).  PubMed
Yan, S., B.M. Fuchs, S. Lenk, J. Harder, J. Wulf, N.-Z. Jiao and R. Amann: Bio­geo­gra­phy and phy­lo­ge­ny of the NOR5/​OM60 cla­de of Gammaproteobacteria. Syst. Appl. Mi­cro­bi­ol. 32:124-139 (2009).  PubMed
Zech, H., S. Thole, K. Schreiber, D. Kalhöfer, S. Voget, T. Brinkhoff, M. Simon, D. Schomburg and R. Rabus: Growth pha­se-de­pen­dent glo­bal pro­te­in and me­ta­bo­li­te pro­files of Phaeobacter gallaeciensis strain DSM 17395, a mem­ber of the ma­ri­ne Roseobacter-cla­de. Pro­teo­mics 9:3677-3697 (2009).  PubMed
B.Sc theses
Dörries, Marvin: Wachs­tum des de­ni­tri­fi­zie­ren­den Bak­te­ri­ums Aromatoleum aromaticum Stamm EbN1 im Che­mostat: HPLC und mem­bran­pro­teo­mi­sche Un­ter­su­chun­gen. Ba­che­lor the­sis, Uni­ver­si­tät Ol­den­burg (2009), 68pp.
Winterling, Saskia: Ganz-Zell-Hy­bri­di­sie­rungs- und durch­fluss­zy­to­me­tri­sche Un­ter­su­chun­gen von Che­mosta­ten­pro­ben des De­ni­tri­fi­zie­rers "Aromatoleum aromaticum" Stamm EbN1. Ba­che­lor the­sis, Uni­ver­si­tät Ol­den­burg  (2009), 47pp.
M.Sc. theses
Hahnke, Richard: In­ves­ti­ga­ti­on of the struc­tu­re and func­tion of mi­cro­bi­al po­pu­la­ti­ons in the South Pa­ci­fic se­di­ment. Mas­ter The­sis, Uni­ver­si­ty of Ap­p­lied Sci­en­ces Gel­sen­kir­chen Reck­ling­hau­sen (2009), 50pp.
Lahme, Sven: An­ae­ro­be Kul­ti­vie­rung des de­ni­tri­fi­zie­ren­den Bak­te­ri­ums Aromatoleum aromaticum Stamm EbN1 im Che­mosta­ten: Ace­tat-li­mi­tier­tes Wachs­tum und In­duk­ti­on der Ben­zoat-Ver­wer­tung . Di­plom­ar­beit, Uni­ver­si­tät Bre­men  Bre­men, Bre­men (2009), 109pp.
Ph.D. theses
Basen, Mirko: Bio­che­mie und Phy­sio­lo­gie der Sul­fat­re­duk­ti­on in der an­ae­ro­ben Oxi­da­ti­on von Me­than. Uni­ver­si­tät Bre­men, Bre­men (2009), 166pp.
Brodkorb, Danny: Die Li­n­a­lool-De­hy­dra­ta­se-Iso­me­ra­se aus dem ni­tratre­du­zie­ren­den Beta­pro­te­ob­ak­te­ri­um Castellaniella defragrans 65­Phen. Uni­ver­si­ty of Bre­men, Bre­men (2009), 113pp.
Meyer, Birte: Die dis­si­mi­la­to­ri­sche APS-Re­duk­ta­se – Vor­kom­men, Phy­lo­ge­nie, Struk­tur und An­wen­dung in der funk­tio­nel­len Gen­ana­ly­se. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 346pp.
Rotaru, Amelia: An­ae­ro­bic de­gra­da­ti­on of li­mo­ne­ne and p-xy­le­ne in freshwa­ter en­rich­ment cul­tu­res. PhD the­sis, Mar­Mic,  Uni­ver­si­ty of Bre­men, Bre­men (2009), 155pp.
Werner, Insa: Un­ter­su­chun­gen zum Stoff­wech­sel des an­ae­ro­ben Al­kan­ab­baus. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 133pp.
Winkelmann, Nadine: Iso­lie­rung und ge­ne­ti­sche Cha­rak­te­ri­sie­rung von Stäm­men des Planc­to­my­ce­ten­ge­nus Rhodopirellula und die Bio­geo­gra­phie in eu­ro­päi­schen Ge­wäs­sern. Uni­ver­si­ty of Bre­men, Bre­men (2009), 161pp.

Mi­cro­sen­sor Group

Beck, A.J., Janssen F., Polerecky .L, Herlory O. and de Beer D.: Pho­to­tro­phic bio­film ac­tivi­ty and dy­na­mics of di­ur­nal Cd cy­cling in a freshwa­ter stream. Env. Sci. Tech­nol. 43:7245-7251 (2009).  PubMed
Beutler, M., Hinck S. and de Beer D.: A me­thod for ima­ging of low pH in live cells ba­sed on ex­ci­ted sta­te sa­tu­ra­ti­on. J. Mi­crob. Meth. 77:98-101 (2009).  PubMed
Boetius, A., de Beer, D., Haeckel, M., Mertens, C., Inagaki, F., Nakamura, K., Rehder, G.: CO2 le­a­ka­ge in the deep oce­an and its ef­fect on bent­hic fau­na. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A132 (2009).  ResearchGate
Brown, M.V.,  G.K. Philip, J.A. Bunge, M.C. Smith, A. Bissett, F.M. Lauro, J.A. Fuhrman and S.P. Donachie: Mi­cro­bi­al com­mu­ni­ty struc­tu­re in the North Pa­ci­fic oce­an. The ISME Jour­nal 3:1374-1386 (2009).  PubMed  Full Text
de Beer, D., Haeckel, M., Boetius, A.: In situ mea­su­re­ments of po­re­wa­ter che­mis­try in ex­tre­me­ly CO2 rich se­di­ments from a hydro­ther­mal vent. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A270 (2009). Full Text
Duperron, S., D. de Beer, M. Zbinden, A. Boetius, V. Schipani, N. Kahil and F. Gaill: Mole­cu­lar cha­rac­te­riza­t­i­on of bac­te­ria as­so­cia­ted with the tro­pho­so­me and the tube of  Lamellibrachia sp., a si­bog­li­nid an­ne­l­id from cold seeps in the eas­tern Me­di­ter­ra­ne­an. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 69:395-409 (2009).  PubMed
Jansen, S., Walpersdorf E., Werner U., Billerbeck M., Böttcher M., and de Beer D.: Func­tio­n­ing of in­terti­dal flats in­fer­red from tem­po­ral and spa­ti­al dy­na­mics of O2, H2S and pH in their sur­face se­di­ments. Oce­an Dy­na­mics 59:317-332 (2009).  Springer  Full Text
Leblanc, K., Hare, C. E., Feng, Y., Berg, G. M., DiTullio, G. R., Neeley, A., Benner, I., Sprengel, C., Beck, A., Sanudo-Wilhelmy, S. A., Passow, U., Klinck, K., Rowe, J. M., Wilhelm, S. W., Brown, C. W., Hutchins, D. A.: Dis­tri­bu­ti­on of cal­ci­fy­ing and si­li­ci­fy­ing phy­to­plank­ton in re­la­ti­on to en­vi­ron­men­tal and bio­geo­che­mi­cal pa­ra­me­ters du­ring the late sta­ges of the 2005 North East At­lan­tic Spring Bloom. Bio­geo­sci­en­ces 6:2155–2179 (2009).  Trace  Full Text
Nielsen, M., Gieseke A., de Beer D., and Revsbech N.P.: Ni­tra­te, ni­tri­te, and ni­trous oxi­de trans­for­ma­ti­ons in se­di­ments along a sal­in­i­ty gra­di­ent in the We­ser Es­tua­ry. Aq. Mi­crob. Ecol. 55:39-52 (2009).  AME
Polerecky, L., Bissett A., Al-Najjar M., Faerber P., Osmers H., Suci P.A., Stoodley P. and de Beer D.: Mo­du­lar spec­tral ima­ging sys­tem for dis­cri­mi­na­ti­on of pig­ments in cells and mi­cro­bi­al com­mu­nities. Appl. En­vi­ronm. Mi­cro­bi­ol. 75(3):758-771 (2009).  PubMed  Full Text
Polerecky, L., J.M. Klatt, M. Al-Najjar, and D. de Beer: Hy­per-spec­tral ima­ging of bio­film growth dy­na­mics. First Work­shop on Hy­per­spec­tral Image and Si­gnal Pro­ces­sing: Evo­lu­ti­on in Re­mo­te Sen­sing, Whis­pers (doi:10.1109/​WHIS­PERS.2009.5288974):1-4 (2009).  IeeExplore
Robinson, N. J., Thatje, S., Osseforth, C.: Heart­beat sen­sors un­der pres­su­re: a new me­thod for as­ses­sing hy­per­ba­ric phy­sio­lo­gy. High Pres­su­re Re­se­arch 29(3):422-430 (2009).  TFO
Schreiber, F., Loeffler B., Polerecky L., Kuypers M.M.M., and de Beer D.: Me­cha­nisms of tran­si­ent nitric oxi­de and ni­trous oxi­de pro­duc­tion in a com­plex bio­film. ISME J 3:1301-1313 (2009).  PubMed  Full Text
Stoodley, P., de Beer D., Longwell M., Nistico L., Hall-Stoodley L., Wenig B., and Krespi Y.P.: Ton­sil­lo­lith: Not just a sto­ne but a li­ving bio­film. Oto­la­ryn­go­lo­gy - Head and Neck Sur­ge­ry 141:316-321 (2009).  PubMed
Yanagawa, K., Sunamura, M., Morono, Y., Futagami, T., de Beer, D., Urabe, T., Boetius, A., Inagaki, F.: Dis­tri­bu­ti­on of me­ta­bo­li­cal­ly ac­tive mi­cro­bi­al com­mu­nities in CO2-rich ma­ri­ne se­di­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1472 (2009).  ResearchGate
M.Sc theses
Carstensen, Rebecca: Pho­to­phy­sio­lo­gi­cal re­s­pon­ses of the cal­ci­fy­ing, green ma­cro­al­ga Hali­me­da op­un­tia to shif­ting pH re­gimes. Mas­ter the­sis, Mar­Mic, Uni­ver­si­ty of Bre­men, Bre­men (2009), 37pp.
Hohmann, Tine: Ein­fluss von Licht auf das Mi­gra­ti­ons­ver­hal­ten ei­nes ma­ri­nen Beggiatoa Stam­mes. Di­plom­ar­beit Uni­ver­si­tät Bre­men, Bre­men (2009), 89pp.
Klatt, J. M.: Role of Light in Oxy­gen and Car­bon Cy­cling by An­oxy­ge­nic Pho­to­tro­phs in Mi­cro­bi­al Mats. Mas­ter the­sis, Mar­Mic, Uni­ver­si­ty of Bre­men, Bre­men (2009), 91pp.
Ph.D. theses
Bachar, Ami: Pho­to­tro­phic Chloroflexus-like bac­te­ria and their role in hy­per­sa­li­ne mi­cro­bi­al mats. Dis­ser­ta­ti­on Uni­ver­si­ty of Bre­men, Bre­men (2009), 120pp.
Lichtschlag, Anna: In situ quan­ti­fi­ca­ti­on of bio­geo­che­mi­cal pro­ces­ses at cold seeps. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 211pp.
Schreiber, Frank: De­tec­ting and Un­der­stan­ding Nitric Oxi­de For­ma­ti­on du­ring Ni­tro­gen Cy­cling in Mi­cro­bi­al Bio­films. PhD the­sis, Mar­Mic,  Uni­ver­si­tät Bre­men, Bre­men (2009), 154pp.
Weber, Miriam: How se­di­ment da­mages co­rals. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 186pp.

De­part­ment of Mole­cu­lar Eco­lo­gy

Buck, U., H.-P. Grossart, R. Amann and J. Pernthaler: Sub­stra­te in­cor­po­ra­ti­on pat­terns of bac­te­rio­plank­ton po­pu­la­ti­ons in stra­ti­fied and mi­xed wa­ters of a hu­mic lake. En­vi­ron. Mi­cro­bi­ol. 11(7):1854-1865 (2009).  PubMed
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M.M.M. Kuypers and F. Widdel: Sub­stan­ti­al 13C/12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vi­tro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(5):370-376 (2009).  PubMed
Jogler, C., W. Lin, A. Meyerdierks, M. Kube, E. Katzmann, C. Flies, Y.X. Pan, R. Amann, R. Reinhardt and D. Schüler: Toward clo­n­ing of the ma­gne­tot­ac­tic me­ta­ge­no­me: Iden­ti­fi­ca­ti­on of ma­gne­to­so­me is­land gene clus­ters in un­cul­ti­va­ted ma­gne­tot­ac­tic bac­te­ria from dif­fe­rent aqua­tic se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 75(12):3972-3979 (2009).  PubMed  Full Text
Knittel, K. and A. Boetius: An­ae­ro­bic oxi­da­ti­on of me­tha­ne: pro­gress with an un­k­nown pro­cess. An­nu­al Re­view of Mi­cro­bio­lo­gy 63:311-334 (2009).
Lam, P., G. Lavik, M.M. Jensen, J. van de Vossenberg, M. Schmid, D. Woebken, D. Guitérrez, R. Amann, M.S.M. Jetten and M.M.M. Kuypers: Re­vi­sing the ni­tro­gen cy­cle in the Pe­ru­vi­an oxy­gen mi­ni­mum zone. PNAS 106(12):4752-4757 (2009).  PubMed
Lavik, G., T. Stührmann, V. Brüchert, A. Van der Plas, V. Mohrholz, P. Lam,  M. Mußmann, B.M. Fuchs, R. Amann, U. Lass and M.M.M. Kuypers: De­to­xi­fi­ca­ti­on of sulph­idic Af­ri­can shelf wa­ters by bloo­m­ing che­mo­lit­ho­tro­phs. Na­tu­re 457:581-585 (2009).  PubMed
Liebner, S., Rublack, K., Stührmann, T., Wagner, D.: Di­ver­si­ty of Ae­ro­bic Me­tha­notro­phic Bac­te­ria in a Per­ma­frost Ac­tive Lay­er Soil of the Lena Del­ta, Si­be­ria. Mi­crob. Ecol. 57:25–35 (2009).  PubMed   Full Text
Niemann, H., D. Fischer, D. Graffe, K. Knittel, A. Montiel, O. Heilmayer, K. Nöthen, T. Pape, S. Kasten, G. Bohrmann, A. Boetius and J. Gutt: Bio­geo­che­mis­try of a low-ac­tivi­ty cold seep in the Lar­sen B area, wes­tern Wed­dell Sea, Ant­arc­tica. Bio­geo­sci­en­ces 6:2383-2395 (2009).  PubMed  Full Text
Schattenhofer, M., B. Fuchs, R. Amann, G. Tarran, M. Zubkov and J. Pernthaler: La­ti­tu­di­nal dis­tri­bu­ti­on of pro­ka­ryo­tic pi­co­plank­ton po­pu­la­ti­ons in the At­lan­tic Oce­an. En­vi­ron. Mi­cro­bi­ol. 11(8):2078-2093 (2009).  PubMed
Serrano, W., R. Amann and U. Fischer: A new mo­dera­te­ly ther­mo­phi­lic and high sul­fi­de to­le­rant bio­ty­pe of Marichromatium gracile, iso­la­ted from ti­d­al se­di­ments of the­Ger­man Wad­den Sea: Marichromatium gracile bio­ty­pe ther­mo­sul­fi­di­philum. Syst. Appl. Mi­cro­bi­ol. 32:1-7 (2009).  PubMed
Spring, S., H. Lünsdorf, B. M. Fuchs and B. J. Tindall: The pho­to­syn­the­tic ap­pa­ra­tus and its re­gu­la­ti­on in the ae­ro­bic Gam­ma­pro­te­ob­ac­te­ri­um Congregibacter litoralis gen. nov., sp. nov. PLoS ONE 4(3):e4866 (doi:10.1371/​jour­nal.pone.0004866) (2009).  PubMed  Full Text
Strittmatter, A. W., H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W. F. Fricke, R.Martinez-Arias, D. Bartels,  A. Goesmann, L. Krause, A. Pühler, H.-P. Klenk, M. Richter, M. Schüler, F. O. Glöckner,  A. Meyerdierks, G. Gottschalk and R. Amann: Ge­no­me se­quence of Desulfobacterium autotrophicum HRM2, a ma­ri­ne sul­fa­te re­du­cer oxi­di­zing or­ga­nic car­bon com­ple­te­ly to car­bon di­oxi­de. En­vi­ron. Mi­cro­bi­ol. 11(5):1038-1055 (2009).  PubMed  Full Text
Yan, S., B. M. Fuchs, S. Lenk, J. Harder, J. Wulf, N.-Z. Jiao and R. Amann: Bio­geo­gra­phy and phy­lo­ge­ny of the NOR5/​OM60 cla­de of Gam­ma­pro­te­ob­ac­te­ria. Syst. Appl. Mi­cro­bi­ol. 32:124-139 (2009).  PubMed
Diploma, B.Sc and M.Sc theses
Thiele, Stefan: Chan­ges in the bac­te­ri­al com­mu­ni­ty du­ring the iron fer­ti­liza­t­i­on ex­pe­ri­ment LO­HAFEX. Mas­ter the­sis, Uni­ver­si­tät Os­na­brück, Os­na­brück (2009), 75pp.
Winkel, Matthias: Ni­tri­fi­zie­ren­de Mi­kro­or­ga­nis­men in hydro­ther­ma­len Sys­te­men des Gu­ay­mas Be­ckens. Di­plom­ar­beit Uni­ver­si­tät Bre­men, Bre­men (2009), 100pp.
Zerjatke, Katrice: Mi­kro­au­to­ra­dio­gra­phie und Ge­n­ex­pres­si­on von Bak­te­ri­en im Ober­flä­chen­s­edi­ment der Ge­zei­ten­zo­ne des Wat­ten­mee­res. Di­plom­ar­beit Uni­ver­si­tät Bre­men, Bre­men  (2009), 103pp.
Ph.D. theses
Arnds, Julia: Mole­cu­lar cha­rac­te­riza­t­i­on of mi­cro­bi­al po­pu­la­ti­ons in me­tha­ne-rich ma­ri­ne ha­bi­tats. PhD the­sis, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009).
Schattenhofer, Martha: Dis­tri­bu­ti­on of ma­jor bac­te­rio­plank­ton groups in the At­lan­tic Oce­an. Uni­ver­si­tät Bre­men, Bre­men (2009), 184pp.
Stührmann, Torben: Der bak­te­ri­el­le Schwe­fel­kreis­lauf im Ben­gue­la-Auf­triebs­ge­biet. Dis­ser­ta­ti­on, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009).
Serrano, Wilbert: A mul­ti-gene ap­proach in the sys­te­ma­tics of the pho­to­tro­phic pur­p­le sul­fur bac­te­ria ge­ne­ra Marichromatium and Allochromatium with de­scrip­ti­on of the new spe­cies Allochromatium humboldtianum and the new bio­ty­pe Marichromatium gracile bio­ty­pe thermosulfidiphilum. PhD the­sis, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009), 158pp.
Yan, Shi: Mole­cu­lar Eco­lo­gy of the NOR5/​OM60 group of Gam­ma­pro­te­ob­ac­te­ria. PhD the­sis, Mar­Mic, Uni­ver­si­tät Bre­men, Bre­men (2009), 131pp.

Nut­ri­ent Group

Ettwig, K. F., Pol, A., Butler, M. K., Le Paslier, D., Kuypers, M. M. M., op den Camp, H. J. M., Jetten, M. S. M., Strous, M.: What is ex­tre­me? Me­tha­notro­phy at pH 1 or wi­thout oxy­gen? Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A342 (2009). Full Text
Galán, A., V. Molina, B. Thamdrup, D. Woebken, G. Lavik,  M.M.M. Kuypers and O. Ulloa: Anam­m­ox bac­te­ria and the an­ae­ro­bic oxi­da­ti­on of am­mo­ni­um in the oxy­gen mi­ni­mum zone off nort­hern Chi­le. Deep Sea Re­se­arch Part II 56:1021-1031.  ScienceDirect
Halm, H., N. Musat, P. Lam, R. Langlois, F. Musat, S. Peduzzi, G. Lavik, C.J. Schubert, B. Sinha, J. LaRoche and M.M.M. Kuypers: Co-oc­cur­rence of de­ni­tri­fi­ca­ti­on and ni­tro­gen fixa­ti­on in a mero­mic­tic lake, Lake Ca­da­g­no (Swit­z­er­land). En­vi­ron­men­tal Mi­cro­bio­lo­gy 11:1945-1958 (2009).  PubMed
Hamersley, M.R., Woebken, D., Boehrer, B., Schultze, M., Lavik, G. and Kuypers, M.M.M.: Wa­ter co­lumn anam­m­ox and de­ni­tri­fi­ca­ti­on in a tem­pe­ra­te per­man­ent­ly stra­ti­fied lake (Lake Rass­nit­zer, Ger­ma­ny). Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 32:571-582 (2009).  PubMed
Hoffmann, F., R. Radax, D. Woebken, M. Holtappels, G. Lavik, H.T. Rapp, M.-L. Schläppy, C. Schleper, M.M.M. Kuypers: Com­plex ni­tro­gen cy­cling in the spon­ge Geodia barretti. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(9):2228-2243 (2009).  PubMed
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M.M.M. Kuypers and F. Widdel: Sub­stan­ti­al 13C/12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vi­tro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1(5):370-376 (2009).  PubMed
Holtappels, M., M. Stubbe, J. Gimsa: ac-field-in­du­ced flu­id pum­ping in mi­cro­sys­tems with asym­metric tem­pe­ra­tu­re gra­di­ents. Phy­si­cal Re­view E 79:026309 (doi: 10.1103/​Phys­Re­vE.79.026309) (2009).  PubMed
Kraal, P., C.P. Slomp, A. Forster, M.M.M. Kuypers, A. Sluijs: Py­ri­te oxi­da­ti­on du­ring samp­le sto­r­a­ge de­ter­mi­nes phos­pho­rus frac­tio­na­ti­on in car­bo­na­te-poor an­oxic se­di­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta 73:3277-3290 (2009).  ScienceDirect
Lam, P., G. Lavik, M.M. Jensen, J. van de Vossenberg, M. Schmid, D. Woebken, D. Guitérrez, R. Amann, M.S.M. Jetten and M.M.M. Kuypers: Re­vi­sing the ni­tro­gen cy­cle in the Pe­ru­vi­an oxy­gen mi­ni­mum zone. PNAS 106(12):4752-4757 (2009).  PubMed  Full Text
Lavik, G., T. Stührmann, V. Brüchert, A. Van der Plas, V. Mohrholz, P. Lam,  M. Mußmann, B.M. Fuchs, R. Amann, U. Lass and M.M.M. Kuypers: De­to­xi­fi­ca­ti­on of sulph­idic Af­ri­can shelf wa­ters by bloo­m­ing che­mo­lit­ho­tro­phs. Na­tu­re 457:581-585 (2009).  PubMed
Naqvi, S. W. A., Naik, H., Pratihary, A. K., Narvenkar, G., Roy, R., Thorat, B. R., Kurian, S., Gauns, M., Narvekar, P. V.: In­ten­si­fi­ca­ti­on of sea­so­nal oxy­gen-de­fi­ci­ent zone over the wes­tern In­dian shelf. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A930 (2009).  ResearchGate
Schreiber, F., B. Loeffler, L. Polerecky, M.M.M. Kuypers, D. de Beer: Me­cha­nisms of tran­si­ent nitric oxi­de and ni­trous oxi­de pro­duc­tion in a com­plex bio­film. The ISME Jour­nal 3:1301-1313 (2009).  PubMed  Full Text
Diploma and M.Sc theses
Adam, Birgit: Bal­tic cya­no­bac­te­ria Aphanizomenon sp. and the na­tu­re of their as­so­cia­tes. Di­plo­ma The­sis TU Berg­aka­de­mie Frei­berg: In­sti­tut für Bio­wis­sen­schaf­ten (2009), 98pp.
Kalvelage, Tim: Ni­tro­gen los­ses and nut­ri­ent re­ge­ne­ra­ti­on in oxy­gen de­fi­ci­ent wa­ters. Mar­Mic, Mas­ter The­sis/ PhD pro­po­sal (2009), 29pp.
Sheik, Abdul Rahiman: The ef­fect of vi­ru­s­es on pro­ka­ryo­tic and eu­ka­ryo­tic nut­ri­ent as­si­mi­la­ti­on. Mar­Mic, Mas­ter the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2009), 43pp.
Sokoll, Sarah: Pro­ces­ses of Ni­tro­gen Loss on the Ma­kran Shelf in the Ara­bi­an Sea. Di­plo­ar­beit, Uni­ver­si­tät Ros­tock (2009), 84pp.
Ph.D. theses
Halm, Hannah: Ni­tro­gen As­si­mi­la­ti­on by Aqua­tic Pro­ka­ryo­tes. Dis­ser­ta­ti­on Uni­ver­si­tät Bre­men, Bre­men (2009), 99pp.

Mi­cro­bi­al Fit­ness Group

Dutilh, B.E. , M.A. Huynen and M. Strous: In­cre­a­sing the co­ver­age of a me­ta­po­pu­la­ti­on con­sen­sus ge­no­me by ite­ra­ti­ve read map­ping and as­sem­bly. Bio­in­for­ma­tics 25(21):2878–2881 (2009).  PubMed  Full Text
van Niftrik, L., Geerts, W. J. C., van Donselaar, E. G., Humbel, B. M., Webb, R. I., Harhangi, H. R., den Camp, H. J. M. O., Fuerst, J. A., Verkleij, A. J., Jetten, M. S. M., Strous, M.: Cell di­vi­si­on ring, a new cell di­vi­si­on pro­te­in and ver­ti­cal in­heri­t­an­ce of a bac­te­ri­al or­ga­nel­le in anam­m­ox planc­to­my­ce­tes. Mole­cu­lar Mi­cro­bio­lo­gy 73(6):1009–1019 (2009).  PubMed

Ma­ri­ne Geo­che­mis­try

Dittmar, T.: Dem Koh­len­stoff im Meer auf der Spur. Nach­rich­ten aus der Che­mie 57:387-391 (2009).  Wiley
Dittmar, T. and Paeng J.: A heat-in­du­ced mole­cu­lar si­gna­tu­re in ma­ri­ne dis­sol­ved or­ga­nic mat­ter. Na­tu­re Geo­sci­ence 2:175-179 (2009).  Nature
Dittmar, T., Koch B.P. and Jaffé R.: Chap­ter 12. Tools for stu­dy­ing bio­geo­che­mi­cal con­nec­tivi­ty among tro­pi­cal co­as­tal eco­sys­tems. pp. 425-456 In: Eco­lo­gi­cal in­ter­ac­tions among tro­pi­cal co­as­tal eco­sys­tems. Na­gel­kerken I. (ed.), Sprin­ger (2009).  Springer
Dittmar, T., Cherrier J. and Ludwichowski K.U.: Chap­ter 4. The ana­ly­sis of ami­no acids in sea­wa­ter. pp. 67-78  In: Prac­tical gui­de­li­nes for the ana­ly­sis of sea­wa­ter. Wurl O. (ed.) , CRC Press (2009).  CRCnetBASE
Feseker, T., Pape T., Wallmann K., Klapp S.A., Schmidt-Schierhorn F., Bohrmann G.: The ther­mal struc­tu­re of the Dvu­re­chens­kii mud vol­ca­no and its im­pli­ca­ti­ons for gas hy­dra­te sta­bi­li­ty and erup­ti­on dy­na­mics. Ma­ri­ne and pe­tro­le­um geo­lo­gy 26(9):1812-1823 (2009).  ScienceDirect
Rabus, R., Wilkes, H., Widdel, F.: Pro­teo­ge­no­mic in­sights into an­ae­ro­bic bio­de­gra­da­ti­on of hy­dro­c­ar­bons. Geochi­mi­ca et Cos­mochi­mi­ca Acta, Gold­schmidt Con­fe­rence Ab­stracts 73 (13,Sup­pl. S): A1065 (2009).  Springer
Wöhlbrand, L. and Rabus R.: De­ve­lop­ment of a Ge­ne­tic Sys­tem for the De­ni­tri­fy­ing Bac­te­ri­um  Aromatoleum aromaticum  Strain EbN1. J. Mol. Mi­cro­bi­ol. Bio­tech­nol. 17:41–52 (2009).  PubMed

Sym­bio­sis Group

Haase, K.M. , A. Koschinsky, S. Petersen, C.W. Devey, C. German, K.S. Lackschewitz, B. Melchert, R. Seifert, C. Borowski, O. Giere, H. Paulick and M64/1, M68/1 and M78/2 Scientific Parties: Di­king, young vol­ca­nism and dif­fu­se hydro­ther­mal ac­tivi­ty on the sou­thern Mid-At­lan­tic Ridge: The Lil­li­put field at 9°33'S. Ma­ri­ne Geo­lo­gy 266: 52–64 (2009).  ScienceDirect
Petersen, S., Kuhn, K., Kuhn, T., Augustin, N., Hékinian, R., Franz, L., Borowski, C.: The geo­lo­gi­cal set­ting of the ul­tra­ma­fic-hosted Lo­gat­chev hydro­ther­mal field (14 de­grees 45 ' N, Mid-At­lan­tic Ridge) and its in­flu­ence on mas­si­ve sul­fi­de for­ma­ti­on. Li­thos 112:40–56 (2009).  ResearchGate  Full Text
Petersen, J.M. and Dubilier N.: Me­tha­notro­phic sym­bio­ses in ma­ri­ne in­ver­te­bra­tes. En­vi­ron. Mi­cro­bi­ol. Re­ports 1(5): 319-335 (2009).  PubMed
Zielinski, F. U., Pernthaler, A., Duperron, S., Raggi, L., Giere, O., Borowski, C., Dubilier, N.: Wi­de­s­pre­ad oc­cur­rence of an in­tra­nu­cle­ar bac­te­ri­al pa­ra­si­te in vent and seep ba­thy­mo­dio­lin mus­sels. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11(5):1150–1167 (2009).  PubMed
Ph.D. theses
Bergin, Claudia: Phy­lo­ge­ne­tic di­ver­si­ty and me­ta­bo­lic ver­sa­ti­li­ty of the bac­te­ri­al en­do­sym­bi­onts in ma­ri­ne gut­less oli­gochae­te worms. Dis­ser­ta­ti­on, Mar­Mic, Uni­ver­si­ty of Bre­men, Bre­men (2009), 203pp.
Petersen, Jillian M.: Di­ver­si­ty and eco­lo­gy of che­mo­syn­the­tic sym­bio­ses in deep-sea in­ver­te­bra­tes. Dis­ser­ta­ti­on, Mar­Mic, Uni­ver­si­ty of Bre­men, Bre­men (2009), 230pp.
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