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Pu­bli­ka­tio­nen 2011

Pu­bli­ka­tio­nen 2011

De­part­ment of Bio­geo­che­mis­try

Abed, R.M.M., N. Musat, F. Musat and M. Mussmann: Struc­tu­re of mi­cro­bi­al com­mu­nities and hy­dro­c­ar­bon-de­pen­dent sul­fa­te re­duc­tion in the an­oxic lay­er of a pol­lu­ted mi­cro­bi­al mat. In: Ma­ri­ne Pol­lu­ti­on Bul­le­tin 62, pp. 539-546 (2011). doi:10.1016/​j.mar­pol­bul.2010.11.030.  PuRe
Bera, P., J. Kumar and A. Khalili: Hot springs me­dia­te spa­ti­al ex­ch­an­ge of heat and mass in the en­clo­sed se­di­ment do­main: A sta­bi­li­ty per­spec­tive. In: Ad­van­ces in Wa­ter Re­sour­ces 34, pp. 817-828 (2011). doi:10.1016/​j.advwa­tres.2011.02.003.  PuRe
Dunker, R., H. Roy, A. Kamp and B.B. Jørgensen: Mo­ti­li­ty pat­terns of fil­amen­tous sul­fur bac­te­ria, Beggia­toa spp.. In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 77, pp. 176-185 (2011). doi:10.1111/​j.1574-6941.2011.01099.x.  PuRe
Eckert, T., B. Brunner, E.A. Edwards and U.G. Wortmann: Mi­cro­bi­al­ly me­dia­ted re­oxi­da­ti­on of sul­fi­de du­ring dis­si­mi­la­to­ry sul­fa­te re­duc­tion by Des­ul­fo­bac­ter la­tus. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 75, pp. 3469 – 3485 (2011). doi:10.1016/​j.gca.2011.03.034.  ScienceDirect
Enge, A.J., H. Nomaki, N.O. Ogawa, U. Witte, M.M. Moeseneder, G. Lavik, N. Ohkouchi, H. Kitazato, M. Kucera and P. Heinz: Re­s­pon­se of the bent­hic fo­ra­mi­ni­fe­ral com­mu­ni­ty to a si­mu­la­ted short-term phy­to­de­t­ri­tus pul­se in the abys­sal North Pa­ci­fic. In: Ma­ri­ne Eco­lo­gy-Pro­gress Se­ries 438, pp. 129-142 (2011). doi:10.3354/​mep­s09298.  MEPS  Full Text
Foster, R.A., M.M.M. Kuypers, T. Vagner, R.W. Paerl, N. Musat and J.P. Zehr: Ni­tro­gen fixa­ti­on and trans­fer in open oce­an dia­tom-cya­no­bac­te­ri­al sym­bio­ses. In: The ISME Jour­nal 5, pp. 1484-1493 (2011). doi:10.1038/​is­mej.2011.26.  PubMed  Full Text
Goldhammer, T., B. Brunner, S.M. Bernasconi, T.G. Ferdelman and M. Zabel: Phos­pha­te oxy­gen iso­topes: In­sights into se­di­men­ta­ry phos­pho­rus cy­cling from the Ben­gue­la up­wel­ling sys­tem. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 75, pp. 3741 – 3756 (2011). doi:DOI: 10.1016/​j.gca.2011.04.006.  ScienceDirect
Goldhammer, T., T. Max, B. Brunner, F. Einsiedl and M. Zabel: Ma­ri­ne se­di­ment pore-wa­ter pro­files of phos­pha­te d18O using a re­fi­ned mi­cro-extrac­tion. In: Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 9, pp. 110-120 (2011). doi:10:4319/​lom.2011.9.110.  ASLO  Full Text
Henkel, S. et al.: An in­ter­di­sci­pli­na­ry in­ves­ti­ga­ti­on of a re­cent sub­ma­ri­ne mass trans­port de­po­sit at the con­ti­nen­tal mar­gin off Uru­gu­ay. In: Geo­che­mis­try, Geo­phy­sics, Geo­sys­te­my, 12, Q08009 (2011). doi:10.1029/​2011G­C003669.  Wiley  Full Text
Holler, T., G. Wegener, H. Niemann, C. Deusner, T.G. Ferdelman, A. Boetius, B. Brunner and F. Widdel: Car­bon and sul­fur back flux du­ring an­ae­ro­bic mi­cro­bi­al oxi­da­ti­on of me­tha­ne and cou­p­led sul­fa­te re­duc­tion. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the U.S.A. 108, pp. E1484–E1490 (2011). doi:10.1073/​pnas.1106032108.  PubMed  Full Text
Holmkvist, L., T.G. Ferdelman and B.B. Jørgensen: A cryp­tic sul­fur cy­cle dri­ven by iron in the me­tha­ne zone of ma­ri­ne se­di­ment (Aar­hus Bay, Den­mark). In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 75, pp. 3581-3599 (2011). doi:10.1016/​j.gca.2011.03.033.  ScienceDirect
Holmkvist, L., A. Kamyshny, C. Vogt, K. Vamvakopoulos, T.G. Ferdelman and B.B. Jorgensen: Sul­fa­te re­duc­tion be­low the sul­fa­te-me­tha­ne tran­si­ti­on in Black Sea se­di­ments. In: Deep-Sea Rea­se­arch Part I-Ocea­no­gra­phic Re­se­arch Pa­pers 58, pp. 493-504 (2011). doi:10.1016/​j.dsr.2011.02.009.  ScienceDirect
Holtappels, M. and A. Lorke: Esti­ma­ting tur­bu­lent dif­fu­si­on in a bent­hic boun­da­ry lay­er. In: Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 9, pp. 29-41 (2011). doi:10.4319/​lom.2011.9.29.  ASLO  Full Text
Holtappels, M., M.M.M. Kuypers, M. Schlueter and V. Bruchert: Mea­su­re­ment and in­ter­pre­ta­ti­on of so­lu­te con­cen­tra­ti­on gra­di­ents in the bent­hic boun­da­ry lay­er. In: Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 9, pp. 1-13 (2011). doi:10.4319/​lom.2011.9.1.  ASLO  Full Text
Holtappels, M., G. Lavik, M.M. Jensen and M.M.M. Kuypers: (15)N-La­be­ling ex­pe­ri­ments to dis­sect the cont­ri­bu­ti­ons of he­te­ro­tro­phic de­ni­tri­fi­ca­ti­on and anam­m­ox to ni­tro­gen re­mo­val in the OMZ wa­ters of the oce­an. In: Me­thods in En­zy­mo­lo­gy: Re­se­arch on Ni­tri­fi­ca­ti­on and Re­la­ted Pro­ces­ses Part A vol. 486, edi­ted by M. G. Klotz, pp. 223-251 (2011).  PubMed
Jensen, M.M., P. Lam, N.P. Revsbech, B. Nagel, B. Gaye, M.S.M. Jetten and M.M.M. Kuypers:In­ten­si­ve ni­tro­gen loss over the Oma­ni Shelf due to anam­m­ox cou­p­led with dis­si­mi­la­to­ry ni­tri­te re­duc­tion to am­mo­ni­um. In: The ISME Jour­nal 5, pp. 1660-1670 (2011). doi:10.1038/​is­mej.2011.44.  PubMed  Full Text
Kalvelage, T., M.M. Jensen, S. Contreras, N.P. Revsbech, P. Lam, M. Günter, J. LaRoche, G. Lavik and M.M.M. Kuypers:Oxy­gen Sen­si­ti­vi­ty of Anam­m­ox and Cou­p­led N-Cy­cle Pro­ces­ses in Oxy­gen Mi­ni­mum Zo­nes. In: PLoS ONE 6, e29299 (2011). doi:10.1371/​jour­nal.pone.0029299.  PubMed  Full Text
Kamp, A., D. de Beer, J.L. Nitsch, G. Lavik and P. Stief: Dia­toms re­spi­re ni­tra­te to sur­vi­ve dark and an­oxic con­di­ti­ons. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the USA 108, pp. 5649-5654 (2011). doi:10.1073/​pnas.1015744108.  PubMed  Full Text
Lam, P. and M.M.M. Kuypers: Mi­cro­bi­al Ni­tro­gen Cy­cling Pro­ces­ses in Oxy­gen Mi­ni­mum Zo­nes. In: An­nu­al Re­view of Ma­ri­ne Sci­ence vol. 3, pp. 317-345 (2011).  PubMed
Lam, P., M.M. Jensen, A. Kock, K.A. Lettmann, Y. Plancherel, G. Lavik, H.W. Bange and M.M.M. Kuypers: Ori­gin and fate of the se­con­da­ry ni­tri­te ma­xi­mum in the Ara­bi­an Sea. In: Bio­geo­sci­en­ces 8, pp. 1565-1577 (2011). doi:10.5194/​bg-8-1565-2011.  Biogeosciences  Full Text
Lindtke, J., S.B. Ziegenbalg, B. Brunner, J.M. Rouchy, C. Pierre and J. Peckmann: Aut­hi­ge­ne­sis of na­ti­ve sulphur and do­lo­mi­te in a la­cus­tri­ne eva­po­ri­tic set­ting (Hel­lin ba­sin, Late Mio­ce­ne, SE Spain). In: Geo­lo­gi­cal Ma­ga­zi­ne 148, pp. 655-669 (2011). doi:10.1017/​S0016756811000124.  Cambridge Journals
Meister, P., M. Gutjahr, M. Frank, S.M. Bernasconi, C. Vasconcelos and J.A. McKenzie: Do­lo­mi­te for­ma­ti­on wi­t­hin the me­tha­no­ge­nic zone in­du­ced by tec­to­ni­cal­ly dri­ven fluids in the Peru ac­cre­tio­na­ry prism. In: Geo­lo­gy 39, pp. 563-566 (2011). doi:10.1130/​G31810.1.  IODP  Full Text
Meister, P., O. Johnson, F. Corsetti and K.H. Nealson: Ma­gne­si­um in­hi­bi­ti­on con­trols sphe­ri­cal car­bo­na­te pre­ci­pi­ta­ti­on in ul­tra­ba­sic spring­wa­ter (Ce­dars, Ca­li­for­nia) and cul­tu­re ex­pe­ri­ments. In: Lec­tu­re No­tes in Earth Sci­en­ces 131, pp. 101-121 (2011).  ResearchGate  Full Text
Meister, P., C. Reyes, W. Beaumont, M. Rincon, L. Colooins, W.M. Berelson, L. Stott, F. Corsetti and K.H. Nealson: Cal­ci­um and ma­gne­si­um-li­mi­ted do­lo­mi­te pre­ci­pi­ta­ti­on at Deep Springs Lake, Ca­li­for­nia. In: Se­di­men­to­lo­gy 58, pp. 1810–1830 (2011). doi:10.1111/​j.1365-3091.2011.01240.x.  Wiley
Oduro, H., J. Kamyshny, W. Guo and J. Farquhar: Mul­ti­ple sul­fur iso­to­pe ana­ly­sis of vo­la­ti­le or­ga­nic sul­fur com­pounds and their sul­fo­ni­um pre­cur­sors in co­as­tal ma­ri­ne en­vi­ron­ments. In: Ma­ri­ne Che­mis­try 124, pp. 78-89 (2011). doi:10.1016/​j.mar­chem.2010.12.004. ScienceDirect
Picard, A., I. Daniel, D. Testemale, I. Kieffer, P. Bleuet, H. Cardon and P.M. Oger: Mo­ni­to­ring mi­cro­bi­al re­dox trans­for­ma­ti­ons of me­tal and me­tal­lo­id ele­ments un­der high pres­su­re using in situ X-ray ab­sorp­ti­on spec­tro­sco­py. In: Geo­bio­lo­gy 9, pp. 196-204 (2011). doi:10.1111/​j.1472-4669.2010.00270.x.  PubMed
Ploug, H., B. Adam, N. Musat, T. Kalvelage, G. Lavik, D. Wolf-Gladrow and M.M.M. Kuypers: Car­bon, ni­tro­gen and O(2) flu­xes as­so­cia­ted with the cya­no­bac­te­ri­um No­du­la­ria spu­mi­gena in the Bal­tic Sea. In: The ISME Jour­nal 5, pp. 1549-1558 (2011) doi:10.1038/​is­mej.2011.20.  PubMed  Full Text
Van Rooij, D. et al. : Cold-wa­ter co­ral mounds on the Pen Duick Es­carpment, Gulf of Ca­diz: The MI­CRO­SYS­TEMS pro­ject ap­proach. In: Ma­ri­ne Geo­lo­gy 282, pp. 102-117 (2011). doi:10.1016/​j.mar­geo.2010.08.012.  ScienceDirect
Templer, S.P., L.M. Wehrmann, Y. Zhang, C. Vasconcelos and J.A. McKenzie: Mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on and bio­geo­che­mi­cal pro­ces­ses in cold-wa­ter co­ral car­bo­na­te mounds in the Gulf of Ca­diz, on the Mo­roc­can mar­gin. In: Ma­ri­ne Geo­lo­gy 282, pp. 138-148 (2011). doi:10.1016/​j.mar­geo.2010.10.020.  ScienceDirect
Webster, G., H. Sass, B.A. Cragg, R. Gorra, N.J. Knab, C.J. Green, F. Mathes, J.C. Fry, A.J. Weightman and R.J. Parkes: En­rich­ment and cul­ti­va­ti­on of pro­ka­ryo­tes as­so­cia­ted with the sulp­ha­te-me­tha­ne tran­si­ti­on zone of dif­fu­si­on-con­trol­led se­di­ments of Aar­hus Bay, Den­mark, un­der he­te­ro­tro­phic con­di­ti­ons. In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 77, pp. 248-263 (2011). doi:10.1111/​j.1574-6941.2011.01109.x.  PubMed
Wehrmann, L.M. et al. : Cou­p­led or­ga­nic and in­or­ga­nic car­bon cy­cling in the deep sub­seaf­loor se­di­ment of the nor­theas­tern Be­ring Sea Slo­pe (IODP Exp. 323). In: Che­mi­cal Geo­lo­gy 284, pp. 251-261 (2011). doi:10.1016/​j.chem­geo.2011.03.002.  ScienceDirect
Wehrmann, L.M., S.P. Templer, B. Brunner, S.M. Bernasconi, L. Maignien and T.G. Ferdelman: The im­print of me­tha­ne see­page on the geo­che­mi­cal re­cord and ear­ly dia­ge­ne­tic pro­ces­ses in cold-wa­ter co­ral mounds on Pen Duick Es­carpment, Gulf of Ca­diz. In: Ma­ri­ne Geo­lo­gy 282, pp. 118-137 (2011). doi:10.1016/​j.mar­geo.2010.08.005.  ScienceDirect
M.Sc Theses
Hach, Philipp: Dis­sol­ved or­ga­nic mat­ter re­mi­ner­liza­t­i­on in the sub­tro­pi­cal North At­lan­tic oxy­gen mi­ni­mum zone. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Matantseva, Olga: Ni­tro­gen and Oxy­gen iso­to­pe ef­fects du­ring the anam­m­ox pro­cess. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Robertson, Elizabeth: Ni­tro­gen cy­cling, re­mi­ne­ra­li­sa­ti­on and the in­flu­en­ces of man­ga­ne­se in arc­tic fjord se­di­ments. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Sztejrenszus, Saar: Na­no­SIMS ima­ging of car­bon and ni­tro­gen as­si­mi­la­ti­on by unicel­lu­lar cya­no­bac­te­ria in the sub­tro­pi­cal Nort­hern Pa­ci­fic Oce­an. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Ph.D. theses
Gao, Hang: Ni­tro­gen loss in the in­terti­dal per­me­able Wad­den Sea se­di­ments. Ph.D. the­sis, (2011).
Sawicka, Joanna: Arc­tic to tro­pic - ad­ap­ta­ti­on and re­s­pon­se of an­ae­ro­bic mi­cro­or­ga­nisms to tem­pe­ra­tu­re ef­fects in ma­ri­ne se­di­ments. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).

Mi­cro­sen­sor Group

Abed, R.M.M., S. Al Kindi, A. Schramm and M.J. Barry: Short-term ef­fects of floo­ding on bac­te­ri­al com­mu­ni­ty struc­tu­re and ni­tro­ge­na­se ac­tivi­ty in mi­cro­bi­al mats from a de­sert stream. In: Aqua­tic Mi­cro­bi­al Eco­lo­gy 63, pp. 245-254 (2011).  AME
Abed, R.M.M., S. Dobrestov, S. Al-Kharusi, A. Schramm, B. Jupp and S. Golubic: Cya­no­bac­te­ri­al di­ver­si­ty and bioac­tivi­ty of in­land hy­per­sa­li­ne mi­cro­bi­al mats from a de­sert stream in the Sul­ta­na­te of Oman. In: Fot­tea 11, pp. 215-224 (2011).  Full Text
Beck, A.J., F. Janssen and D. De Beer: The in­flu­ence of pho­to­tro­phic bent­hic bio­films on Cd, Cu, Ni, and Pb trans­port in per­me­able se­di­ments. In: Bio­geo­che­mis­try 102, pp. 167-181 (2011).  EBSCO
Beck, M.T.R., J. Graue, J. Koster, N. Kowalski, C.S. Wu, G. Wegener, Y. Lipsewers, H. Freund, M.E. Böttcher, H.J. Brumsack, H. Cypionka, J. Rullkotter and B. Engelen: Im­print of past and pre­sent en­vi­ron­men­tal con­di­ti­ons on mi­cro­bio­lo­gy and bio­geo­che­mis­try of co­as­tal Qua­tern­ary se­di­ments. In: Bio­geo­sci­en­ces 8(1), pp. 55-68 (2011).  Biogeosciences  Full Text
de Beer, D.: Mi­cro­sen­sors for Se­di­ments, Mi­cro­bi­al Mats, and Bio­films in En­cy­clo­pe­dia of Earth Sci­en­ces Se­ries. In: En­cy­clo­pe­dia of Geo­bio­lo­gy Part 12, pp. 658-662 (2011). DOI: 10.1007/​978-1-4020-9212-1_149  Springer
Fabricius, K.E., C. Langdon, S. Uthicke, C. Humphrey, S. Noonan, G. De'ath, R. Okazaki, N. Muehllehner, M.S. Glas and J.M. Lough: Lo­sers and win­ners in co­ral reefs ac­cli­ma­ti­zed to ele­va­ted car­bon di­oxi­de con­cen­tra­ti­ons. In: Na­tu­re Cli­ma­te Chan­ge 1(3), pp. 165-169 (2011).  Nature
Girnth, A.C., S. Grünke, A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhoefer, D. De Beer and A.  Boetius: A no­vel, mat-for­ming Thio­mar­ga­ri­ta po­pu­la­ti­on as­so­cia­ted with a sul­fi­dic flow from a deep-sea mud vol­ca­no. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13(2), pp. 495-505 (2011).  PubMed
Hamza, W., M.R. Enan, H. Al-Hassini, J.B. Stuut and D. de Beer: Dust storms over the Ara­bi­an Gulf: a pos­si­ble in­di­ca­tor of cli­ma­te chan­ges con­se­quen­ces. In: Aqua­tic Eco­sys­tem Health & Ma­nage­ment 14(3), pp. 260–268 (2011).  Full Text
Kamp, A., D. de Beer, J.L. Nitsch, G. Lavik and P. Stief: Dia­toms re­spi­re ni­tra­te to sur­vi­ve dark and an­oxic con­di­ti­ons. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the USA 108(14), pp. 5649-5654 (2011).  PubMed  Full Text
Matsui, G.Y., N. Volkenborn, L. Polerecky, U. Henne, D.S. Wethey, C.R. Lovell and S.A. Woodin: Me­cha­ni­cal imi­ta­ti­on of bi­di­rec­tio­nal bioad­vec­tion in aqua­tic se­di­ments. In: Lim­no­lo­gy and Ocea­no­gra­phy 9, pp. 84-96 (2011).  DLR
Salman, V., R. Amann, A.C. Girnth, L. Polerecky, J.V. Bailey, S. Hogslund, G. Jessen, S. Pantoja and H.N. Schulz-Vogt: A sin­gle-cell se­quen­cing ap­proach to the clas­si­fi­ca­ti­on of lar­ge, va­cuo­la­ted sul­fur bac­te­ria. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34(4), pp. 243-259 (2011).  PubMed
Ph.D. theses
Dannenmann, A.: Ana­ly­sis of ni­tra­te re­spi­ra­ti­on in Thio­mar­ga­ri­ta na­mi­bi­en­sis. Di­plo­ma the­sis, Hoch­schu­le-Ost­west­fa­len, Lip­pe (2011).
Stengler, U.: In­ves­ti­ga­ti­on of the in­flu­ence of ma­gne­si­um ion con­cen­tra­ti­ons on the va­cuo­lar ni­tra­te uptake in the hy­per­sa­li­ne sulphur bac­te­ri­um Beggia­tioa sp.. Di­plo­ma the­sis, Ernst-Abbe-Hoch­schu­le, Jena (2011).

De­part­ment of Mi­cro­bio­lo­gy

Basen, M., M. Krüger, J. Milucka, J. Kuever, J. Kahnt, O. Grundmann, A. Meyerdierks, F. Widdel and S. Seigo Shima: Bac­te­ri­al en­zy­mes for dis­si­mi­la­to­ry sul­fa­te re­duc­tion in a ma­ri­ne mi­cro­bi­al mat (Black Sea) me­dia­ting an­ae­ro­bic oxi­da­ti­on of me­tha­ne. In: En­vi­ro­men­tal Mi­cro­bio­lo­gy 5, pp. 1370-1379 (2011).  PubMed
Frank, C.S., P. Langhammer, B.M. Fuchs and J. Harder: Am­mo­nia and at­tach­ment of Rho­do­pi­rel­lu­la bal­ti­ca. In: Ar­chi­ves of Mi­cro­bio­lo­gy 193, pp. 365-372 (2011).
Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.U. Hinrichs, A. Teske, A. Boetius and G. Wegener: Ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne mi­cro­bi­al con­sor­tia. In: ISME Jour­nal 5, pp. 1946–1956 (2011).  PubMed  Full Text
Holler, T., G. Wegener, H. Niemann, C. Deusner, T.G. Ferdelman, A. Boetius, B. Brunner and F. Widdel: Car­bon and sul­fur back flux du­ring an­ae­ro­bic mi­cro­bi­al oxi­da­ti­on of me­tha­ne and cou­p­led sul­fa­te re­duc­tion. In: PNAS 108, pp. E-1484-E1490 (2011).  PubMed  Full Text
Lüddeke, F. and J. Harder: En­an­tio­s­pe­ci­fic (S)-(+)-li­n­a­lool for­ma­ti­on from β-myr­ce­ne by li­n­a­lool de­hy­dra­ta­se-iso­me­ra­se. In: A Jour­nal of Bio­sci­en­ces - Zeit­schrift für Na­tur­for­schung 66C, pp. 409-412 (2011).  PubMed  Full Text
Rabus, R., R. Jarling, S. Lahme, S. Kühner, J. Heider, F. Widdel and H. Wilkes: Co-me­ta­bo­lic con­ver­si­on of to­lue­ne in an­ae­ro­bic n-al­ka­ne-de­gra­ding bac­te­ria. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 2576-2586 (2011).  PubMed
Steinbach, A.K., S. Fraas, J. Harder, A. Tabbert, H. Brinkmann, A. Meyer, U. Ermler and P.M.H. Kroneck: Cy­clo­he­xa­ne-1,2-dio­ne hy­dro­la­se from de­ni­tri­fy­ing Azo­ar­cus sp. strain 22­Lin, a no­vel mem­ber of the thia­mi­ne di­phos­pha­te en­zy­me fa­mi­ly. In: Jour­nal Bac­te­rio­lo­gy 193, pp. 6760-6769 (2011).  PubMed  Full Text
Zech, H., C. Echtermeyer, L. Wöhlbrand, B. Blasius and R. Rabus: Bio­lo­gi­cal ver­sus tech­ni­cal va­ria­bi­li­ty in 2D DIGE ex­pe­ri­ments with en­vi­ron­men­tal bac­te­ria. In: Pro­teo­mics 11, pp. 3380-3389 (2011).  PubMed
B.Sc theses
Büttner, Edgar: Cha­rak­te­ri­sie­rung der Phos­phat­li­mi­ta­ti­on bei Rho­do­pi­rel­lu­la bal­ti­ca SH1T. Ba­che­lor the­sis, FH Lau­sitz, Bran­den­burg (2011).
Rahnfeld, Tobias: Cha­rac­te­ri­sa­ti­on of a ge­ra­ni­ol de­hy­dro­ge­na­se. Ba­che­lor the­sis, FH Lau­sitz, Bran­den­burg (2011).
M.Sc theses
Biswas, Bhabananda: Mi­cro­di­ver­si­ty of Rho­do­pi­rel­lu­la ge­nes in co­as­tal se­di­ments. Mas­ter the­sis, Uni­ver­si­ty of Gent, Nether­lands (2011).
Büsing, Imke: Mole­cu­lar ge­ne­tic ex­ami­na­ti­on of the an­ae­ro­bic de­gra­da­ti­on of p-ethyl­phe­nol in 'A­ro­ma­to­le­um aro­ma­ti­cum' EbN1. Mas­ter the­sis, Uni­ver­si­ty of Ol­den­burg, Nie­der­sach­sen (2011).
Dörries, Marvin: Ma­nu­al an­no­ta­ti­on of the ge­no­me of Des­ul­fo­coc­cus mul­tiv­or­ans.  Mas­ter the­sis, Uni­ver­si­ty of Ol­den­burg, Nie­der­sach­sen (2011).
Renuka Murthy, Samudrahalli Govinde Gowda : Di­ver­si­ty of Rho­do­pi­rel­lu­la ge­nes in co­as­tal se­di­ments. Mas­ter the­sis, Uni­ver­si­ty of Gent, Nether­lands (2011).
McLaren, Megan: De­gra­da­ti­on of chlo­ro­phyll by ma­ri­ne mi­cro­or­ga­nisms. Mas­ter the­sis, Uni­ver­si­ty of Bre­men In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Paknikar, Aishwarya: An­ae­ro­bic de­gra­da­ti­on of cy­clic al­ka­nes by ni­tra­te-re­du­cing en­rich­ment cul­tu­res. Mas­ter the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2011)
Ph.D. theses
Dona, Clelia: Mo­bi­liza­t­i­on of sul­fur by green sul­fur bac­te­ria – Phy­sio­lo­gi­cal and mole­cu­lar stu­dies on Chlorobaculum parvum DSM 263. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Frank, Carsten S.: Po­ly­pha­si­sche Ta­xo­no­mie, Kern­ge­nom und Le­bens­zy­klus von Rho­do­pi­re­lul­la-Stäm­men. Ph.D. the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2011)
Jaekel, Ulrike: An­ae­ro­bic oxi­da­ti­on of short-chain and cy­clic al­ka­nes by sul­fa­te-re­du­cing bac­te­ria. Ph.D. the­sis, Uni­ver­si­ty of Bre­men/ In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Lüddeke, Frauke: Ge­ne­ti­sche und bio­che­mi­sche Cha­rak­te­ri­sie­rung von En­zy­men des an­ae­ro­ben Mo­no­ter­pen-Ab­baus in Ca­s­tel­la­ni­el­la de­fra­grans. Ph.D. the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2011).
Milučá, Jana: Dis­si­mi­la­to­ry sul­fur me­ta­bo­lism (Cel­lu­lar in­ves­ti­ga­ti­on) cou­p­led to an­ae­ro­bic oxi­da­ti­on of me­tha­ne. Ph.D. the­sis, Uni­ver­si­ty of Bre­men/ In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Rau, Jan Erik: Cha­rac­te­ri­sa­ti­on of in­hi­bi­to­ry sub­stan­ces pro­du­ced by two Pseu­do­al­te­ro­mo­nas spe­cies and the cya­no­bac­te­ri­al strain Flo 1. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).

Eco­phy­sio­lo­gy Group

Bailey, J.V., V. Salman, G.W. Rouse, H.N. Schulz-Vogt, L.A. Levin and V.J. Orphan:Di­mor­phism in me­tha­ne seep-dwel­ling eco­ty­pes of the lar­gest known bac­te­ria. In: The ISME Jour­nal 5, pp. 1926-1935 (2011).  PubMed  Full Text
Brock, J. and H.N. Schulz-Vogt: Sul­fi­de in­du­ces phos­pha­te re­lease from po­ly­phos­pha­te in cul­tu­res of a ma­ri­ne Beggia­toa strain. In: The ISME Jour­nal 5, pp. 497-506 (2011).  PubMed  Full Text
Girnth, A.-C., S. Grünke, A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer,  and A. Boetius: A no­vel, mat-for­ming Thio­mar­ga­ri­ta po­pu­la­ti­on as­so­cia­ted with sul­fi­dic flu­id from a deep-sea mud vol­ca­no. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 495-505 (2011).  PubMed
Grünke, S., J. Felden, A. Lichtschlag, A.C. Girnth, D. de Beer, F. Wenzhöfer and A. Boetius: Ni­che dif­fe­ren­tia­ti­on among mat-for­ming, sul­fi­de-oxi­di­zing bac­te­ria at cold seeps of the Nile Deep Sea Fan (Eas­tern Me­di­ter­ra­ne­an Sea). In: Geo­bio­lo­gy 9, pp. 330-348 (2011).  PubMed
Hinck, S., M. Mussmann, V. Salman, T.R. Neu, S. Lenk, D. de Beer and H.M. Jonkers: Va­cuo­la­ted Beggia­toa-like fil­aments from dif­fe­rent hy­per­sa­li­ne en­vi­ron­ments form a no­val ge­nus. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 3194-3205 (2011).  PubMed
Salman, V., R. Amann, A.C. Girnth, L. Polerecky, J.V. Bailey, S. Høgslund, G. Jessen, S. Pantoja and H.N. Schulz-Vogt: A sin­gle-cell se­quen­cing ap­proach to the clas­si­fi­ca­ti­on of lar­ge, va­cuo­la­ted sul­fur bac­te­ria. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 243-259 (2011).  PubMed
Ph.D. theses
Brock, Jörg: Im­pact of sul­fi­de-oxi­di­zing bac­te­ria on the phos­pho­rus cy­cle in ma­ri­ne se­di­ments. Ph.D. the­sis, (2011).
Salman, Verena: Di­ver­si­ty stu­dies and mole­cu­lar ana­ly­ses with sin­gle cells and fil­aments of lar­ge, co­lor­less sul­fur bac­te­ria. Ph.D. the­sis, (2011).
Schwedt, Anne: Phy­sio­lo­gy of a ma­ri­ne Beggia­toa strain and the ac­com­pany­ing or­ga­nism Pseu­do­vi­brio sp. – a fa­cul­ta­tive­ly oli­go­tro­phic bac­te­ri­um. Ph.D. the­sis, (2011).

Mole­cu­lar Eco­lo­gy Group

Abed, R.M.M., N. Musat, F. Musat and M. Mußmann: Struc­tu­re of mi­cro­bi­al com­mu­nities and hy­dro­c­ar­bon-de­pen­dent sul­fa­te re­duc­tion in the an­oxic lay­er of a pol­lu­ted mi­cro­bi­al mat. In: Ma­ri­ne Pol­lu­ti­on Bul­le­tin 62, pp. 539-546 (2011).  PubMed
Basen, M., M. Krüger, J. Milucka, J. Kuever, J. Kahnt, O. Grundmann, A. Meyerdierks, F. Widdel and S. Shima: Bac­te­ri­al en­zy­mes for dis­si­mi­la­to­ry sul­fa­te re­duc­tion in a ma­ri­ne mi­cro­bi­al mat (Black Sea) me­dia­ting an­ae­ro­bic oxi­da­ti­on of me­tha­ne. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 1370-1379 (2011).  PubMed
Brinkhoff, T., D. Fischer, J. Vollmers, S. Voget, C. Beardsley, S. Thole, M. Mußmann et al.: Bio­geo­gra­phy and phy­lo­ge­ne­tic di­ver­si­ty of a clus­ter of ex­clu­si­ve­ly ma­ri­ne myxo­bac­te­ria. In: ISME Jour­nal, (2011). doi:10.1038/​is­mej.2011.190  PubMed  >Full Text
Hinck, S., M. Mußmann, V. Salman, T.R. Neu, S. Lenk, D. de Beer and H.M. Jonkers: Va­cuo­la­ted Beggia­toa-like fil­aments from dif­fe­rent hy­per­sa­li­ne en­vi­ron­ments form a no­vel ge­nus. En­vi­ron­men­tal Mi­cro­bio­lo­gy, (2011). DOI: 10.1111/​j.1462-2920.2011.02513.x  PubMed
Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.U. Hinrichs, A. Teske, A. Boetius and G. Wegener: Ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne mi­cro­bi­al con­sor­tia. In: ISME Jour­nal 5, pp. 1946-1956 (2011).  PubMed  Full Text
Jogler, C., G. Wanner, S. Kolinko, M. Niebler, R. Amann, N. Petersen, M. Kube, R. Reinhard and D. Schüler: Con­ser­va­ti­on of pro­te­ob­ac­te­ri­al ma­gne­to­so­me ge­nes and struc­tu­res in an un­cul­ti­va­ted mem­ber of the deep-bran­ching Ni­tro­s­pi­ra phyl­um. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the USA 108, pp. 1134-1139 (2011).  PubMed  Full Text
Knittel, K. and A. Boetius: An­ae­ro­bic oxi­da­ti­on of me­tha­ne with sul­fa­te. In: En­cy­clo­pe­dia of Geo­bio­lo­gy, Reit­ner, J., and Thiel, V. (eds), Ber­lin Hei­del­berg New York: Sprin­ger Sci­ence+Busi­ness Me­dia B.V., pp. 36-47 (2011).
Kubo, K., K. Knittel, R. Amann, M. Fukui and K. Matsuura: Sul­fur-me­ta­bo­li­zing bac­te­ri­al po­pu­la­ti­ons in mi­cro­bi­al mats of the Naka­bu­sa hot spring, Ja­pan. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 293-302 (2011).  PubMed
Moraru, C., G. Moraru, B. Fuchs and R. Amann: Con­cepts and soft­ware for a ra­tio­nal de­sign of po­ly­nu­cleo­ti­de pro­bes. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 3, pp. 69-78 (2011).  PubMed
Munoz, R., P. Yarza, W. Ludwig, J. Euzeby, R. Amann, K.H. Schleifer, F.O. Glöckner and R. Rossello-Mora: Re­lease LT­Ps104 of the All-Spe­cies Li­ving Tree. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 169-170 (2011).  PubMed
Mußmann, M., I. Brito, A. Pitcher, J.S.S. Damste, R. Hatzenpichler, A. Richter, J.L. Nielsen, P.H. Nielsen, A. Muller, H. Daims, M. Wagner and I.M. Head: Thau­m­ar­chaeo­tes ab­un­dant in re­fi­ne­ry ni­tri­fy­ing slud­ges ex­press amoA but are not ob­li­ga­te au­to­tro­phic am­mo­nia oxi­di­zers. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the USA 108, pp. 16771-16776 (2011).  PubMed  Full Text
Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, I. Meseguer, M. Lucio, P. Schmitt-Kopplin, J. Dopazo, R. Rossello-Mora, M. Schüler, F.O. Glöckner, R. Amann, T. Gabaldon and J. Anton: From ge­no­mics to mi­cro­evo­lu­ti­on and eco­lo­gy: the case of Sa­li­ni­bac­ter ru­ber. In: Ha­lo­phi­les and Hy­per­sa­li­ne En­vi­ron­ments, pp. 109-122 (2011).  Springer
Petersen, J.M., F.U. Zielinski, T. Pape, R. Seifert, C. Moraru, R. Amann, S. Hourdez, P.R. Girguis, S.D. Wankel, V. Barbe, E. Pelletier, D. Fink, C. Borowski, W. Bach and N. Dubilier: Hy­dro­gen is an en­er­gy sour­ce for hydro­ther­mal vent sym­bio­ses. In: Na­tu­re 476, pp. 176-180 (2011).  PubMed
Pizzetti, I., A. Gobet, B.M. Fuchs, R. Amann and S. Fazi: Ab­un­dance and di­ver­si­ty of Planc­to­my­ce­tes in a Thyr­rhe­ni­an co­as­tal sys­tem of cen­tral Ita­ly (La­ti­um). In: Aqua­tic Mi­cro­bi­al Eco­lo­gy 65, pp. 129-141 (2011).  AME
Pizzetti, I., B.M. Fuchs, G. Gerdts, A. Wichels, K.H. Wiltshire and R. Amann: Tem­po­ral  va­ria­bi­li­ty of co­as­tal Planc­to­my­ce­tes cla­des at Ka­bel­ton­ne Sta­ti­on, North Sea. In: Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 77, pp. 5009-5017 (2011).  PubMed  Full Text
Salman, V., R. Amann, A.C. Girnth, L. Polerecky, J.V. Bailey, S. Høgslund, G. Jessen, S. Pantoja and H. N. Schulz-Vogt: A sin­gle-cell se­quen­cing ap­proach to the clas­si­fi­ca­ti­on of lar­ge va­cuo­la­ted sulphur bac­te­ria. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 243-259 (2011).  PubMed
Schauer, R., H. Roy, N. Augustin, H.H. Gennerich, M. Peters, F. Wenzhoefer, R. Amann, and A. Meyerdierks: Bac­te­ri­al sul­fur cy­cling shapes mi­cro­bi­al com­mu­nities in sur­face se­di­ments of an ul­tra­ma­fic hydro­ther­mal vent field. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 2633-2648 (2011).  PubMed
Schubert, C.J., F. Vazquez, T. Lösekann-Behrens, K. Knittel, M. Tonolla and A. Boetius: Evi­dence for an­ae­ro­bic oxi­da­ti­on of me­tha­ne in se­di­ments of a freshwa­ter sys­tem (Lago di Ca­da­g­no). In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 76, pp. 26-38 (2011).  PubMed
Serrano, W., R. Amann, R. Rossello-Mora, R.A. Herbert and U. Fischer: The ge­nus Al­loch­ro­ma­ti­um (Chro­ma­tia­les Chro­ma­ti­aceae) re­vi­si­ted: a stu­dy on its in­tra­ge­nic struc­tu­re ba­sed on mul­ti­lo­cus se­quence ana­ly­sis (MLSA) and DNA-DNA hy­bri­di­za­t­i­on (DDH). In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 590-594 (2011).  PubMed
Suarez-Suarez, A., A. Lopez-Lopez, A. Tovar-Sanchez, P. Yarza, A. Orfila, J. Terrados, J. Arnds, S. Marques, H. Niemann, P. Schmitt-Kopplin, R. Amann and R. Rossello-Mora: Re­s­pon­se of sul­fa­te-re­du­cing bac­te­ria to an ar­ti­fi­ci­al oil-spill in a co­as­tal ma­ri­ne se­di­ment. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 1488-1499 (2011).  PubMed
Thiele, S., B.M. Fuchs and R.I. Amann: Iden­ti­fi­ca­ti­on of mi­cro­or­ga­nisms using the ri­bo­so­mal RNA ap­proach and fluo­re­scence in situ hy­bri­di­za­t­i­on. In: Trea­ti­se on Wa­ter Sci­ence Vol.  3, pp. 171-189 (2011).  ResearchGate  Full Text
Weber, M., H. Teeling, S. Huang, J. Waldmann, M. Kassabgy, B.M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts, R. Amann, and F.O. Glöckner: Prac­tical ap­p­li­ca­ti­on of self-or­ga­ni­zing maps to in­ter­re­la­te bio­di­ver­si­ty and func­tio­nal data in NGS-ba­sed me­ta­ge­no­mics. In: ISME Jour­nal 5, pp. 918-928 (2011).  PubMed  Full Text
Zeder, M., A. Ellrott and R. Amann: Au­to­ma­ted samp­le area de­fi­ni­ti­on for high-through­put mi­cro­sco­py. In: Cy­to­metry Part A 79A, pp. 306-310 (2011).  PubMed  Full Text
M.Sc and B.Sc theses
Bodden, Stephanie: Ent­wick­lung von FISH-Oli­go­nu­kleo­tid­son­den zur Quan­ti­fi­zie­rung der BuS5/​Bu­ta­ne-GMe12. Ba­che­lor the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2011).
Pjevac, Petra: Me­ta­bo­lism of ele­men­tal sul­fur and py­ri­te in in­terti­dal se­di­ments. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Ph.D. theses
Kassabgy, Mariette: Di­ver­si­ty and ab­un­dance of Gam­ma­pro­te­ob­ac­te­ria du­ring the win­ter-spring tran­si­ti­on at sta­ti­on Ka­bel­ton­ne (Hel­go­land). Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy / Uni­ver­si­ty of Bre­men, Bre­men (2011).
Kubo, Kyoko: Au­te­co­lo­gy of cren­ar­chaeo­tal and bac­te­ri­al cla­des­in ma­ri­ne se­di­ments and mi­cro­bi­al mats. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy / Uni­ver­si­ty of Bre­men, Bre­men (2011).
Lenk, Sabine: Mole­cu­lar eco­lo­gy of key or­ga­nisms in sul­fur and car­bon cy­cling in ma­ri­ne se­di­ments. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy / Uni­ver­si­ty of Bre­men, Bre­men (2011).

Sym­bio­sis Group

Gruber-Vodicka, H.R., U. Dirks, N. Leisch, C. Baranyi, K. Stoecker, S. Bulgheresi, N.R.  Heindl,  M. Horn, C. Lott, A. Loy, M. Wagner and J. Ott: Paracatenula, an an­ci­ent sym­bio­sis bet­ween thio­tro­phic Al­pha­pro­te­ob­ac­te­ria and ca­ten­u­lid flat­worms. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the U.S.A. 108, pp. 12078-12083 (2011).  PubMed  Full Text
Hugler, M., J.M. Petersen, N. Dubilier, J.F. Imhoff and S.M. Sievert: Pa­thways of car­bon and en­er­gy me­ta­bo­lism of the epi­bio­tic com­mu­ni­ty as­so­cia­ted with the deep-sea hydro­ther­mal vent shrimp Rimicaris exoculata. In: PLoS One 6, (2011). doi:e1601810.1371/​jour­nal.pone.0016018  PubMed   Full Text
Kleiner, M., T. Woyke, C. Ruehland and N. Dubilier: The Olavius algarvensis me­ta­ge­no­me re­vi­si­ted: les­sons lear­ned from the ana­ly­sis of the low di­ver­si­ty mi­cro­bi­al con­sor­ti­um of a gut­less ma­ri­ne worm. In: Hand­book of Mole­cu­lar Mi­cro­bi­al Eco­lo­gy II; Me­ta­ge­no­mics in Dif­fe­rent Ha­bi­tats, pp. 321-334  (2011).  Wiley
Petersen, J.M., F.U. Zielinski, T. Pape, R. Seifert, C. Moraru, R. Amann, S. Hourdez, P.R. Girguis, S.D. Wankel, V. Barbe, E. Pelletier, D. Fink, C. Borowski, W. Bach and N. Dubilier: Hy­dro­gen is an en­er­gy sour­ce for hydro­ther­mal vent sym­bio­ses. In: Na­tu­re 476, pp. 176-180 (2011). doi:10.1038/​na­tu­re10325.  PubMed
Zielinski, F.U., H. Gennerich, C. Borowski, F. Wenzhöfer and N. Dubilier: In situ mea­su­re­ments of hy­dro­gen sul­fi­de, oxy­gen, and tem­pe­ra­tu­re in dif­fu­se fluids of an ul­tra­ma­fic-hosted hydro­ther­mal vent field (Lo­gat­chev, 14°45N, Mid-At­lan­tic Ridge): Im­pli­ca­ti­ons for che­mo­sym­bio­tic ba­thy­mo­dio­lin mus­sels. In: Geo­che­mis­try, Geo­phy­sics, Geo­sys­tems 12, Q0A­E04 (2011). doi:10.1029/​2011G­C003632.  Wiley  Full Text
M.Sc theses
Wippler, Juliane: Ana­ly­sis of mo­bi­le DNA in en­do­sym­bi­onts of the gut­less ma­ri­ne oli­gochae­te worm Ola­vi­us al­gar­ven­sis. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy/ Uni­ver­si­ty of Bre­men, Bre­men (2011).
Ph.D. theses
Fink, Dennis: Dy­na­mics of sym­bi­ont ab­un­dance in ba­thy­mo­dio­lin deep-sea sym­bio­ses. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy / Uni­ver­si­ty of Bre­men, Bre­men (2011).

Mi­cro­bi­al Ge­no­mics Group

Duhaime, M.B., R. Kottmann, D. Field and F.O. Glöckner: En­riching pu­blic de­scrip­ti­ons of ma­ri­ne pha­ges using the Ge­no­mic Stan­dards Con­sor­ti­um MIGS stan­dard. In: SIGS 4, pp. 271-285 (2011).  PubMed  Full Text
Field, D., L. Amaral-Zettler, G. Cochrane, J.R. Cole, P. Dawyndt, G.M. Garrity, J. Gilbert, F.O. Glöckner, L. Hirschman, I. Karsch-Mizrachi et al.: The Ge­no­mic Stan­dards Con­sor­ti­um. In: PLoS Bio­lo­gy 9, e1001088 (2011).  PubMed  Full Text
Glöckner, F.O. and R. Kottmann: MIxS: neue Stan­dards für Se­quenz- und Um­welt­da­ten. In: BIO­spek­trum 17, pp. 710-711 (2011).  Springer
Glöckner, F.O.: Glo­ba­le Volks­zäh­lung. In: La­bor­jour­nal 6 pp. 46-48 (2011).  Full Text
Hankeln, W., N.J. Wendel, J. Gerken, J. Waldmann, P.L. Buttigieg, I. Kostadinov, R. Kottmann, P. Yilmaz and F.O. Glöckner: CD­in­Fu­si­on - Sub­mis­si­on-Re­a­dy, On-Line In­te­gra­ti­on of Se­quence and Con­textu­al Data. In: Plos One 6, (2011)  PubMed  Full Text
Jogler, C., F.O. Glöckner and R. Kolter: Cha­rac­te­riza­t­i­on of Planc­to­my­ces lim­no­phi­lus and de­ve­lop­ment of ge­ne­tic tools for Its ma­ni­pu­la­ti­on. Es­ta­blish It as a mo­del spe­cies for the phyl­um Planc­to­my­ce­tes. In: Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 77, pp. 5826-5829 (2011).  PubMed  Full Text
Kostadinov, I., R. Kottmann, A. Ramette, J. Waldmann, P.L. Buttigieg and F. Glöckner: Quan­ti­fy­ing the ef­fect of en­vi­ron­ment sta­bi­li­ty on the tran­scrip­ti­on fac­tor re­per­toire of ma­ri­ne mi­cro­bes. In: Mi­cro­bi­al In­for­ma­tics and Ex­pe­ri­men­ta­ti­on 1, p. 9 (2011).  PubMed  Full Text
Ludwig, W., P. Yilmaz and F.O. Glöckner: The use of rRNA gene se­quence data in the clas­si­fi­ca­ti­on and iden­ti­fi­ca­ti­on of pro­ka­ryo­tes. In: Me­thods in Mi­cro­bio­lo­gy, vol. 38, (2011).
Morrison, N., D. Hancock, L. Hirschman, P. Dawyndt, B. Verslyppe, N. Kyrpides, R. Kottmann, P. Yilmaz, F.O. Glöckner, J. Grethe et al.: Data shop­ping in an open mar­ket­place: In­tro­du­cing the On­to­gra­tor web ap­p­li­ca­ti­on for mar­king up data using on­to­lo­gies and brow­sing using fa­cets. In: SIGS 4, pp. 286-292 (2011).  PubMed  Full Text
Munoz, R., P. Yarza, W. Ludwig, J. Euzeby, R. Amann, K.H. Schleifer, F.O. Glöckner and R. Rossello-Mora: Re­lease LT­Ps104 of the All-Spe­cies Li­ving Tree. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 169-170 (2011).  PubMed
Pruesse, E., C. Quast, P. Yilmaz, W. Ludwig, J. Peplies and F.O. Glöckner: SIL­VA: com­pre­hen­si­ve da­ta­ba­ses for qua­li­ty che­cked and ali­gned ri­bo­so­mal RNA se­quence data com­pa­ti­ble with ARB. In: Hand­book of Mole­cu­lar Mi­cro­bi­al Eco­lo­gy I: Me­ta­ge­no­mics and Com­ple­men­ta­ry Ap­proa­ches, pp. 393-398 (2011).  PubMed  Full Text
Schattenhofer, M., J. Wulf, I. Kostadinov, F.O. Glöckner, M.V. Zubkov and B.M. Fuchs: Phy­lo­ge­ne­tic cha­rac­te­ri­sa­ti­on of pi­co­plank­to­nic po­pu­la­ti­ons with high and low nu­cleic acid con­tent in the North At­lan­tic Oce­an. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 470-475 (2011).  PubMed
Westram, R., K. Bader, E. Pruesse, Y. Kumar, H. Meier, F.O. Glöckner and W. Ludwig: ARB: a soft­ware en­vi­ron­ment for se­quence data. In: Hand­book of Mole­cu­lar Mi­cro­bi­al Eco­lo­gy I: Me­ta­ge­no­mics and Com­ple­men­ta­ry Ap­proa­ches, pp. 399-406 (2011).  PubMed  Full Text
Weber, M., H. Teeling, S.X. Huang, J. Waldmann, M. Kassabgy, B.M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts et al.: Prac­tical ap­p­li­ca­ti­on of self-or­ga­ni­zing maps to in­ter­re­la­te bio­di­ver­si­ty and func­tio­nal data in NGS-ba­sed me­ta­ge­no­mics. In: ISME Jour­nal 5, pp. 918-928 (2011).  PubMed  Full Text
Yilmaz, P., R. Kottmann, E. Pruesse, C. Quast and F.O. Glöckner: Ana­ly­sis of 23S rRNA ge­nes in me­ta­ge­no­mes - a case stu­dy from the Glo­bal Oce­an Sam­pling Ex­pe­di­ti­on. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34, pp. 462-469 (2011).  PubMed
Yilmaz, P., R. Kottmann, D. Field, R. Knight, J.R. Cole, L. Amaral-Zettler, J.A. Gilbert, I. Karsch-Mizrachi, A. Johnston, G. Cochrane et al.: Mi­ni­mum in­for­ma­ti­on about a mar­ker gene se­quence (MI­MARKS) and mi­ni­mum in­for­ma­ti­on about any (x) se­quence (MIxS) spe­ci­fi­ca­ti­ons. In: Na­tu­re Bio­tech­no­lo­gy 29, pp. 415-420 (2011).  PubMed  Full Text
Yilmaz, P., J.A. Gilbert, R. Knight, L. Amaral-Zettler, I. Karsch-Mizrachi, G. Cochrane, Y. Nakamura, S.A. Sansone, F.O. Glöckner and D. Field: The ge­no­mic stan­dards con­sor­ti­um: brin­ging stan­dards to life for mi­cro­bi­al eco­lo­gy. In: ISME Jour­nal 5, pp. 1565–1567 (2011).  PubMed  Full Text
B.Sc theses
Wendel, Norma: CD­in­Fu­si­on - a pro­to­ty­pe for a sub­mis­si­on-pre­pa­ra­ti­on-tool to in­te­gra­te se­quen­ces and con­textu­al data. Ba­che­lor the­sis, (2011).
M.Sc theses
Beckers, Veronique: Me­ta­bo­lic Flux Ana­ly­sis for Rho­do­pi­rel­lu­la bal­ti­ca SH 1T. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Schnetzer, Julia: Ge­no­mic In­ves­ti­ga­ti­ons of Pseu­do­al­te­ro­mo­nas pha­ges. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Schweer, Timmy: Qua­li­täts­ma­nage­ment ri­bo­so­ma­ler RNA Se­quen­zen in der SIL­VA Da­ten­bank. Mas­ter the­sis, (2011).
Wegner, Carl-Eric: Ana­ly­sing gene ex­pres­si­on chan­ges in Rho­do­pi­rel­lu­la bal­ti­ca SH 1T upon uti­li­sing sulp­ha­ted po­ly­sac­cha­ri­des. Mas­ter the­sis, (2011).
Ph.D. theses
Hankeln, Wolfgang: Data in­te­gra­ti­on in mi­cro­bi­al ge­no­mics: con­textua­li­zing se­quence data in aid of bio­lo­gi­cal know­ledge. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Kostadinov, Ivaylo: Ma­ri­ne me­ta­ge­no­mics: from high-through­put data to eco­ge­no­mic in­ter­pre­ta­ti­on. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Öztürk, Basak: As­ses­sing the ge­ne­tic ac­ces­si­bi­li­ty of the ma­ri­ne bac­te­ri­um Rho­do­pi­rel­lu­la bal­ti­ca SH 1T. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Prüsse, Elmar: Scalable bio­in­for­ma­tic me­thods and re­sour­ces for ri­bo­so­mal RNA gene ba­sed stu­dies. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Yilmaz, Pelin: Im­pro­ving the usa­ge of ri­bo­so­mal RNA gene in mi­cro­bio­lo­gy and mi­cro­bi­al eco­lo­gy- Im­port­an­ce of stan­dar­di­za­t­i­on and bio­cu­ra­ti­on. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).

Ma­ri­ne Geo­che­mis­try Group

Rossel, P.E., M. Elvert, A. Ramette, A. Boetius and K.U. Hinrichs: Fac­tors con­trol­ling the dis­tri­bu­ti­on of an­ae­ro­bic me­tha­notro­phic com­mu­nities in ma­ri­ne en­vi­ron­ments: evi­dence from in­tact po­lar mem­bra­ne li­pids. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 75, pp. 164-184 (2011).  ScienceDirect
Santos I.R., W.C. Burnett, S. Misra, I G.N.A. Suryaputra, J.P. Chanton, T. Dittmar, R.N. Peterson and P.W. Swarzenski: Ura­ni­um and ba­ri­um cy­cling in a salt wedge sub­ter­ra­ne­an es­tua­ry: The in­flu­ence of ti­d­al pum­ping. In: Che­mi­cal Geo­lo­gy 287, pp. 114-123 (2011).  ScienceDirect
Schmidt M.W.I., M.S. Torn, S. Abiven, T. Dittmar, G. Guggenberger, I. Janssen, M. Kleber, I. Kögel-Knabner, J. Lehmann, D.A.C. Manning, P. Nannipieri, D.P. Rasse, S. Weiner and S.E. Trumbore: Per­sis­tence of soil or­ga­nic mat­ter as an eco­sys­tem pro­per­ty.  In: Na­tu­re 478, pp. 49–56 (2011).  PubMed
Book chapters
Dittmar T. and M. Schlösser: Spu­ren im Meer. In: Mo­le­kü­le aus dem All?, pp. 117-133 (2011).  Full Text
B.Sc theses
Kramer, Christian: Mo­le­ku­la­re Ana­ly­se von ge­lös­tem or­ga­ni­schen Ma­te­ri­al mit­tels ul­trahoch­auf­lö­sen­der Mas­sen­spek­tro­me­trie, ein Me­so­kos­men-Ex­pe­ri­ment. Ba­che­lor the­sis, (2011).
Müllenmeister, Swaantje: Mi­kro­bi­el­le Bil­dung von ge­lös­tem or­ga­ni­schen Ma­te­ri­al - Ein Me­so­kos­men-Ex­pe­ri­ment. Ba­che­lor the­sis, (2011).
M.Sc theses
Manecki, Marcus: The export of dissolved black carbon from a fire-impacted watershed in Southeastern Brazil. Master thesis, (2011).
Rebling, Tammo: Dis­sol­ved black car­bon in sea­wa­ter – ori­gin in hydro­ther­mal sys­tems? Mas­ter the­sis, (2011).
Seibt, Maren: Mi­cro­bi­al de­gra­da­ti­on of na­tu­ral dis­sol­ved or­ga­nic mat­ter: A che­mostat ex­pe­ri­ment. Mas­ter the­sis, (2011).
Stumm, Maren: First mass spec­tro­metric steps towards mole­cu­lar struc­tu­re as­si­gn­ments in ma­ri­ne dis­sol­ved or­ga­nic mat­ter. Mas­ter the­sis, (2011).

Mi­cro­bi­al Fit­ness Group

Kraft, B., M. Strous and H. E. Tegetmeyer: Mi­cro­bi­al ni­tra­te re­spi­ra­ti­on - ge­nes, en­zy­mes and en­vi­ron­men­tal dis­tri­bu­ti­on. In: Jour­nal of bio­tech­no­lo­gy 155 (1), pp. 104-117 (2011).  PubMed
Kartal, B., W. J. Maalcke, N. M. de Almeida, I. Cirpus, J. Gloerich, W. Geerts, H. J. M. Op den Camp, H. R. Harhangi, E. M. Janssen-Megens, K.-J. Francoijs, H. G. Stunnenberg, J. T. Keltjens, M. S. M. Jetten and M. Strous: Mole­cu­lar me­cha­nism of an­ae­ro­bic am­mo­ni­um oxi­da­ti­on. In: Na­tu­re 479, pp. 127-130 (2011).  PubMed
Müller, S. and M. Strous: Con­ti­nuous cul­ti­va­ti­on and ther­mo­dy­na­mic as­pects of ni­che de­fi­ni­ti­on in the ni­tro­gen cy­cle. In: Me­thods in en­zy­mo­lo­gy 486, pp. 33-52 (2011).  PubMed
Wu, M. L., K. F. Ettwig, M. S. Jetten, M. Strous, J. T. Keltjens and L. van Niftrik: A new in­tra-ae­ro­bic me­ta­bo­lism in the ni­tri­te-de­pen­dent an­ae­ro­bic me­tha­ne-oxi­di­zing bac­te­ri­um can­di­da­tus 'me­thy­lo­mi­ra­bi­lis oxy­fe­r­a'. In: Bio­che­mi­cal So­cie­ty tran­sac­tions 39 (1), pp. 243-248 (2011).  PubMed  Full Text
Van de Leemput, I. A., A. J. Veraart, V. Dakos, J. J. M. de Klein, M. Strous and M. Scheffer: Pre­dic­ting mi­cro­bi­al ni­tro­gen pa­thways from ba­sic prin­ci­ples. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13 (6), pp. 1477-1487 (2011).  PubMed

Mi­cro­bi­al Ha­bi­tat Group

Beck, M., T. Riedel, J. Graue, J. Köster, N. Kowalski, C.S. Wu, G. Wegener, Y. Lipsewers, H. Freund, M.E. Böttcher, H.J. Brumsack, H. Cypionka, J. Rullkötter and B. Engelen: Im­print of past and pre­sent en­vi­ron­men­tal con­di­ti­ons on mi­cro­bio­lo­gy and bio­geo­che­mis­try of co­as­tal Qua­tern­ary se­di­ments. In: Bio­geo­sci­en­ces 8, pp. 55–68 (2011).  Biogeosciences  Full Text
Boetius, A. and H. Boetius: Das Dunk­le Pa­ra­dies – Ent­de­ckung der Tief­see. In: Ran­dom Hou­se Ber­tels­mann (Mo­no­graph – Po­pu­lar sci­ence book on the Deep Sea), p. 456 (2011).
Decker, C., M. Morineaux, S. van Gaever, J.C. Caprais, A. Lichtschlag, O. Gauthier, A.C. Andersen and K. Olu: Ha­bi­tat he­te­ro­gen­ei­ty in­flu­en­ces cold-seep ma­cro­fau­nal com­mu­nities wi­t­hin and among seeps along the Nor­we­gi­an mar­gin. Part 1: ma­cro­fau­nal com­mu­ni­ty struc­tu­re. In: Ma­ri­ne Eco­lo­gy, (2011). doi:10.1111/​j.1439-0485.2011.00503.x.  Wiley
Duperron, S., H. Guezi, S.M. Gaudron, P. Pop Ristova, F. Wenzhöfer and A. Boetius: Re­la­ti­ve ab­un­dan­ces of me­tha­ne- and sulphur-oxi­di­sing­sym­bi­onts in the gills of a cold seep mus­sel and link to their po­ten­ti­al en­er­gy sour­ces. In: Geo­bio­lo­gy 9, pp. 481-491 (2011).  PubMed
Girnth, A.C., S. Grünke, A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer and A. Boetius: A no­vel, mat-for­ming Thiomargarita po­pu­la­ti­on as­so­cia­ted with a sul­fi­dic flu­id flow from a deep-sea mud vol­ca­no. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 495-505 (2011).  PubMed
Grünke, S., J. Felden, A. Lichtschlag, A.-C. Girnth, D. de Beer, F. Wenzhöfer and A. Boetius: Ni­che dif­fe­ren­tia­ti­on among mat-for­ming, sul­fi­de-oxi­di­zing bac­te­ria at cold seeps of the Nile Deep Sea Fan (Eas­tern Me­di­ter­ra­ne­an Sea). In: Geo­bio­lo­gy 9, pp. 330-348 (2011).  PubMed
Holler, T., G. Wegener, H. Niemann, C. Deusner, T.G. Ferdelman, A. Boetius, B. Brunner and F. Widdel: Car­bon and sul­fur back flux du­ring an­ae­ro­bic mi­cro­bi­al oxi­da­ti­on of me­tha­ne and cou­p­led sul­fa­te re­duc­tion. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­ence 108, pp. E1484–E1490 (2011).  PubMed  Full Text
Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.U. Hinrichs, A. Teske, A. Boetius and G. Wegener: Ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne mi­cro­bi­al con­sor­tia. In: ISME Jour­nal 5, pp. 1946-1956 (2011).  PubMed  Full Text
Knittel, K. and A. Boetius: An­ae­ro­bic oxi­da­ti­on of me­tha­ne with sul­fa­te. In: En­cy­clo­pe­dia of Geo­bio­lo­gy, pp. 36-47 (2011).
Kostadinov, I., R. Kottmann, A. Ramette, J. Waldmann, P.L. Buttigieg and F.O. Glöckner: Quan­ti­fy­ing the ef­fect of en­vi­ron­ment sta­bi­li­ty on the tran­scrip­ti­on fac­tor re­per­toire of ma­ri­ne mi­cro­bes. In: Mi­cro­bi­al In­for­ma­tics and Ex­pe­ri­men­ta­ti­on 1, p. 9 (2011).  PubMed  Full Text
Ritt, B., C. Pierre, O. Gauthier, F. Wenzhöfer, A. Boetius and J. Sarrazin: Di­ver­si­ty and dis­tri­bu­ti­on of cold-seep fau­na as­so­cia­ted with dif­fe­rent geo­lo­gi­cal and en­vi­ron­men­tal set­tings at mud vol­ca­noes and pock­marks of the Nile Deep-Sea Fan. In: Ma­ri­ne Bio­lo­gy 158, pp. 1187-1210 (2011).  Springer
Rossel, P.E., M. Elvert, A. Ramette, A. Boetius and K.U. Hinrichs: Fac­tors con­trol­ling the dis­tri­bu­ti­on of an­ae­ro­bic me­tha­notro­phic com­mu­nities in ma­ri­ne en­vi­ron­ments: Evi­dence from in­tact po­lar mem­bra­ne li­pids. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 75, pp. 164-184 (2011).  ScienceDirect
Schauer, R., H. Røy, N. Augustin, H.H. Gennerich, M. Peters, F. Wenzhoefer, R. Amann and A. Meyerdierks: Bac­te­ri­al sul­fur cy­cling shapes mi­cro­bi­al com­mu­nities in sur­face se­di­ments of an ul­tra­ma­fic hydro­ther­mal vent­field. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 2633-2648 (2011).  PubMed
Schöttner, S., B. Pfitzner, S. Grünke, M. Rasheed, C. Wild and A. Ramette: Dri­vers of bac­te­ri­al di­ver­si­ty dy­na­mics in per­me­able car­bo­na­te and si­li­ca­te co­ral reef sands from the Red Sea. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, pp. 1815-1826 (2011).  PubMed  Full Text
Schubert, C.J., F. Vazquez, T. Lösekann-Behrens, K. Knittel, M. Tonolla and A. Boetius: Evi­dence for an­ae­ro­bic oxi­da­ti­on of me­tha­ne in se­di­ments of a freshwa­ter sys­tem (Lago di Ca­da­g­no). In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 76, pp. 26-38 (2011).  PubMed
Zielinski, F.U., H.H. Gennerich, C. Borowski, F. Wenzhöfer and N. Dubilier: In situ mea­su­re­ments of hy­dro­gen sul­fi­de, oxy­gen, and tem­pe­ra­tu­re in dif­fu­se fluid­sof an ul­tra­ma­fic-hosted hydro­ther­mal vent­field (Lo­gat­chev, 14°45’N, Mid-At­lan­tic Ridge: Im­pli­ca­ti­ons for che­mo­sym­bio­tic ba­thy­mo­dio­lin mus­sels. In: Geo­che­mis­try, Geo­phy­sics, Geo­sys­tems 12, Q0A­E04 (2011).  ResearchGate
Zinger, L., A. Gobet and T. Pommier: Two de­ca­des of de­scri­bing the un­se­en ma­jo­ri­ty of aqua­tic mi­cro­bi­al di­ver­si­ty. In: Mole­cu­lar Eco­lo­gy, (2011) doi: 10.1111/​j.1365-294X.2011.05362.x.  PubMed
Zinger, L., L.A. Amaral-Zettler, J.A. Fuhrman, M.C. Horner-Devine, S.M. Huse, D.B. Mark Welch, J.B.H. Martiny, M. Sogin, A. Boetius and A. Ramette: Glo­bal pat­terns of bac­te­ri­al beta-di­ver­si­ty in seaf­loor and sea­wa­ter eco­sys­tems. In: PLoS ONE 6, e24570 (2011).  PubMed  Full Text
M.Sc theses
Fernández Méndez, Mar: Pri­ma­ry pro­duc­tivi­ty of sea ice al­gae un­der dif­fe­rent en­vi­ron­men­tal con­di­ti­ons. Mas­ter the­sis, Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy/ Al­fred We­ge­ner In­sti­tu­te for Ma­ri­ne and Po­lar Re­se­arch/ Uni­ver­si­ty of Bre­men/ In­ter­na­tio­nal Max Planck Re­se­arch School, Bre­men (2011).
Krukenberg, Viola: Cha­rac­te­riza­t­i­on of ther­mo­phi­lic an­ae­ro­bic me­tha­notro­phy as­so­cia­ted with sul­fa­te re­duc­tion in Gu­ay­mas Ba­sin en­rich­ment cul­tu­res. Mas­ter the­sis, Uni­ver­si­ty of Bre­men/ In­ter­na­tio­nal Max Planck Re­se­arch School, Bre­men (2011).
Ph.D. theses
Bienhold, C.: Di­ver­si­ty and eco­lo­gy of bac­te­ri­al com­mu­nities at the deep seaf­loor. Ph.D. the­sis, Uni­ver­si­ty of Bre­men/ Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).

Mar­Mic

M.Sc theses
Espinoza, Maria Gabriela Alfaro: Iso­la­ti­on and mole­cu­lar cha­rac­te­riza­t­i­on of ni­tro­gen-fi­xing bac­te­ria as­so­cia­ted with man­gro­ves roots. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Okshevsky, Mira: An in­iti­al in­ves­ti­ga­ti­on of bio­film for­ma­ti­on in Ma­ri­no­bac­ter ad­ha­e­rens HP15: Cha­rac­te­riza­t­i­on of bio­film struc­tu­re and ge­ne­ra­ti­on of a luxR mu­tant li­bra­ry. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Pfeffer, Christian: Bio­geo­electri­ci­ty in ma­ri­ne se­di­ments: Phy­si­cal cha­rac­te­ris­tics of con­duc­tive ele­ments. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Piltz, Bastian: Ni­tro­gen fixa­ti­on and di­ver­si­ty of bent­hic cya­no­bac­te­ria in a Ca­rib­be­an co­ral reef. Mas­ter the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Ph.D. theses
Oberbeckmann, Sonja: Vi­brio spp. in the Ger­man Bight. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
de Rezende, Julia Rosa: Ther­mo­phi­lic en­do­spo­res in Aar­hus Bay and Sval­bard se­di­ments: In­sight into the dis­per­sal of ma­ri­ne mi­cro­or­ga­nisms. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
Käppel, Eva: Ta­xo­no­mic and ge­ne­tic ana­ly­sis of Ma­ri­no­bac­ter sp. HP15 and its che­mot­ac­tic be­ha­viour towards the dia­tom Tha­l­as­sio­si­ra weiss­flogii. Ph.D. the­sis, In­ter­na­tio­nal Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2011).
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