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Publications 2004 - 2023


2023

Baloza, M., Henkel, S., Kasten, S., Holtappels, M., Molari, M. 2023. The Im­pact of Sea Ice Co­ver on Mi­cro­bi­al Com­mu­nities in Ant­arc­tic Shelf Se­di­ments. Mi­cro­or­ga­nisms 11, 1572.doi.org/​10.3390/​mi­cro­or­ga­nisms11061572

Cardozo-Mino, M. G., Salter, I., Nöthig, E.-M., Metfies, K., Ramondenc, S., Wekerle, C., Krumpen, T., Boetius, A., Bienhold, C. 2023. A de­ca­de of mi­cro­bi­al com­mu­ni­ty dy­na­mics on sin­king par­ti­cles du­ring high car­bon ex­port events in the eas­tern Fram Strait. Fron­tiers in Ma­ri­ne Sci­ence 10, 1173384. doi:10.3389/​fmars.2023.1173384.

Fadeev, E., Bastos, C., Hennenfeind, J., Biller, S., Sher, D., Wietz, M., Herndl, G. 2023. Cha­rac­te­riza­t­i­on of mem­bra­ne ve­si­cles in Alteromonas macleodii in­di­ca­tes po­ten­ti­al ro­les in their co­pio­tro­phic life­style. mi­cro­Li­fe 4, 1–11. doi:10.1093/​femsml/​uqac025.

Golikov, A. V., Stauffer, J. B., Schindler, S. V., Taylor, J., Boehringer, L., Purser, A., Sabirov, R. M., Hoving, H.-J. 2023. Mi­les down for lunch: deep-sea in situ ob­ser­va­tions of Arc­tic fin­ned oc­to­pods Cirroteuthis muelleri sug­gest pel­agic–bent­hic fee­ding mi­gra­ti­on. Pro­cee­dings of the Roy­al So­cie­ty B. 290, 20230640. doi:10.1098/​rspb.2023.0640

Gros, V., Bonsang, B., Sarda-Estève, R., Nikolopoulos, A., Metfies, K., Wietz, M., Peeken, I. 2023. Con­cen­tra­ti­ons of dis­sol­ved di­me­thyl sul­fi­de (DMS), me­tha­n­ethi­ol and other tra­ce ga­ses in con­text of mi­cro­bi­al com­mu­nities from the tem­pe­ra­te At­lan­tic to the Arc­tic Oce­an. Bio­geo­sci­en­ces 20, 851–867. doi:0.5194/​bg-20-851-2023

Hoving, H. J. T., Boetius, A., Dunlop, K., Greinert, J., Haeckel, M., Jones, D. O., Simon-Lledo, E., Marcon, Y., Stratmann, T., Suck, I., Sweetman, A. K. 2023. Ma­jor fine-sca­le spa­ti­al he­te­ro­gen­ei­ty in ac­cu­mu­la­ti­on of ge­la­ti­nous car­bon flu­xes on the deep se­abed. Fron­tiers in Ma­ri­ne Sci­ence 10, 119224, doi:10.3389/​fmars.2023.1192242.

Krause, S. J. E., Liu, J., Yousavich, D. J., Robinson, D., Hoyt, D. W., Qin, Q., Wenzhöfer, F., Janssen, F., Valentine, D. L., Treude, T. 2023. Evi­dence of cryp­tic me­tha­ne cy­cling and non-me­tha­no­ge­nic me­thyl­a­mi­ne con­sump­ti­on in the sul­fa­te-re­du­cing zone of se­di­ment in the San­ta Bar­ba­ra Ba­sin, Ca­li­for­nia, Bio­geo­sci­en­ces 20, 4377-4390, doi:10.5194/​bg-20-4377-2023.

Li, X., Zhao, X., Dang, H., Zhang, C., Fernández-Urruzola, I., Liu, Z., Wenzhöfer, F., Glud, R. N. 2023. High va­ria­bi­li­ty in or­ga­nic car­bon sour­ces and mi­cro­bi­al ac­tivi­ties in the hado­pel­agic wa­ters. Lim­nol. Ocea­no­gr. 68, 1704-1718. doi:10.1002/​lno.12379

Meyer, R., Appeltans, W., Duncan, W. D., Dimitrova, M., Gan, Y.-M., Stjernegaard Jeppesen, T., Mungall, C., Paul, D. L., Provoost, P., Robertson, T., Schriml, L., Suominen, S., Walls, R., Sweetlove, M., Ung, V., Van de Putte, A., Wallis, E., Wieczorek, J., Buttigieg, P. L. 2023. Ali­gning Stan­dards Com­mu­nities for Omics Bio­di­ver­si­ty Data: Sustainable Dar­win Core-MIxS In­ter­ope­ra­bi­li­ty. Bio­di­ver­si­ty Data Jour­nal 11, e112420. doi:10.3897/​BDJ.11.e112420.

Meyer, R., Davies, N., Pitz, K. J., Meyer, C., Samuel, R., Anderson, J., Appeltans, W., Barker, K., Chavez, F., Duffy, J. E., Goodwin, K. D., Hudson, M., Hunter, M. E., Karstensen, J., Laney, C., Leinen, M., Mabee, P., Macklin, J. A., Muller-Karger, F., Pade, N., Pearlman, J., Phillips, L., Provoost, P., Santi, I., Schigel, D., Schriml, L. M., Soccodato, A., Suominen, S., Thibault, K. M., Ung, V., van de Kamp, J., Wallis, E., Walls, R., Buttigieg, P. L. 2023. The foun­ding char­ter of the Omic Bio­di­ver­si­ty Ob­ser­va­ti­on Net­work (Omic BON). Gi­ga­Sci­ence 12, gi­a­d068. doi:10.1093/​gi­ga­sci­ence/​gi­a­d068.

Molari, M., Hassenrueck, C., Laso-Pérez, R., Wegener, G., Offre, P., Scilipoti S., Boetius, A. 2023. A hy­dro­ge­notro­phic Sulfurimonas is glo­bal­ly ab­un­dant in deep-sea oxy­gen-sa­tu­ra­ted hydro­ther­mal plu­mes. Na­tu­re Mi­cro­bio­lo­gy 8, 651–665. doi:10.1038/​s41564-023-01342-w.

Pachiadaki, M., Janssen, F. Carreiro-Silva, M., Morato, T., Carreira, G. P. , Frazão, H. C.,  Heimbach, P., Iglesias, I., Muller-Karger, F. E., Santos, M. M., Smith, L. M., Vardaro, M. F., Visser, F., Waniek, J. J., Zinkann, A.-C., Colaço, A. 2023. Co-de­si­gning a mul­ti­di­sci­pli­na­ry deep-oce­an ob­ser­ving pro­gram­me at the Mid-At­lan­tic Ridge in the Azo­res re­gi­on: a blue­print for syn­er­gy in deep oce­an re­se­arch and con­ser­va­ti­on, ICES Jour­nal of Ma­ri­ne Sci­ence 80(2), 352–354, doi:10.1093/​ices­jms/​fsac189.

Priest, T., von Appen, W.-J., Oldenburg, E., Popa, O., Torres-Valdés, S., Bienhold, C., Metfies, K., Boulton, W., Mock, T., Fuchs, B., Amann, R., Boetius, A., Wietz, M. 2023. At­lan­tic wa­ter in­flux and sea-ice co­ver dri­ve ta­xo­no­mic and func­tio­nal shifts in Arc­tic ma­ri­ne bac­te­ri­al com­mu­nities. ISME Jour­nal 17, 1612–1625; doi:10.1038/​s41396-023-01461-6..

Rahlff, J., Wietz, M., Giebel, H., Bayfield, O., Nilsson, E., Bergstroem, K., Kieft, K., Anantharaman, K., Ribas-Ribas, M., Wurl, O., Hoetzinger, M., Antson, A., Holmfeldt, K. 2023. Eco­ge­no­mics and cul­ti­va­ti­on re­veal dis­tinc­tive vi­ral-bac­te­ri­al com­mu­nities in the sur­face mi­cro­lay­er of a Bal­tic Sea slick. ISME Com­mu­ni­ca­ti­ons 3, 97. doi:10.1038/​s43705-023-00307-8

Ramirez-Llodra, E., Argentino, C., Baker, M., Boetius, A., Costa, C., Dahle, H., Denny, E. M., Dessandier, P. A., Eilertsen, M. H., Ferre, B., German, C. R., Hand, K., Hilário, A.,  Hislop, L., Jamieson, J. W., Kalnitchenko, D., Mall, A., Panieri, G., Purser, A.,  Ramalho, S. P., Reeves, E. P., Rolley, L., Pereira, S. I., Ribeiro, P. A., Sert, M. F., Steen, I. H.,  Stetzler, M., Stokke, R., Victorero, L., Vulcano, F., Vågenes, S., Waghorn, K. A., Buenz S. 2023. Hot vents be­ne­ath an icy oce­an. Ocea­no­gra­phy 36, 6-17.

Santi, I., Beluche, O., Beraud, M., Buttigieg, P. L., Casotti, R., Cox, C. J., Cunliffe, M., Davies, N., de Cerio, O. D., Exter, K., Kervella, A. E., Kotoulas, G.,  Lagaisse, R., Laroquette, A., Louro, B., Not, F., Obst, M., Pavloudi, C.,  Poulain, J., Præbel, K., Vanaverbeke, J.,  Pade, N. 2023. Eu­ro­pean ma­ri­ne omics bio­di­ver­si­ty ob­ser­va­ti­on net­work: a stra­te­gic out­li­ne for the im­ple­men­ta­ti­on of omics ap­proa­ches in oce­an ob­ser­va­ti­on. Fron­tiers in Ma­ri­ne Sci­ence 10, 1118120. doi.10.3389/​fmars.2023.1118120.

Stoll, N., Wietz, M., Juricke, S., Pausch, F., Peter, C., Massing, J., Seifert, M., Zeising, M., Käß, M., McPherson, R., Suckow, B. 2023. “Wis­sen­schaft fürs Wohn­zim­mer" − two ye­ars of in­ter­ac­tive, sci­en­ti­fic li­vestreams weekly on YouTube. Po­lar­for­schung 91, 31-43. doi:10.5194/​polf-91-31-2023.

von Jackowski, A., Walter, M., Spiegel, T., Buttigieg, P.L., Molari, M. 2023. Dri­vers of pel­agic and bent­hic mi­cro­bi­al com­mu­nities on Cen­tral Arc­tic se­a­m­ounts. Front. Mar. Sci. 10, 1216442. doi:10.3389/​fmars.2023.1216442.

Xiao, W., Xu, Y., Zhang, C., Lin, J., Wu, W., Lü, X., Tan, J.,  Zhang, X.,  Zheng, F.,  Song, X.,  Zhu, Y.,  Yang, Y., Zhang, H., Wenzhöfer, F., Rowden, A. A., Glud, R. N. 2023. Di­sent­ang­ling ef­fects of sea sur­face tem­pe­ra­tu­re and wa­ter depth on hy­droxy­la­ted iso­pre­no­id GDGTs: In­sights from the ha­dal zone and glo­bal se­di­ments. Geo­phy­si­cal Re­se­arch Let­ters 50, e2023GL103109. doi:10.1029/​2023GL103109.

Zehnle, H., Otersen, C., Benito Merino, D. and Wegener, G. 2023. Po­ten­ti­al for the an­ae­ro­bic oxi­da­ti­on of ben­ze­ne and naph­tha­le­ne in ther­mo­phi­lic mi­cro­or­ga­nisms from the Gu­ay­mas Ba­sin. Fron­tiers in Mi­cro­bio­lo­gy, 14, 1279865. doi:10.3389/​fmi­cb.2023.1279865

Zehnle, H., Laso-Pérez, R., Lipp, J. S., Teske, A. P., Wegener, G. 2023. Candidatus Al­ka­no­pha­ga ar­chaea from Gu­ay­mas Ba­sin hydro­ther­mal vent se­di­ment oxi­di­ze pe­tro­le­um al­ka­nes. Na­tu­re Mi­cro­bio­lo­gy 8, 1199–1212. doi:10.1038/​s41564-023-01400-3.

Zhang, C., Fang, Y.-X., Yin, X., Lai H., Kuang, Z., Zhang, T.,  Xu, X.P.,  Wegener, G., Wang, J.-H., Dong, X. 2023. The ma­jo­ri­ty of mi­cro­or­ga­nisms in gas hy­dra­te-be­a­ring sub­seaf­loor se­di­ments fer­ment ma­cro­mole­cu­les. Mi­cro­bio­me 11, 37. doi:10.1186/​s40168-023-01482-5.

2022

Aguzzi, J., Flögel, S., Marini, S., Thomsen, L., Albiez, J., Weiss, P., Picardi, G., Calisti, M., Stefanni, S., Mirimin, L., Vecchi, F., Laschi, C., Branch, A., Clark, E. B., Foing, B., Wedler, A., Chatzievangelou, D., Tangherlini, M., Purser, A., Dartnell, L., Danovaro, R. 2022. Developing technological synergies between deep-sea and space research. ELEMENTA: Science in the Anthropocene 10, 1-19. doi:10.1525/elementa.2021.00064

Benito Merino, D, Zehnle H, Teske A, Wegener G. 2022. Deep-Bran­ching Anme-1c Ar­chaea Grow at the Up­per Tem­pe­ra­tu­re Li­mit of An­ae­ro­bic Oxi­da­ti­on of Me­tha­ne. Fron­tiers in Mi­cro­bio­lo­gy 13. doi: 10.17615/​g208-0220.

Bienhold, C., Schourup-Kristensen, V., Krumpen, T., Nöthig, E.-M., Wenzhöfer, F., Korhonen, M., Vredenborg, M., Hehemann, L., Boetius, A. 2022. Ef­fects of sea ice re­tre­at and oce­an war­ming on the Lap­tev Sea con­ti­nen­tal slo­pe eco­sys­tem (1993 vs 2012). Fron­tiers in Ma­ri­ne Sci­ence 9. doi:10.3389/​fmars.2022.1004959.

Busch, K., Slaby, B. M., Bach, W., Boetius, A., Clefsen, I., Colaço, A., Creemers, M., Cristobo, J., Federwisch, L., Franke, A., Gavriilidou, A., Hethke, E., Kenchington, F., Mienis, S., Mills, A., Riesgo, P., Ríos, E. M., Roberts, D., Sipkema, L., Pita, P. J., Schupp, J., Xavier, H. T., Rapp, H. T., Hentschel, U. 2022. Bio­di­ver­si­ty, en­vi­ron­men­tal dri­vers, and sustaina­bi­li­ty of the glo­bal deep-sea spon­ge mi­cro­bio­me. Na­tu­re Com­mu­ni­ca­ti­ons 13(1), 1-6. doi:10.1038/​s41467-022-32684-4.

Chadwick, G. L., Skennerton, C. T., Laso-Pérez, R.,  Leu,A. O., Speth, D. R., Yu, H., Morgan-Lang, C, Hatzenpichler, R., Goudeau, D., Malmstrom, R., Brazelton, W. J., Woyke, T., Hallam, S. J., Tyson, G. W., Wegener, G., Boetius,  A., Orphan, V. J. 2022. Com­pa­ra­ti­ve ge­no­mics re­veals elec­tron trans­fer and syn­tro­phic me­cha­nisms dif­fe­ren­tia­ting me­tha­notro­phic and me­tha­no­ge­nic ar­chaea. PLoS Biol 20(1), e3001508. doi:10.1371/​jour­nal.pbio.3001508.

Chatzievangelou, D., Thomsen, L., Doya, C., Purser, A., Jacopo, A. 2022. Tran­sects of the deep: Op­por­tu­nities with tele-ope­ra­ted re­si­dent seaf­loor ro­bots. Fron­tiers in Ma­ri­ne Sci­ence 9, 833617. doi:10.3389/​fmars.2022.833617.

Cuvelier, D., Ramalho, S. P., Purser, A., Haeckel, M. 2022. Im­pact of re­turning sci­en­ti­fic crui­ses and pro­lon­ged on-site pre­sence on lit­ter ab­un­dance at the deep-sea no­du­le fiel­ds in the Peru Ba­sin. Ma­ri­ne Pol­lu­ti­on Bul­le­tin 184, 114162. doi:10.1016/​j.mar­pol­bul.2022.114162.

Dorschel, B., Hehemann, L., Viquerat, S., Warnke, F., Dreutter, S., Tenberge, Y. S., Accettella, D., An, L., Barrios, F., Bazenova, E., Black, J., Bohoyo, F., Davey, C., De Santis, L., Dotti, C. E., Fremand, A. C., Frewell, P. T., Gales, J. A., Gao, J., Gasperini, L., Greenbaum, J. S., Jencks, J. H., Hogan, K., Hong, J. K., Jakobsson, M., Jensen, L., Kool, J., Larin, S., Larter, R. D., Leitchenkov, G., Loubrieu, B., Mackay, K., Mayer, L., Millan, R., Morlighem, M., Navidad, F., Nitsche, F. O., Nogi, Y., Pertuisot, C., Post, A. L., Pritchard, H. D., Purser, A., Rebesco, M., Rignot, E., Roberts, J. L., Rovere, M., Ryzhov, I., Sauli, C., Schmitt, T., Silvano, A., Smith, J., Snaith, H., Tate, A. J., Tinto, K., Vandenbossche, P., Weatherall, P., Wintersteller, P., Yang, C., Zhang, T., Arndt, J.E. 2022. The in­ter­na­tio­nal ba­thy­metric chart of the Sou­thern Oce­an Ver­si­on 2. Sci­en­ti­fic Data 9, 275. doi:10.1038/​s41597-022-01366-7

Gollner, S. , Haeckel, M. , Janssen, F. , Lefaible, N. , Molari, M. , Papadopoulou, S., Reichart, G. , Alexandre, J. T. , Vink, A., Vanreusel, A. 2022. Resto­ra­ti­on ex­pe­ri­ments in po­ly­me­tal­lic no­du­le are­as. In­te­gra­ted. En­vi­ron­men­tal As­sess­ment and Ma­nage­ment 18(3), 682-696. doi:10.1002/​ieam.4541.

German, C. R., Reeves, E. P., Türke, A., Diehl, A., Albers, E., Bach, W.,  Purser,A. . Ramalho, S. P.  Suman, S. Mertens, C. Walter, M.Ramirez-Llodra, E.  Schlindwein, V. Bünz S., Boetius, A. 2022. Vol­ca­ni­cal­ly hosted ven­ting with in­di­ca­ti­ons of ul­tra­ma­fic in­flu­ence at Au­ro­ra hydro­ther­mal field on Gak­kel Ridge. Na­tu­re Com­mu­ni­ca­ti­ons, 13(1), 1-11. doi:10.1038/​s41467-022-34014-0

Hörstmann, C., Buttigieg, P. L., John, U., Raes, E. J., WolfGladrow, D., Bracher, A., Waite, A. M. 2022. Mi­cro­bi­al di­ver­si­ty through an ocea­no­gra­phic lens: re­fi­ning the con­cept of oce­an pro­vin­ces through tro­phic‐le­vel ana­ly­sis and pro­duc­tivi­ty‐spe­ci­fic length sca­les. En­vi­ron­men­tal Mi­cro­bio­lo­gy, 24(1), 404-419. doi:10.1111/​1462-2920.15832

Hoving, H. J., Amon, D., Bodur, Y., Haeckel, M., Jones, D. O. B., Neitzel, P., Simon-Lledo, E., Smith, C. R., Stauffer, J. B., Sweetman, A. K., Purser, A. 2022. The abys­sal voya­ge of the ar­go­nauts: Deep-sea in situ ob­ser­va­tions re­veal the cont­ri­bu­ti­on of ce­pha­lo­pod egg ca­ses to the (in)or­ga­nic car­bon pump. Deep Sea Re­se­arch Part 1 183, 103719. DOI:10.1016/​j.dsr.2022.103719

Jørgensen, B. B., Wenzhöfer, F., Egger, M., Glud, R. N. 2022. Se­di­ment oxy­gen con­sump­ti­on: Role in the glo­bal ma­ri­ne car­bon cy­cle. Earth-Sci­ence Re­views 228, doi:103987.10.1016/​j.ear­sci­rev.2022.103987.

Leinen, M., Chavez, F., Meyer, R., Buttigieg, P. L., Davies, N., Casotti, R., Fischer, A. 2022. The Oce­an Bio­mole­cu­lar Ob­ser­ving Net­work (OBON). Ma­ri­ne Tech­no­lo­gy So­cie­ty Jour­nal, 56(3), 106-107. doi:10.7554/​eLi­fe.67667.

Leonard, K., Buttigieg, P. L., Hudson, M., Paul, K., Pearlman, J., Juniper, S. K. 2022. Two-eyed see­ing: Em­bra­c­ing the power of In­di­ge­nous know­ledge for a healthy and sustainable Oce­an. Plos Bio­lo­gy 20(10), e3001876. doi:10.1371/​jour­nal.pbio.3001876

Linley, T. D., Gerringer, M. E., Richie, H., Weston, J. N. J., Scott-Murray, A., Fernandez, V., Hernandez, J. L. C., Wenzhöfer, F., Glud, R. N., Jamieson, A. J. 2022. In­de­pen­dent ra­dia­ti­on of snail­fis­hes into the ha­dal zone con­fir­med by Paraliparis selti sp. nov. (Scor­pa­e­ni­for­mes: Lip­a­ri­dae) from the Ata­ca­ma Trench, SE Pa­ci­fic. Ma­ri­ne Bio­di­ver­si­ty 52, 56.  doi:10.1007/​s12526-022-01294-0. 

Morganti, T. M., Slaby, B. M., de Kluijver, A., Busch, K., Hentschel, U., Middelburg, J., Mollenhauer, G., Dannheim, J., Rapp, H., Purser, A., Boetius, A. 2022. Gi­ant spon­ge grounds of Cen­tral Arc­tic se­a­m­ounts are as­so­cia­ted with extinct seep life. Na­tu­re Com­mu­ni­ca­ti­ons 13(638). doi:10.1038/​s41467-022-28129-7.

Oguri, K., Turnewitsch, R., Masque, P., Zabel, M., Stewart, H. A., Stehlikova, J., MacKinnon, G., Rowden, A. A., Wenzhöfer, F., Glud, R. N. 2022. Se­di­men­ta­ti­on, Ac­cu­mu­la­ti­on and Car­bon Bu­ri­al in Four Ha­dal Trench Sys­tems. Jour­nal of Geo­phy­si­cal Re­se­arch: Bio­geo­sci­en­ces 127, e2022JG006814. doi:10.1029/​2022JG006814.

Shimabukuro, M., Zeppilli, D., Leduc, D., Wenzhöfer, F., Berg, P., Rowden, A. A.,  Glud, R. N. 2022. In­tra-and in­ter-spa­ti­al va­ria­bi­li­ty of mei­ofau­na in ha­dal tren­ches is lin­ked to mi­cro­bi­al ac­tivi­ty and food avail­a­bi­li­ty. Sci­en­ti­fic Re­ports 12(1), 1-11. doi:10.1038/​s41598-022-08088-1.

Schoening, T., Durden, J. M., Faber, C., Felden, J., Heger, K., Hoving, H.-J., Kiko, R., Köser, K., Krämmer, C., Kwasnitschka, T., Möller, K. O., Nakath, D., Nass, A., Nattkemper, T. W., Purser, A., Zurowietz, M. 2022. Ma­king ma­ri­ne image data FAIR. Sci. Data 9, 414. doi:10.1038/​s41597-022-01491-3

Smith, L. M., Cimoli, L., LaScala-Gruenewald, D., Pachiadaki, M., Phillips, B., Pillar, H., Stopa, J. E., Baumann-Pickering, S., Beaulieu, S. E., Bell, K. L., Harden-Davies, H., Gjerde, K. M., Heimbach, P., Howe, B., Janssen, F., Levin, L. A., Ruhl, H. A., Soule, A., Stocks, K., Vardaro, M. F., Wright, D. J. 2022. The Deep Oce­an Ob­ser­ving Stra­te­gy: Ad­dres­sing Glo­bal Chal­len­ges in the Deep Sea Through Col­la­bo­ra­ti­on, Ma­ri­ne Tech­no­lo­gy So­cie­ty Jour­nal 56(3), 50-66. doi:10.4031/​MTSJ.56.3.11.

Stauffer, J., Purser, A., Griffiths, H. G., Smith, C. R., Hoving, H.-J. 2022. Food falls from the nor­thwes­tern Wed­dell Sea. Fron­tiers in Ma­ri­ne Re­se­arch 9, 1055318. doi:10.3389/​fmars.2022.1055318

Stratmann, T. 2022. The Pro­ka­Bio­Den da­ta­ba­se, a glo­bal da­ta­ba­se of bent­hic pro­ka­ryo­tic bio­mas­ses and den­si­ties in the ma­ri­ne re­alm. Sci­en­ti­fic Data 9(1), 1-10.

Stratmann, T., Simon-Lledó, E., Morganti, T. M., de Kluijver, A., Vedenin, A., Purser, A. 2022. Ha­bi­tat ty­pes and me­ga­bent­hos com­po­si­ti­on from three spon­ge-do­mi­na­ted high-Arc­tic se­a­m­ounts. Sci­en­ti­fic Re­ports 12(1), 206, doi:10.10.1038/​s41598-022-25240-z.

Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sánchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., Fernandez-Guerra, A. 2022. Uni­fy­ing the known and un­k­nown mi­cro­bi­al co­ding se­quence space. eLi­fe 11, e67667. doi:10.7554/​eLi­fe.67667.

von Jackowski, A., Becker, K. W., Wietz, M., Bienhold, C., Zäncker, B., Nöthig, E.-M., Engel, A. 2022. Va­ria­ti­ons of mi­cro­bi­al com­mu­nities and sub­stra­te re­gimes in the eas­tern Fram Strait bet­ween sum­mer and fall. En­vi­ron­men­tal Mi­cro­bio­lo­gy 24, 4124-4136. doi: 10.1111/​1462-2920.16036.

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Arnosti, C., Wietz, M., Brinkhoff, T., Hehemann, J.-H., Probandt, D., Zeugner, L., Amann, R. 2021. The Bio­geo­che­mis­try of Ma­ri­ne Po­ly­sac­cha­ri­des: Sour­ces, In­ven­to­ries, and Bac­te­ri­al Dri­vers of the Car­bo­hy­dra­te Cy­cle. Annu. Rev. Mar. Sci. 13, 81-108. doi:10.1146/​annu­rev-ma­ri­ne-032020-012810.

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Cardozo-Mino, M. G., Fadeev, E., Salman-Carvalho, V., Boetius, A. 2021. Spa­ti­al Dis­tri­bu­ti­on of Arc­tic Bac­te­rio­plank­ton Ab­un­dance Is Lin­ked to Dis­tinct Wa­ter Mas­ses and Sum­mer­ti­me Phy­to­plank­ton Bloom Dy­na­mics (Fram Strait, 79°N). Front. Mi­cro­bi­ol. 12, 1067. doi:10.3389/​fmi­cb.2021.658803.

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Hahn, C. J., Lemaire, O. N., Kahnt, J., En­gil­berge, S., Wegener, G., Wag­ner, T. 2021. Crys­tal struc­ture of a key en­zyme for an­aer­obic eth­ane ac­tiv­a­tion. Sci­ence 373(6550), 118-121. doi:10.1126/​sci­ence.ab­g1765.

Lund-Hansen, L. C., Bjerg-Nielsen, M., Stratmann, T., Hawes, I., Sorrell, B. K. 2021 Up­wel­ling ir­ra­di­an­ce be­low sea ice - PAR in­ten­si­ties and spec­tral dis­tri­bu­ti­ons. Jour­nal of Ma­ri­ne Sci­ence and En­gi­nee­ring 9, 830, doi:10.3390/​jm­se9080830

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Morganti, T., Purser, A., Rapp,  H. T., German, C., Jakuba, M. V., Hehemann, L., Blendl, J., Slaby, B., Boetius, A. 2021. In situ ob­ser­va­ti­on of spon­ge trails in­di­ca­te com­mon spon­ge lo­co­mo­ti­on in the deep cen­tral Arc­tic. Cur­rent Bio­lo­gy  31(8), R368-R370. doi: 10.1016/​j.cub.2021.03.014.

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Weston, J. N. J., Espinosa-Leal, L., Wainwright, J. A., Stewart, E. C. D, Gonzalez, C. E., Linely, T. D., Reid W. D. K., Hidalgo, P., Oliva, M. E., Ulloa, O., Wenzhöfer, F., Glud, R. N., Escribano, R., Jamieson, A. J. 2021. Eurythenes atacamensis sp. nov. (Cru­stacea: Am­phi­po­da) ex­hi­bits on­to­ge­ne­tic ver­ti­cal stra­ti­fi­ca­ti­on across abys­sal and ha­dal depths in the Ata­ca­ma Trench, eas­tern South Pa­ci­fic Oce­an. Ma­ri­ne Bio­di­ver­si­ty 51, 51 doi:10.1007/​s12526-021-01182-z.

Wietz, M., Bienhold, C., Metfies, K., Torres-Valdes, S., von Appen, W.-J., Salter, I., Boetius, A. 2021. The po­lar night shift: Sea­so­nal dy­na­mics and dri­vers of Arc­tic Oce­an mi­cro­bio­mes re­vea­led by au­to­no­mous sam­pling. ISME Com­mu­ni­ca­ti­ons 1, 76. doi:10.1038/​s43705-021-00074-4.

Wolter, L. A., Mitulla, M., Kalem, J., Daniel, R., Simon, M., Wietz, M. 2021. CA­Zy­mes in Maribacter dokdonensis 62-1 from the Pa­ta­go­ni­an shelf: Com­pa­ri­son with re­la­ted flav­o­bac­te­ria and a co-oc­cur­ring Alteromonas strain. Front. Mi­cro­bi­ol. 12, 628055. doi:10.3389/​fmi­cb.2021.628055.

Wolter, L. A., Wietz, M., Ziesche, L., Breider, S., Leinberger, J., Poehlein, A., Daniel, R., Schulz, S., Brinkhoff, T. 2021. Pseudooceanicola algae sp. nov., iso­la­ted from the ma­ri­ne ma­cro­al­ga Fucus spiralis, shows ge­no­mic and phy­sio­lo­gi­cal ad­ap­ta­ti­ons for an al­gae-as­so­cia­ted life­style. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 44(1), 126166. doi:10.1016/​j.syapm.2020.126166.

Xu, Y., Ji, Z., Xinxin, L., Luo, M., Xiao, W., Fang, J., Rashid, H., Peng, Y., Li, W., Wenzhöfer, F., Rowden, A. A., Glud, R. N. 2021. Dis­tri­bu­ti­on, sour­ce and bu­ri­al of se­di­men­ta­ry or­ga­nic car­bon in Ker­ma­dec and Ata­ca­ma tren­ches. Jour­nal of Geo­phy­si­cal Re­se­arch: Bio­geo­sci­en­ces 126, e2020JG006189. doi:10.1029/​2020JG006189

 2020

Aro­mo­keye DA, Kul­kar­ni AC, El­vert M, Wegener G, Hen­kel S, Coffi­net S, Eick­horst T, Oni OE, Rich­ter-Heit­mann T, Schna­ken­berg A, Taub­ner H, Wun­der L, Yin X, Zhu Q, Hin­richs K-U, Kas­ten S, Fried­rich MW (2020) Ra­tes and mi­cro­bi­al play­ers of iron-dri­ven an­ae­ro­bic oxi­da­ti­on of me­tha­ne in me­tha­nic ma­ri­ne se­di­ments. Frontiers in Microbiology 10:3041. 10.3389/fmicb.2019.03041

 

Di­mitro­va M, Meyer R, Buttigieg PL, Ge­or­giev T, Zhe­le­zov G, De­mi­rov S, Smith VS, Pe­nev L (2020) Stream­li­ned Con­ver­si­on of Omics Me­ta­da­ta into Ma­nu­script Fa­ci­li­ta­tes Pu­blis­hing and Reu­se of Omics Data. Biodiversity Information Science and Standards 4: e59041. https://doi.org/10.3897/biss.4.59041

 

Haf­fert L , Ha­eckel M, de Stig­ter H, Janssen F (2020) As­ses­sing the tem­po­ral sca­le of deep-sea mi­ning im­pacts on se­di­ment bio­geo­che­mis­try, Biogeosciences 17(10):2767-2789. doi: 10.5194/bg-17-2767-2020

 

Hahn CJ, *Laso-Pérez R, Vul­ca­no F,  Va­zio­u­ra­kis K-M, Stok­ke R, Steen IH,  Tes­ke, A,  Boetius A, Lie­be­ke L, Amann R, Knit­tel K,  Wegener G (2020) Candidatus Etha­nope­redens, a ther­mo­phi­lic ge­nus of ar­chaea me­dia­ting the an­ae­ro­bic oxi­da­ti­on of etha­ne. mBio 11:e00600-20. https://doi.org/10.1128/mBio.00600-20.

 

*Hoffmann K, Bienhold C, Buttigieg PL, Knittel K, *Laso-Pérez R, *Rapp JZ,  Boetius A, Offre P (2020) Di­ver­si­ty and me­ta­bo­lism of Woeseiales bac­te­ria, glo­bal mem­bers of ma­ri­ne se­di­ment com­mu­nities. ISME J. https://doi.org/10.1038/s41396-020-0588-4

 

Ka­za­ni­dis G, Ore­jas C, Bor­ja A, Ken­ching­ton E, Hen­ry L-A, Cal­le­ry O, Car­rei­ro-Sil­va M, Egils­dót­tir H, Gi­a­comel­lo E, Gre­han A, Me­not L, Mora­to T, Ragnars­son SA, Rue­da JL, Stir­ling D, #Stratmann T, van Oeve­len D, Pa­li­al­exis A, John­son D, Ro­berts JM (2020) As­ses­sing the en­vi­ron­men­tal sta­tus of selec­ted North At­lan­tic deep-sea eco­sys­tems. Ecological Indicators 119 (106624). doi: 10.1016/j.ecolind.2020.106624.

 

Kie­sel J, Bienhold C, Wenzhöfer F, Link H (2020) Va­ria­bi­li­ty in Bent­hic Eco­sys­tem Func­tio­n­ing in Arc­tic Shelf and Deep-Sea Se­di­ments: As­sess­ments by Bent­hic Oxy­gen Uptake Ra­tes and En­vi­ron­men­tal Dri­vers. Front. Mar. Sci. 7:426. doi: 10.3389/fmars.2020.00426

 

Koch H,  Germscheid N, Free­se HM, No­rie­ga-Or­tega B, Lück­ing D, Ber­ger M, Qiu G, Mar­z­in­el­li EM, Camp­bell AH, Stein­berg PD, Over­mann J, Ditt­mar T, Si­mon M, #Wietz M (2020) Ge­n­omic, meta­bo­lic and phen­o­ty­pic vari­ab­il­ity shapes eco­lo­gi­cal dif­fer­en­ti­ati­on and in­tras­pe­cies in­ter­ac­ti­ons of Alteromonas macleodii. Sci­entific Re­ports 10:809 https://doi.org/10.1038/s41598-020-57526-5

 

Lund-Han­sen LC, Bendt­sen J, #Stratmann T, Ton­boe R, Ol­sen SM, Mar­ka­ger S, Sor­rell BK (2020) Will low pri­ma­ry pro­duc­tion ra­tes in the Amund­sen Ba­sin (Arc­tic Oce­an) re­main low in a fu­ture ice-free set­ting, and what go­verns this pro­duc­tion? Journal of Marine Systems 205, 103287, doi:10.1016/​j.jmar­sys.2019.103287.

 

Molari M, Janssen F, *Vonnahme TR, Wenzhöfer F, Boetius A (2020) The cont­ri­bu­ti­on of mi­cro­bi­al com­mu­nities in po­ly­me­tal­lic no­du­les to the di­ver­si­ty of the deep-sea mi­cro­bio­me of the Peru Ba­sin (4130 − 4198 m depth). Biogeosciences 17:3203-3222. doi: 10.5194/bg-17-3203-2020

 

Ono S, Rhim JH,  Gru­en DS,  Taub­ner H, Köl­ling M, Wegener G (2020) Clum­ped Iso­to­po­lo­gue Frac­tio­na­ti­on by Mi­cro­bi­al Cul­tu­res Per­for­ming the An­ae­ro­bic 10 Oxi­da­ti­on of Me­tha­ne. Geochim. Cosmochim Acta. 293:70-97.  https://doi.org/10.1016/j.gca.2020.10.015

 

#Otte JM (2020) Sharing elec­trons: An ex­tra­or­di­na­ry fri­endship bet­ween bac­te­ria. Front. Young Minds. 8:543259. doi: 10.3389/frym.2020.543259.

 

Stratmann T, van Oeve­len D, Mar­tí­nez Ar­bi­zu P, Wei C-L, Liao J-X, Cus­son M, Scro­sa­ti R, Ar­cham­bault P, Snel­gro­ve PVR, Ra­mey-Bal­ci P, Burd B, Ken­ching­ton E, Gil­kin­son K, Bel­ley R, So­e­ta­ert K (2020) The Ben­Bio­Den da­ta­ba­se, a glo­bal da­ta­ba­se for meio-, ma­cro- and me­ga­bent­hic bio­mass and den­si­ties. Scientific Data 7(206). doi:10.1038/s41597-020-0551-2.

 

*Rossel PE, Bienhold C, Hehe­mann L, Ditt­mar T, Boetius A (2020) Mole­cu­lar Com­po­si­ti­on of Dis­sol­ved Or­ga­nic Mat­ter in Se­di­ment Po­re­wa­ter of the Arc­tic Deep-Sea Ob­ser­va­to­ry HAUS­GAR­TEN (Fram Strait). Frontiers in Marine Science 7(428). DOI=10.3389/fmars.2020.00428

 

de Jon­ge DSW, Stratmann T, Lins L, Van­reu­sel A, Purser A, Mar­con Y, Ro­d­ri­gues CF, Ra­va­ra A, Es­que­te P, Cun­ha MR, Si­mon-Lle­dó R, van Breu­gel P, Sweet­man AK, So­e­ta­ert K, van Oeve­len D. (2020) Abys­sal food-web mo­del in­di­ca­tes fau­nal car­bon flow re­co­very and im­pai­red mi­cro­bi­al loop 26 ye­ars af­ter a se­di­ment dis­tur­ban­ce ex­pe­ri­ment. Progress in Oceanography 189(102446). doi: 10.1016/j.pocean.2020.102446

 

*Vonnahme TR, Molari M, Janssen F, Wenzhöfer F, Ha­eckel M, Tit­schack T, Boetius A (2020) Ef­fects of a deep-sea mi­ning ex­pe­ri­ment on seaf­loor mi­cro­bi­al com­mu­nities and func­tions af­ter 26 ye­ars. Science Advances 6(18) eaa­z5922. DOI: 10.1126/sciadv.aaz5922

 

Wang Y, Wegener G, Ruff SE, Wang F (2020) Me­thyl/​al­kyl-co­en­zy­me M re­duc­ta­se-ba­sed an­ae­ro­bic al­ka­ne oxi­da­ti­on in ar­chaea. Environmental Microbiologyhttps:// doi.org/10.1111/1462-2920.15057

 

Whi­te RH, Al­len KD, We­gener G (2019) Iden­ti­fic­a­tion of a Re­dox Act­ive Thi­o­quin­ox­alinol Sul­fa­te Com­pound Pro­du­ced by an An­aer­obic Meth­ane-Ox­id­iz­ing Mi­cro­bial Con­sor­tium, ACS omega 4(27) 22613-22622. https://doi.org/10.1021/acsomega.9b03450

 

Wu W, Mea­dor TB, Kön­ne­ke M, El­vert M, Wegener G, Hin­richs KU (2020) Sub­stra­te‐de­pen­dent in­cor­po­ra­ti­on of car­bon and hy­dro­gen for li­pid bio­syn­the­sis by Me­tha­no­sar­ci­na bar­ke­ri. Environmental Microbiology Reports, 12(5):555-567. https://doi.org/10.1111/1758-2229.12876

 

2019

An­sor­ge R, Ro­ma­no S, Sa­ya­ve­dra L, Gon­zá­lez Por­ras M, Kup­c­zok A, #Tegetmeyer HE, Pe­ter­sen J, Du­bi­lier N (2019) Func­tio­nal di­ver­si­ty enables mul­ti­ple sym­bi­ont strains to co­exist in deep-sea mus­sels. Nature Microbiology 4:2487–2497. doi:10.1038/s41564-019-0572-9.

 

*Morganti TM, Ri­bes M, Ya­hel G, Coma R (2019) Size Is the Ma­jor De­ter­mi­nant of Pum­ping Ra­tes in Ma­ri­ne Spon­ges. Frontiers in Physiology 10:1474. doi: 10.3389/fphys.2019.01474

 

As­sié A, Leisch N, Mei­er D, Gru­ber-Vo­di­cka H, #Te­get­meyer HE, Mey­er­dier­ks A, Klei­ner M, Hinz­ke T, Joye S, Sax­ton M, Du­bi­lier N, Pe­ter­sen J (2019) Ho­ri­zon­tal ac­qui­si­ti­on of a patch­work Cal­vin cy­cle by sym­bio­tic and free-li­ving Cam­py­lo­bac­te­ro­ta (for­mer­ly Ep­si­lon­pro­te­ob­ac­te­ria).ISME Journal 14:104–122. doi:10.1038/​s41396-019-0508-7

 

Bax NJ, Mi­los­la­vich P, Mul­ler-Kar­ger FE, Al­lain V, Ap­pel­tans W, Bat­ten SD, Be­nedet­ti-Cec­chi L, Buttigieg PL et al (2019) A re­s­pon­se to sci­en­ti­fic and so­cie­tal nee­ds for ma­ri­ne bio­lo­gi­cal ob­ser­va­tions. Frontiers in Marine Science 6(395).doi.org/10.3389/fmars.2019.00395

  Boetius A (2019) Glo­bal chan­ge mi­cro­bio­lo­gy - big ques­ti­ons about small life for our fu­ture. Nature Reviews Microbiology 17:331-332 doi:10.1038/s41579-019-0197-2
 

Bra­eck­man U, Pa­sot­ti F, Váz­quez S, Za­cher K, *Hoffmann R, El­vert M, Mar­chant H, Buck­ner C, Quar­ti­no ML, Mac­Cor­mack W, So­e­ta­ert K, Wenzhöfer F, Van­reu­sel A (2019) De­gra­da­ti­on pa­thways of ma­cro­al­gal de­t­ri­tus in shal­low co­as­tal Ant­arc­tic se­di­ments. Limnology and Oceanography 64:1423-1441. doi:10.1002/lno.11125

 

Brown P, RE­LISH Con­sor­ti­um (Molari M), Zhou Y (2019) Lar­ge ex­pert-cu­ra­ted da­ta­ba­se for bench­mar­king do­cu­ment si­mi­la­ri­ty de­tec­tion in bio­me­di­cal li­te­ra­tu­re se­arch. Database ba­z085. doi.org/10.1093/database/baz085

 

Buck JJ, Bain­bridge SJ, Bur­ger EF, Kra­berg A, Ca­sa­ri M, Dar­roch L, Del Rio J, Met­fies K, De­l­o­ry E, Fi­scher PF, Gard­ner T, Hef­fer­n­an R, Jir­ka S, Kok­kina­ki A, Loebl M, Buttigieg PL et al (2019) Oce­an data pro­duct in­te­gra­ti­on through in­no­va­ti­on-The next le­vel of data in­ter­ope­ra­bi­li­ty. Frontiers in Marine Science 6:1-19. doi.org/10.3389/fmars.2019.00032

 

Ca­no­ni­co G, Buttigieg PL, Mon­tes E, Stepi­en CA, Wright D, Ben­son A et al. (2019) Glo­bal Ob­ser­va­tio­nal Nee­ds and Re­sour­ces for Ma­ri­ne Bio­di­ver­si­ty. Frontiers in Marine Science 6(367). doi.org/10.3389/fmars.2019.00367

 

Ca­vic­chio­li, R, Ripp­le WJ, Tim­mis KN, Azam F, Bak­ken LR, Bay­lis M, Beh­ren­feld MJ, Boetius A et al (2019) Sci­en­tist­s’ warning to hu­ma­ni­ty: mi­cro­or­ga­nisms and cli­ma­te chan­ge. Nature Reviews Microbiology 17:569-586. doi:10.1038/s41579-019-0222-5

 

Har­dis­ty AR, Mi­che­ner WK, Ago­s­ti D, Gar­cía EA, Bas­tin L, Bel­bin L, Bow­serg A, Buttigieg PL et al (2019) The Bari Ma­ni­fes­to: An in­ter­ope­ra­bi­li­ty frame­work for es­sen­ti­al bio­di­ver­si­ty va­ria­bles. Ecological informatics 49:22-31. doi.org/10.1016/j.ecoinf.2018.11.003

 

*Hoffmann R, Al-Han­dal AY, Wul­ff A, De­re­gi­bus D, Za­cher K, Quar­ti­no ML, Wenzhöfer F, Bra­eck­mann U (2019) Im­pli­ca­ti­ons of gla­ci­al melt-re­la­ted pro­cess on the po­ten­ti­al pri­ma­ry pro­duc­tion of a mi­cro­phy­to­bent­hic com­mu­ni­ty in Pot­ter Cove (Ant­arc­tica). Frontiers in Marine Science 6:655. doi.org/10.3389/fmars.2019.00655

 

Koch H, Dür­wald A, Schwe­der T, No­rie­ga-Or­te­ga B, Vi­dal-Mel­go­sa S, Hehe­mann JH, Ditt­mar T, Free­se HM, Be­cher D, Si­mon M, #Wietz M (2019) Bi­pha­sic cel­lu­lar ad­ap­ta­ti­ons and eco­lo­gi­cal im­pli­ca­ti­ons of Alteromonas macleodii de­gra­ding a mix­tu­re of al­gal po­ly­sac­cha­ri­des. The ISME Journal 13:92–103. doi:10.1038/s41396-018-0252-4

 

Koch H, Free­se HM, Hahn­ke RL, Si­mon M, #Wietz M (2019) Ad­ap­ta­ti­ons of Alteromonas sp. 76-1 to po­ly­sac­cha­ri­de de­gra­da­ti­on: A CA­Zy­me plas­mid for ul­van de­gra­da­ti­on and two al­gi­n­o­ly­tic sys­tems. Frontiers in Microbiology 10:504. doi:10.3389/fmicb.2019.00504

  Krum­pen T, Bel­ter HJ, Boetius A, Damm E, Haas C, Hend­ricks S, Ni­co­laus M, Nö­thig E-M, Paul S, Pee­ken I, Ri­cker R, Stein R (2019) Arc­tic war­ming in­ter­rupts the Trans­po­lar Drift and af­fects long-ran­ge trans­port of sea ice and ice-raf­ted mat­ter. Scientific Reports 9(1):5459. doi:10.1038/s41598-019-41456-y
  Laso-Pérez R, Hahn C, van Vliet DM, *Tegetmeyer H, Schu­botz F, Smit NT, Pape T, Sah­ling H, Bohr­mann G, Boetius A, Knit­tel K, Wegener G (2019) An­ae­ro­bic de­gra­da­ti­on of non-me­tha­ne al­ka­nes by "Can­di­da­tus Me­tha­no­la­pa­ria" in hy­dro­c­ar­bon seeps of the Gulf of Me­xi­co. mBio 10(4):e01814-19. doi:10.1128/mBio.01814-19
 

Le­vin LA, Bett BJ, Gates AR, Heim­bach P, Howe BM, Janssen F, et al (2019) Glo­bal Ob­ser­ving Nee­ds in the Deep Oce­an. Fron­tiers in Ma­ri­ne Sci­ence, 6: 241, doi:10.3389/fmars.2019.00241

  Me­ven­kamp L, Gui­li­ni K, Boetius A, Gra­ve JD, La­force B, Van­den­berg­he D, Vinc­ze L, Van­reu­sel A (2019) Re­s­pon­ses of an abys­sal mei­o­bent­hic com­mu­ni­ty to short-term bu­ri­al with crus­hed no­du­le par­ti­cles in the south-east Pa­ci­fic. Biogeosciences 16(11):2329-2341. doi:10.5194/bg-16-2329-2019
 

Molari M, Gui­li­ni K, Lins L, Ra­met­te A, Van­reu­sel A (2019) CO2 le­a­ka­ge can cau­se loss of bent­hic bio­di­ver­si­ty in sub­ma­ri­ne sands. Marine environmental research 144:213-229. https://doi.org/10.1016/j.marenvres.2019.01.006

 

#Otte JM, Black­well N, Ru­ser R, Kapp­ler A, Klein­dienst S, Schmidt C (2019) N2O for­ma­ti­on by ni­tri­te-in­du­ced (che­mo)de­ni­tri­fi­ca­ti­on in co­as­tal ma­ri­ne se­di­ment. Scientific Reports 9:10691. doi:10.1038/s41598-019-47172-x

 

Pearl­man JS, Bush­nell M, Cop­po­la L, Buttigieg PL et al (2019) Evol­ving and sustai­ning oce­an best prac­tices and stan­dards for the next de­ca­de. Frontiers in Marine Science 6(277). doi.org/10.3389/fmars.2019.00277

  Purser A, Herr H, Dreut­ter S, Dor­schel B, Glud RN, Hehe­mann L, Hoge U, Ja­mie­son AJ, Lin­ley TD, Ste­wart HA, Wenzhöfer F (2019) De­pres­si­on chains in seaf­loor of con­tras­ting mor­pho­lo­gy, Ata­ca­ma Trench mar­gin. A com­ment on Mar­sh et al. (2018). Royal Society Open Science 6:182053 doi:10.1098/rsos.182053
 

Reint­jes G, *Tegetmeyer HE, Bür­gis­ser M, Or­lic S, Tews I, Zubkov M, Voß D, Zie­lin­ski O, Quast C, Glöck­ner FO, Amann R, Fer­de­l­man TG, Fuchs BM (2019) On-site ana­ly­sis of the bac­te­ri­al com­mu­nities of the Ul­trao­li­go­tro­phic South Pa­ci­fic Gyre. Applied and Environmental Microbiology 85(14):e00184-19.  doi:1128/AEM.00184-19

  *Ruff SE, *Felden J, Gru­ber-Vo­di­cka HR, *Marcon Y, Knit­tel K,*Ramette A, Boetius A (2019) In situ de­ve­lop­ment of a me­tha­notro­phic mi­cro­bio­me in deep-sea se­di­ments. The ISME Journal 13:197–213 doi:10.1038/s41396-018-0263-1
 

Ry­ba­ko­va E, Kre­me­nets­kaia A, Ve­de­nin A, Boetius A, Ge­bruk A (2019) Deep-sea me­ga­bent­hos com­mu­nities of the Eu­ra­si­an Cen­tral Arc­tic are in­flu­en­ced by ice-co­ver and sea-ice al­gal falls. PloS one 14(7) e02110092019. doi:10.1371/journal.pone.0211009

 

Sweet­man AK, Smith CR, Shul­se CN, Mail­lot B, Lindh M, Church MJ, Mey­er KS, van Oeve­len D, #Stratmann T, Goo­day AJ (2019) Key role of bac­te­ria in the short-term cy­cling of car­bon at the abys­sal seaf­loor in a low par­ti­cu­la­te or­ga­nic car­bon flux re­gi­on of the eas­tern Pa­ci­fic Oce­an. Limnology and Oceanography 64:694-713. doi.org/10.1002/lno.11069

 

Stratmann T, So­e­ta­ert K, Wei C-L, Lin Y-S, van Oeve­len D (2019) The SCOC da­ta­ba­se, a lar­ge, open, and glo­bal da­ta­ba­se with se­di­ment com­mu­ni­ty oxy­gen con­sump­ti­on ra­tes. Scientific Data 6: 242. doi.org/10.1038/s41597-019-0259-3

  Var­lie­ro G, Bienhold C, Schmid F, Boetius A, Molari M (2019) Mi­cro­bi­al di­ver­si­ty and con­nec­tivi­ty in deep-sea se­di­ments of the South At­lan­tic Po­lar Front. Frontiers in Microbiology 10:665. doi:10.3389/fmicb.2019.00665
  Wang Y, Wegener G, Hou J, Wang F, Xiao X (2019) Ex­pan­ding an­ae­ro­bic al­ka­ne me­ta­bo­lism in the do­main of Archaea. Na­tu­re Mi­cro­bio­lo­gy 4:595-602 doi:10.1038/​s41564-019-0364-2
  #Wietz M, Lau SC, Har­der T (2019) Edi­to­ri­al: So­cio-Eco­lo­gy of Mi­cro­bes in a Chan­ging Oce­an. Frontiers in Marine Science 6:190. doi:10.3389/fmars.2019.00190
  Yang T, Tes­ke A, Am­bro­se W, #Salman-Carvalho V, Ba­gnell R, Niel­sen LP (2019) In­tra­cel­lu­lar cal­ci­te and sul­fur dy­na­mics of Achromatiumcells ob­ser­ved in a lab-ba­sed en­rich­ment and ae­ro­bic in­cu­ba­ti­on ex­pe­ri­ment. Antonie van Leeuwenhoek 112(2):263-274. doi:10.1007/s10482-018-1153-2
 

Ve­de­nin A, Gus­ky M, Ge­bruk A, Kre­me­nets­kaia A, Ry­ba­ko­va E, Boetius A (2018) Spa­ti­al dis­tri­bu­ti­on of bent­hic ma­cro­fau­na in the Cen­tral Arc­tic Oce­an. PLOS ONE 13(10) e0200121. doi:10.1371/journal.pone.0200121.

 

2018

Bra­eck­man U, Janssen F, La­vik G, El­vert M, Mar­chant H, Buck­ner C, Bienhold C, Wenzhöfer F (2018) Car­bon and ni­tro­gen tur­no­ver in the Arc­tic deep sea: in situ bent­hic com­mu­ni­ty re­s­pon­se to dia­tom and coc­co­li­tho­pho­rid phy­to­de­t­ri­tus. Biogeosciences 15(21):6537-6557. doi:10.5194/bg-15-6537-2018

 

Bryce C, Black­well N, Schmidt C, #Otte J, Huang Y, Klein­dienst S, To­mas­zew­ski E, Schad M, War­ter V, Peng C, Byr­ne JM, Kapp­ler A (2018) Mi­cro­bi­al an­ae­ro­bic Fe(II) oxi­da­ti­on – eco­lo­gy, me­cha­nisms and en­vi­ron­men­tal im­pli­ca­ti­ons. Environmental Microbiology 20(10):3462-3483. doi:10.1111/1462-2920.14328

  Boetius A, Ha­eckel M (2018) Mind the seaf­loor. Science 359:34-36. doi:10.1126/science.aap7301
  Buttigieg PL, Fadeev E, Bienhold C, Hehe­mann L, *Offre P, Boetius A (2018) Ma­ri­ne mi­cro­bes in 4D – using time se­ries ob­ser­va­ti­on to as­sess the dy­na­mics of the oce­an mi­cro­bio­me and its links to oce­an health. Current Opinion in Microbiology 43:169–185. doi:10.1016/j.mib.2018.01.015
  Cha­fee M, Fernàn­dez-Gu­er­ra A, Buttigieg PL, Gerdts G, Eren AM, Tee­ling H, Amann RI (2018) Re­cur­rent pat­terns of mi­cro­di­ver­si­ty in a tem­pe­ra­te co­as­tal ma­ri­ne en­vi­ron­ment. The ISME Journal 12:237–252. doi:10.1038/ismej.2017.165
  Fadeev E, Sal­ter I, Schou­rup-Kris­ten­sen V, Nö­thig E-M, Met­fies K, En­gel A, Piontek J, Boetius A, Bienhold C (2018) Mi­cro­bi­al com­mu­nities in the east and west Fram Strait du­ring sea ice mel­ting sea­son. Frontiers in Marine Science 5:429. doi:10.3389/fmars.2018.00429
  Hoffmann R, Bra­eck­man U, Hase­mann C, Wenzhöfer F (2018) Deep-sea bent­hic com­mu­nities and oxy­gen flu­xes in the Arc­tic Fram Strait con­trol­led by sea-ice co­ver and wa­ter depth. Biogeosciences 15:4849-4869 doi:10.5194/bg-2017-537
  *Hoffmann R, Pa­sot­ti F, Vaz­quez S, Le­fai­ble N, Tors­tens­son A, Mac­Cor­mack W, Wenzhöfer F, Bra­eck­man U (2018) Spa­ti­al va­ria­bi­li­ty of bio­geo­che­mis­try in shal­low co­as­tal bent­hic com­mu­nities of Pot­ter Cove (Ant­arc­tica) and the im­pact of a mel­ting gla­cier. PLoS ONE 13(12):e0207917. doi:10.1371/journal.pone.0207917
  *Krukenberg V, Rie­del D,Gru­ber-Vo­di­cka HR, Buttigieg PL, Tegetmeyer HE, Boetius A, Wegener G (2018) Gene ex­pres­si­on and ul­tra­struc­tu­re of meso- and ther­mo­phi­lic me­tha­notro­phic con­sor­tia. Environmental Microbiology 20(5):1651-1666.  doi:10.1111/1462-2920.14077
  Laso-Pérez R, *Krukenberg V, Musat F, Wegener G (2018) Es­ta­blis­hing an­ae­ro­bic hy­dro­c­ar­bon-de­gra­ding en­rich­ment cul­tu­res un­der strict­ly an­oxic con­di­ti­ons. Nature Protocols 13(6):1310-1330. doi:10.1038/nprot.2018.030
  Luo M, Glud RN, Pan B, Wenzhöfer F,  Xu Y, Lin G, Chen D (2018) Bent­hic car­bon mi­ne­ra­liza­t­i­on in ha­dal tren­ches: In­sights from in-situ de­ter­mi­na­ti­on of bent­hic oxy­gen con­sump­ti­on. Geophysical Research Letters 45:2752-2760. doi:10.1002/2017GL076232
  Mar­chant HK, Tegetmeyer HE, Ah­mer­kamp S, Hol­tap­pels M, La­vik G, Graf J, Schrei­ber F, Muss­mann M, Strous M, Kuy­pers MMM (2018) Me­ta­bo­lic spe­cia­liza­t­i­on of de­ni­tri­fiers in per­me­able se­di­ments con­trols N2O emis­si­ons. Environmental Microbiology 20(12):4486-4502. doi:10.1111/1462-2920.14385
  Mar­ti­jn J, Vos­se­berg J, Guy L, *Offre P, Et­te­ma TJG (2018) Deep mi­to­chon­dri­al ori­gin outs­ide the sam­p­led al­pha­pro­te­ob­ac­te­ria. Nature 557:101–105. doi:10.1038/s41586-018-0059-5
 

Molari M, Gui­li­ni K., Lott C., We­ber M., de Beer D., Mey­er S., *Ramette A, Wegener G, Wenzhöfer F, Mar­tin D, Ci­bic T, De Vit­tor C, Van­reu­sel A, Boetius A (2018) CO2 le­a­ka­ge al­ters bio­geo­che­mi­cal and eco­lo­gi­cal func­tions of sub­ma­ri­ne sands. Science Advances 4(2):eaao2040. doi:1126/​sci­adv.aao2040

 

#Otte JM, Soos V, Rug­höft S, Ma­isch M, Kapp­ler K, Klein­dienst S, Schmidt C (2018) Ste­ri­liza­t­i­on im­pacts on ma­ri­ne se­di­ment - Are we able to in­ac­tiva­te mi­cro­or­ga­nisms in en­vi­ron­men­tal sam­ples? FEMS Microbial Ecology 94(12):fiy189. doi:10.1093/femsec/fiy189

 

#Pala C, #Molari M, Niz­zo­li D, Bar­to­li M, Vi­a­ro­li P, Ma­ni­ni E (2018) En­vi­ron­men­tal dri­vers con­trol­ling bac­te­ri­al and ar­chae­al ab­un­dance in the se­di­ments of a Me­di­ter­ra­ne­an la­goon eco­sys­tem. Current Microbiology 75:1147–1155. doi:10.1007/s00284-018-1503-3

 

Rapp JZ, *Fernandez-Mendez M, Bienhold C, Boetius A (2018) Ef­fects of ice-al­gal ag­gre­ga­te ex­port on the con­nec­tivi­ty of bac­te­ri­al com­mu­nities in the cen­tral Arc­tic Oce­an. Frontiers in Microbiology 9:1035. doi:10.3389/fmicb.2018.01035

 

Schut­te C, Tes­ke A, MacG­re­gor B, Salman-Carvalho V, La­vik G, Hach P, de Beer D (2018) Fil­amen­tous gi­ant Beggiatoaceae from Gu­ay­mas Ba­sin are ca­pa­ble of both de­ni­tri­fi­ca­ti­on and dis­si­mi­la­to­ry ni­tra­te re­duc­tion to am­mo­ni­um (DNRA). Applied and Environmental Microbiology 84(15):e0286017 doi:10.1128/​AEM.02860-17

 

Ve­de­nin A, Gus­ky M, Ge­bruk A, Kre­me­nets­kaia A, Ry­ba­ko­va E, Boetius A (2018) Spa­ti­al dis­tri­bu­ti­on of bent­hic ma­cro­fau­na in the Cen­tral Arc­tic Oce­an. PLoS ONE 13(10):e0200121. doi:10.1371/journal.pone.0200121

 

2017 

Ah­mer­kamp S, Win­ter C, Krä­mer K, de Beer D, Janssen F, Fried­rich J, Kuy­pers MMM, Hol­tap­pels M (2017) Re­gu­la­ti­on of bent­hic oxy­gen flu­xes in per­me­able se­di­ments of the co­as­tal oce­an. Limnology and Oceanography 62:1935–1954. doi:10.1002/lno.10544

 

Avcı B, Hahn­ke R, Cha­fee M, Fi­scher T, Gru­ber-Vo­di­cka H, #Tegetmeyer HE, Har­der J, Fuchs BM, Amann RI, Tee­ling H (2017) Ge­no­mic and phy­sio­lo­gi­cal ana­ly­ses of Reinekea forsetii re­veal a ver­sa­ti­le op­por­tu­nis­tic life­style du­ring spring al­gae blooms. Environmental Microbiology 19(3):1209–1221. doi:1111/1462-2920.13646.

 

Chen J, Han­ke A, #Tegetmeyer HE, Kat­tel­mann I, Shar­ma R, Ha­mann E, Hargs­hei­mer T, Kraft B, Lenk S, Ge­el­ho­ed JS, Het­tich RL, Strous M (2017) Im­pacts of che­mi­cal gra­di­ents on mi­cro­bi­al com­mu­ni­ty struc­tu­re.e The ISME Journal 11:920–931. doi:10.1038/ismej.2016.175.

 

*Donis D, Janssen F, Liu B, Wenzhöfer F, Dell­wig O, Escher P, Spit­zy A, Bött­cher ME (2017) Bio­geo­che­mi­cal im­pact of sub­ma­ri­ne ground wa­ter di­sch­ar­ge on co­as­tal sur­face sands of the sou­thern Bal­tic Sea. Estuarine, Coastal and Shelf Science 189(131). doi:10.1016/j.ecss.2017.03.003

 

Gui­li­ni K, We­ber M, de Beer D, Schnei­der M, Molari M, Lott C, Bod­nar W, Mas­cart T, De Troch M, Van­reu­sel A (2017) Re­s­pon­se of Posidonia oceanica se­agrass and its epi­bi­ont com­mu­nities to oce­an aci­di­fi­ca­ti­on. PLoS One 12(8):e0181531. doi:1371/journal.pone.0181531

 

Ha­mann E, #Tegetmeyer HE, Rie­del D, Litt­mann S, Ah­mer­kamp S, Chen J, Hach P, Strous M (2017) Syn­tro­phic linka­ges bet­ween pre­da­to­ry Car­pe­die­mo­nas and spe­ci­fic pro­ka­ryo­tic po­pu­la­ti­ons. The ISME Journal 11:1205–1217. doi:10.1038/ismej.2016.197.

 

*Hassenrück C, Tegetmeyer HE, *Ramette A, Fa­bri­ci­us K (2017) Mi­nor im­pacts of re­du­ced pH on bac­te­ri­al bio­films on set­t­le­ment ti­les along na­tu­ral pH gra­di­ents at two CO2 seeps in Pa­pua New Gui­nea. ICES Journal of Marine Science 74(4):978-987. doi:10.1093/icesjms/fsw204.

 

Hoff­man K., *Has­sen­rück C., Sal­man-Car­val­ho V., Holtappels M., Bi­en­hold C. (2017) Re­s­pon­se of bac­te­ri­al com­mu­nities to dif­fe­rent de­t­ri­tus com­po­si­ti­ons in Ar­tic deep-sea se­di­ments. Fron­tiers in Mi­cro­bio­lo­gy 8:266. doi:103389/fmicb.2017.0026

  *Jes­sen G. L., *Licht­schlag A., *Ra­met­te A., Pantoja S., Ros­sel P.E., Schubert C.J., Struck U., Boe­ti­us A. (2017) Hy­po­xia cau­ses pre­ser­va­ti­on of la­bi­le or­ga­nic mat­ter and chan­ges mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on (Black Sea shelf) Sci­ence Ad­van­ces 3(2): e1601897. doi:10.1126/sciadv.1601897
 

Jousset A., Bi­en­hold C., Chatzinotas A., Gallien L., *Go­bet A., Kurm V., Küsel K., Rillig M.C., Rivett D.W., Salles J.F., van der Heijden M.G.A., Youssef N.H., Zhang X.W., Weil Z., Hol W.H.G. (2017) Whe­re less may be more: How the rare bio­s­phe­re pulls eco­sys­tems strings. The ISME Jour­nal 11, 853–862. doi:10.1038/ismej.2016.174.

 

Kegler P., Kegler H.F., Gärdes A., Ferse S.C.A., Lukman M., Alfiansah Y.R., *Has­sen­rück C., Kunzmann A. (2017) Bac­te­ri­al Bio­film Com­mu­nities and Co­ral Lar­vae Set­t­le­ment at Dif­fe­rent Le­vels of An­thro­po­ge­nic Im­pact in the Sper­mon­de Ar­chi­pel­ago, In­do­ne­sia. Fron­tiers in Ma­ri­ne Sci­ence 4, 270. doi:10.3389/fmars.2017.00270

 

Kegler H.F., Lukman M., Teichberg M., Plass-Johnson J., *Has­sen­rück C., Wild C., Gärdes A. (2017) Bac­te­ri­al Com­mu­ni­ty Com­po­si­ti­on and Po­ten­ti­al Dri­ving Fac­tors in Dif­fe­rent Reef Ha­bi­tats of the Sper­mon­de Ar­chi­pel­ago, In­do­ne­sia. Fron­tiers in Mi­cro­bio­lo­gy 8, 662. doi:10.3389/fmicb.2017.00662

 

*Koop-Ja­kob­sen K., *Fi­scher J., Wenz­hö­fer F. (2017) Sur­vey of se­di­ment oxy­ge­na­ti­on in rhi­zo­s­phe­res of the salt­mar­sh grass - Spar­ti­na an­gli­ca. Sci­ence of the To­tal En­vi­ron­ment 589, 191–199. doi:10.1016/j.scitotenv.2017.02.147.

 

Marchant H.K., Ahmerkamp S., Lavik G., Te­get­mey­er H.E., Graf J., Klatt M., Holtappels M., Walpersdorf E., Kuypers M.M.M. (2017) De­ni­tri­fy­ing com­mu­ni­ty in co­as­tal se­di­ments per­forms ae­ro­bic and an­ae­ro­bic re­spi­ra­ti­on si­mul­ta­neous­ly. The ISME Jour­nal 11, 1799-1812. doi:10.1038/ismej.2017.51

  *Pop Ris­to­va P., Bi­en­hold C., Wenz­hö­fer F., Ros­sel P.E., Boe­ti­us A. (2017) Tem­po­ral and spa­ti­al va­ria­ti­ons of bac­te­ri­al and fau­nal com­mu­nities as­so­cia­ted with deep-sea wood falls. PloS one 12(1): e0169906. doi:10.1371/journal.pone.0169906
 

Probandt D., Knittel K., Te­get­mey­er H.E., Ahmerkamp S., Holtappels M., Amann R. (2017) Per­me­a­bi­li­ty shapes bac­te­ri­al com­mu­nities in sub­lit­to­ral sur­face se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy 19: 1584–1599. doi:10.1111/1462-2920.13676

  #Ros­sel, P. E., Stubbins, A., Rebling, T., Koschinsky, A., Hawkes, J.A., Dittmar, T. (2017) Ther­mal­ly al­te­red ma­ri­ne dis­sol­ved or­ga­nic mat­ter in hydro­ther­mal fluids. Or­ga­nic geo­che­mis­try 110:73-86  doi.org/10.1016/j.orggeochem.2017.05.003
  Saad S., Bhatnagar S., #Te­get­mey­er H.E., Geelhoed J.S., Strous M., *Ruff S.E. (2017) Tran­si­ent ex­po­sure to oxy­gen or ni­tra­te re­veals eco­phy­sio­lo­gy of fer­men­ta­ti­ve and sul­fa­te-re­du­cing bent­hic mi­cro­bi­al po­pu­la­ti­ons. En­vi­ron­men­tal Mi­cro­bio­lo­gy 19, 4866–4881. doi:10.1111/1462-2920.1389
 

Schramke H., Laermann V., #Te­get­mey­er H.E., Brachman A., Jung K., Altendorf K.W. (2017) Re­vi­sit­ing re­gu­la­ti­on of po­tas­si­um ho­me­o­stasis in Escherichia coli: the con­nec­tion to phos­pha­te li­mi­ta­ti­on. Mi­cro­bio­lo­gyO­pen 6:e438. doi:10.1002/mbo3.438.

 

Stec K.F., Caputi L., But­ti­gieg P.L., D'Alelio D., Ibarbalz F.M., Sullivan M.B., Chaffron S., Bowler C., d'Alcala' M.R., Iudicone D. (2017) Mo­de­ling plank­ton in­ter­ac­tions in the meta-omics era. Are we re­a­dy? Ma­ri­ne Ge­no­mics 32: 1-17. doi:10.1016/j.margen.2017.02.006

 

Wilbanks EG, #Sal­man-Car­val­ho V, Jaekel U, Humphrey PT, Eisen JA, Buckley DH, Zinder SH (2017) The green ber­ry con­sor­tia of the Sip­pe­wis­sett salt mar­sh: mil­li­me­ter-si­zed ag­gre­ga­tes of diaz­o­tro­phic unicel­lu­lar cya­no­bac­te­ria. Fron­tiers in Mi­cro­bio­lo­gy 8:1623 doi:10.3389/fmicb.2017.01623.

 

2016

Bayer B., Vojvoda J., Off­re P., Alves R.J.E., Elisabeth N., Garcia J.A., Volland J.-M., Srivastava A., Schleper C., Herndl G.J. (2016) Phy­sio­lo­gi­cal and ge­no­mic cha­rac­te­riza­t­i­on of two no­vel ma­ri­ne thau­m­ar­chae­al strains in­di­ca­tes ni­che dif­fe­ren­tia­ti­on. ISME Jour­nal 10, 1051–1063. doi:10.1038/ismej.2015.200.

 

Bienhold C., *Zinger L., Boetius A., *Ramette A. (2016) Di­ver­si­ty and bio­geo­gra­phy of ba­thy­al and abys­sal seaf­loor bac­te­ria. PLOS ONE 11(1): e0148016. doi:1371/journal.pone.0148016.

 

Buttigieg P.L., Pafilis E., Lewis S.E., Schildhauer M.P., Walls R.L., Mungall C.J. (2016) The en­vi­ron­ment on­to­lo­gy in 2016: bridging do­mains with in­crea­sed scope, se­man­tic den­si­ty, and in­ter­ope­ra­ti­on. Jour­nal of Bio­me­di­cal Se­man­ti­cs 7(1): 57. doi:10.1186/s13326-016-0097-6

 

Danovaro R., Mo­la­ri M., Corinaldesi C., Dell´Anno A. (2016) Ma­cro­eco­lo­gi­cal dri­vers of Ar­chaea and Bac­te­ria in bent­hic deep-sea eco­sys­tems. Sci­ence Ad­van­ces 2(4): e1500961. doi:10.1126/sciadv.1500961

 

*Do­nis D., McGinnis F., Holtappels M., *Fel­den J., Wenz­hö­fer F. (2016). As­ses­sing bent­hic oxy­gen flu­xes in oli­go­tro­phic deep sea se­di­ments (HAUS­GAR­TEN ob­ser­va­to­ry). Deep Sea Re­se­arch I. 111: 1-10. doi:10.1016/j.dsr.2015.11.007.

 

Dowell F., Cardman Z., Dasarathy S., Kellermann M., Lipp J. S., *Ruff S. E., Biddle J. F., McKay L., MacGregor B. J., Lloyd K. G., Albert D. B., Mendlovitz H., Hinrichs K.-U., Teske A. (2016). Mi­cro­bi­al com­mu­nities in me­tha­ne- and short chain al­ka­ne-rich hydro­ther­mal se­di­ments of Gu­ay­mas Ba­sin. Fron­tiers in Mi­cro­bio­lo­gy 7: 17. doi:10.3389/fmicb.2016.00017.

 

Dyksma S., Bischof K., Fuchs B.M., Hoff­mann K., Meier D., Meyerdierks A., Pjevac P., Probandt D., Richter M., Stepanauskas R., Mußmann M. (2016) Ubi­qui­tous Gam­ma­pro­te­ob­ac­te­ria do­mi­na­te dark car­bon fixa­ti­on in co­as­tal se­di­ments. The ISME Jour­nal 10: 1939-1953doi:10.1038/ismej.2015.257.

 

#Fa­deev E., De Pascale F., Vezzi A., Hubner S., Aharonovich D., Sher D. (2016). Why Clo­se a Bac­te­ri­al Ge­no­me? The Plas­mid of Alteromonas macleodii HO­T1A3 is a Vec­tor for In­ter-Spe­ci­fic Trans­fer of a Fle­xi­ble Ge­no­mic Is­land. Fron­tiers in Mi­cro­bio­lo­gy 7:248. doi:10.3389/fmicb.2016.00248.

 

*Fernán­dez-Mén­dez M., Turk-Kubo K. A., Rapp J. Z., But­ti­gieg P. L., Krumpen T., Zehr J. P., Boe­ti­us A. (2016) Diaz­o­troph di­ver­si­ty in the sea ice, melt ponds and wa­ter co­lumn of the Cen­tral Arc­tic Oce­an. Fron­tiers in Aqua­tic Mi­cro­bio­lo­gy 7:1884 doi:10.3389/fmicb.2016.01884.

 

Hanke A., Berg J., Hargesheimer T., Tegetmeyer H.E., Sharp C., Strous M. (2016). Selec­tive pres­su­re of tem­pe­ra­tu­re on com­pe­ti­ti­on and cross-fee­ding wi­t­hin de­ni­tri­fy­ing and fer­men­ta­ti­ve mi­cro­bi­al com­mu­nities. Fron­tiers in Mi­cro­bio­lo­gy 6:1461. doi:10.3389/fmicb.2015.01461.

 

Has­sen­rück C., Fink A., *Licht­schlag A., Te­get­mey­er H., De Beer D., *Ra­met­te A. (2016) Quan­ti­fi­ca­ti­on of the ef­fects of oce­an aci­di­fi­ca­ti­on on se­di­ment mi­cro­bi­al com­mu­nities in the en­vi­ron­ment: the im­port­an­ce of eco­sys­tem ap­proa­ches. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 92(5): fi­w027. doi:10.1093/femsec/fiw027.

 

ten Hoopen P., Amid C., But­ti­gieg P. L., Pafilis E., Bravakos P., Cerdeño-Tárraga A. M., Gibson R., Kahlke T., Legaki A., Kada N. M., Papastefanou G., Pereira E., Rossello M., Toribio A. L., Cochrane G. (2016). Va­lue, but high costs in post-de­po­si­ti­on data cu­ra­ti­on. Da­ta­ba­se. ba­v126. doi:1093/database/bav126.

 

Jessen G. L., *Licht­schlag, A., Struck, U., Boe­ti­us A. (2016) Dis­tri­bu­ti­on and com­po­si­ti­on of thio­tro­phic mats in the hy­po­xic zone of the Black Sea (150-170m wa­ter depth, Cri­mea mar­gin). Fron­tiers in Mi­cro­bio­lo­gy 7:1011. doi:3389/fmicb.2016.01011

  Kellermann M.Y., Yoshinaga M.Y., We­ge­ner G., Kru­ken­berg V., Hinrichs K.-U. (2016) Tra­c­ing the pro­duc­tion and fate of in­di­vi­du­al ar­chae­al in­tact po­lar li­pids by sta­ble iso­to­pe pro­bing, Or­ga­nic Geo­che­mis­try 95:13-20. doi:10.1016/j.orggeochem.2016.02.004.
 

Kerou M., Off­re P., Valledor L., Abby S., Melcher M., Nagler M., Weckwerth W., Schleper C. (2016) Pro­teo­mics and com­pa­ra­ti­ve ge­no­mics of Nitrososphaera viennensis re­veal the core ge­no­me and ad­ap­ta­ti­ons of ter­restri­al ar­chae­al am­mo­nia-oxi­di­zers. PNAS 201601212. doi:10.1073/pnas.1601212113.

 

Koureas D, Hardisty A, Vos R, Agosti D, Arvanitidis C, Bogatencov P, But­ti­gieg P.L., de Jong Y, Horvath F, Gkoutos G, Groom Q, Kliment T, Kõljalg U, Manakos I, Marcer A, Marhold K, Morse D, Mergen P, Penev L, Pettersson L, Svenning J, van de Putte A, Smith V (2016) Uni­fy­ing Eu­ro­pean Bio­di­ver­si­ty In­for­ma­tics (BioUni­fy). Re­se­arch Ide­as and Out­co­mes 2: e7787. doi:10.3897/rio.2.e7787

 

Krukenberg V., *Har­ding K., Richter M., Glöckner F.-O., Gruber Vodicka H., Adam B., Berg J., Knittel K., Te­get­mey­er H.E., Boe­ti­us A., We­ge­ner G. (2016) Can­di­da­tus Des­ul­fo­fer­vi­dus au­xi­l­ii, a hy­dro­ge­notro­phic sul­fa­te-re­du­cing bac­te­ri­um in­vol­ved in the ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne. En­vi­ron­men­tal Mi­cro­bio­lo­gy 18:3073-3091. doi:1111/1462-2920.13283.

 

Laso-Pé­rez R., We­ge­ner G., Knittel K., Widdel F., *Har­ding K. J., Kru­ken­berg V., Meier D. V., Richter M., Te­get­mey­er H. E., Riedel D., Richnow H.-H., Adrian L., Thorsten R., Lechtenfeld O., Musat F. (2016) Ther­mo­phi­lic ar­chaea ac­tiva­te bu­ta­ne via al­kyl-CoM for­ma­ti­on. Na­tu­re 539(7629): 396-401. doi:10.1038/nature20152.

  Leduc D., Rowden A., Glud R.N., Wenz­hö­fer F., Kitazato H., Clark M. (2016) Com­pa­ri­son bet­ween in­fau­nal com­mu­nities of the deep floor and edge of the Ton­ga Trench: pos­si­ble ef­fects of dif­fe­ren­ces in or­ga­nic mat­ter sup­p­ly. Deep Sea Re­se­arch I 116: 264-275. doi:10.1016/j.dsr.2015.11.003.
  Pafilis E., But­ti­gieg P. L., Ferrel B.l, Pereira E., *Schnet­zer J., Arvanitidis C., Jensen L. J. (2016). EXTRACT: In­ter­ac­tive extrac­tion of en­vi­ron­ment me­ta­da­ta and term sug­ges­ti­on for me­ta­ge­no­mic samp­le an­no­ta­ti­on. Da­ta­ba­se: the jour­nal of bio­lo­gi­cal da­ta­ba­ses and cu­ra­ti­on, 2016. doi:10.1093/database/baw005.
  Purser A., Mar­con Y, Hoving HJ, Vecchione M, Piatkowski U, Eason D, Bluhm H, Boe­ti­us A (2016) As­so­cia­ti­on of deep-sea in­cir­ra­te oc­to­pods with man­ga­ne­se-crusts and no­du­le fiel­ds in the Pa­ci­fic Oce­an. Cur­rent Bio­lo­gy 26, Is­sue 24: R1268–R1269. doi:10.1016/j.cub.2016.10.052
 

RocaMartí, M., Puigcorbé,V., Rutgers van der Loeff, M.M., Katlein, C., *Fernán­dezMéndez, M., Peeken, I., Masqué, P. (2016) Car­bon ex­port flu­xes and ex­port ef­fi­ci­en­cy in the cen­tral Arc­tic du­ring the re­cord sea‐ice mi­ni­mum in 2012: a joint 234Th/​238U and 210­Po/​210Pb stu­dy. Jour­nal of Geo­phy­si­cal Re­se­arch: Oce­ans. 121(7): 5030-5049. doi:10.1002/​2016JC011816.

 

Rossel P.E., Bienhold C., Boetius A., Dittmar T. (2016) Dis­sol­ved or­ga­nic mat­ter in pore wa­ter of Arc­tic Oce­an se­di­ments: in­flu­ence of the en­vi­ron­ment on the mole­cu­lar com­po­si­ti­on. Or­ga­nic Geo­che­mis­try 97: 41-52. doi:1016/j.orggeochem.2016.04.003.

 

*Ruff S.E., Kuhfuss H., We­ge­ner G., Lott C., *Ra­met­te A., Wiedling J., Knittel K., *We­ber M. (2016) Me­tha­ne seep in shal­low-wa­ter per­me­able se­di­ment har­bors high di­ver­si­ty of an­ae­ro­bic me­tha­notro­phic com­mu­nities, Elba, Ita­ly. Fron­tiers in Mi­cro­bio­lo­gy 7:374. doi:3389/fmicb.2016.00374.

 

Sahling H., Borowski C., Escobar-Briones E., Gaytán-Caballero A., Hsu C.-W., Loher M., MacDonald I., Marcon Y., Pape T., Römer M., Rubin-Blum M., Schubotz F., Smrzka D., We­ge­ner G., Bohrmann G. (2016) Mas­si­ve asphalt de­po­sits, oil see­page, and gas ven­ting sup­port ab­un­dant che­mo­syn­the­tic com­mu­nities at the Cam­pe­che Knolls, sou­thern Gulf of Me­xi­co. Bio­geo­sci­en­ces 13: 4491-4512. doi:10.5194/bg-13-4491-2016.

 

#Sal­man, V., Berben, T., Bowers, R. M., Woyke, T., Teske, A., & Angert, E. R. (2016). In­sights into the sin­gle cell draft ge­no­me of “Candidatus Ach­ro­ma­ti­um pa­lust­re”. Stan­dards in ge­no­mic sci­en­ces, 11(1): 1. doi:10.1186/s40793-016-0146-x.

  Salman-Carvalho V., Fadeev E., Joye S., Teske A. (2016) How clo­nal is clo­nal? Ge­no­me plas­ti­ci­ty across mul­ti­cel­lu­lar seg­ments of a "Candidatus Ma­ri­thrix sp." fil­ament from sul­fi­dic, bri­ny seaf­loor se­di­ments in the Gulf of Me­xi­co. Fron­tiers in Mi­cro­bio­lo­gy 7: 1173. doi:3389/fmicb.2016.01173.
  *Schnet­zer J., Kopf A., Bietz M. J., But­ti­gieg P. L., Fernandez-Guerra A., *Pop Ris­to­va P., Glöckner F. O., Kottmann R. (2016). My­OSD 2014: Eva­lua­ting ocea­no­gra­phic mea­su­re­ments cont­ri­bu­ted by ci­ti­zen sci­en­tists in sup­port of Oce­an Sam­pling Day. Jour­nal of Mi­cro­bio­lo­gy & Bio­lo­gy Edu­ca­ti­on 17(1): 163. doi:1128/jmbe.v17i1.1001.
 

Sen A., Ondréas H., Gaillot A., Mar­con Y., Augustin J.M., Olu K. (2016) The use of mul­ti­beam back­scat­ter and ba­thy­me­try as a me­ans of iden­ti­fy­ing fau­nal as­sem­bla­ges in a deep-sea cold seep. Deep Sea Re­se­arch Part I: Ocea­no­gra­phic Re­se­arch Pa­pers 110: 33-49. doi:10.1016/j.dsr.2016.01.005.

 

Soltwedel T., Bauerfeind E., Bergmann M., Bracher A., Budaeva N., Busch K., Cherkasheva A., Fahl K., Grzelak K., Hasemann C., Ja­cob M., Kraft A., Lalande C., Metfies K., Nöthig E.M., Meyer K., Quéric N.V., Schewe I., Wlodarska-Kowalczuk M., Klages M. (2016) Na­tu­ral va­ria­bi­li­ty or an­thro­po­ge­ni­cal­ly-in­du­ced va­ria­ti­on? In­sights from 15 ye­ars of mul­ti­di­sci­pli­na­ry ob­ser­va­tions at the arc­tic open-oce­an LTER site HAUS­GAR­TEN. Eco­lo­gi­cal In­di­ca­tors 65: 89-102. doi:10.1016/j.ecolind.2015.10.001.

 

#Von­nah­me, T. R., Devetter, M., Žárský, J. D., Šabacká, M., & Elster, J. (2016). Con­trols on mi­cro­al­gal com­mu­ni­ty struc­tu­res in cryo­co­ni­te ho­les upon high-Arc­tic gla­ciers, Sval­bard. Bio­geo­sci­en­ces 13(3): 659-674. doi:10.5194/bg-13-659-2016.

 

We­ge­ner G., Kellermann M.Y., Elvert M. (2016) Tracking ac­tivi­ty and func­tion of mi­cro­or­ga­nisms by sta­ble iso­to­pe pro­bing of mem­bra­ne li­pids (in­vi­ted re­view). Cur­rent opi­ni­on in bio­tech­no­lo­gy 41: 43-52. doi:1016/j.copbio.2016.04.022

 

Wegener G., Krukenberg V., *Ruff S.E., Kellermann M.Y., Knittel K. (2016). Me­ta­bo­lic ca­pa­bi­li­ties of mi­cro­or­ga­nisms in­vol­ved in and as­so­cia­ted with the an­ae­ro­bic oxi­da­ti­on of me­tha­ne. Fron­tiers in Mi­cro­bio­lo­gy 7:46. doi:10.3389/fmicb.2016.00046.

 

Wenzhöfer F., Kazumasa O., Middelboe M., Turnewitsch R., Toyofuku T., Kitazato H., Glud R.N. (2016) Bent­hic car­bon mi­ne­ra­liza­t­i­on in ha­dal tren­ches: As­sess­ment by in situ O2 mi­cro­pro­fi­le mea­su­re­ments. Deep Sea Re­se­arch I 116: 276-286. doi:10.1016/j.dsr.2016.08.013.

 

Winkel, M., #Sal­man-Car­val­ho, V., Woyke, T., Richter, M., Schulz-Vogt, H. N., Flood, B., Bailey, J. V., Mußmann, M. (2016) Sin­gle-cell se­quen­cing of Thio­mar­ga­ri­ta re­veals ge­no­mic fle­xi­bi­li­ty for ad­ap­ta­ti­on to dy­na­mic re­dox con­di­ti­ons. Fron­tiers in Mi­cro­bio­lo­gy 7: 964. doi:3389/fmicb.2016.00964.

 

Yilmaz P., Yarza P., Rapp J.Z., Glöckner F.O. (2016). Ex­pan­ding the World of Ma­ri­ne Bac­te­ri­al and Ar­chae­al Cla­des. Fron­tiers in Mi­cro­bio­lo­gy 6:1524. doi:10.3389/fmicb.2015.01524.

  Zawierucha, K., Ostrowska, M., #Von­nah­me, T.R., Devetter, A.M., Nawrot, P., Lehmann, S., Kolicka, M. (2016). Di­ver­si­ty and dis­tri­bu­ti­on of Tar­di­gra­da in Arc­tic cryo­co­ni­te ho­les. Jour­nal of Lim­no­lo­gy 75(3). doi:10.4081/​jlim­nol.2016.1453.

 

2015 

Ahmerkamp S., Winter C., Jans­sen F., Kuypers M.M.M., Holtappels M. (2015) The im­pact of bed­form mi­gra­ti­on on bent­hic oxy­gen flu­xes. Jour­nal of Geo­phy­si­cal Re­se­arch: Bio­geo­sci­en­ces 120: 2229–2242. doi:10.1002/2015JG00310.

 

Bayer B., Vojvoda J., #Off­re P., Alves R.J.E., Elisabeth N., Garcia J.A., Volland J.-M., Srivastava A., Schleper C., Herndl G.J. (2016) Phy­sio­lo­gi­cal and ge­no­mic cha­rac­te­riza­t­i­on of two no­vel ma­ri­ne thau­m­ar­chae­al strains in­di­ca­tes ni­che dif­fe­ren­tia­ti­on. ISME Jour­nal 10, 1051–1063. doi:10.1038/ismej.2015.200.

  Boe­ti­us A., Anesio A.M., Deming J.W., Mikucki J., Rapp J.Z. (2015) Mi­cro­bi­al eco­lo­gy of the cryo­s­phe­re: sea ice and gla­ci­al ha­bi­tats. Na­tu­re Re­views Mi­cro­bio­lo­gy 13:677–690. doi:10.1038/nrmicro3522.
  Brocke H.J., Wenz­hö­fer F., de Beer D., Mueller B., van Duyl F.C., Nugues M.N. (2015) High dis­sol­ved or­ga­nic car­bon re­lease by bent­hic cya­no­bac­te­ri­al mats in a Ca­rib­be­an reef eco­sys­tem. Sci­en­ti­fic Re­ports 5: 8852. doi:10.1038/srep08852.
  But­ti­gieg P.L., *Ra­met­te A. (2015) Bio­geo­gra­phic pat­terns of bac­te­ri­al mi­cro­di­ver­si­ty in Arc­tic deep-sea se­di­ments (Haus­gar­ten, Fram Strait). Fron­tiers in Mi­cro­bio­lo­gy 5: 660. doi:10.3389/fmicb.2014.00660.
  Degen R., Vedenin A., Gusky M., Boe­ti­us A., Brey T. (2015) Pat­terns and trends of ma­cro­bent­hic ab­un­dance, bio­mass and pro­duc­tion in the deep Arc­tic Oce­an. Po­lar Re­se­arch 34: 24008. doi:10.3402/polar.v34.24008.
  *Do­nis D., Holtappels M., Noss C., Cathalot C., Hancke K., Polsenaere P., Lorke A., Glud R.N., Wenz­hö­fer F., Meysman F.J.R., McGinnis D.F. (2015) An as­sess­ment of the pre­ci­si­on and con­fi­dence of aqua­tic eddy cor­re­la­ti­on. Jour­nal of At­mo­s­phe­ric and Ocea­nic Tech­no­lo­gy 32: 642-655. doi:10.1175/JTECH-D-14-00089.1.
  Fernán­dez-Mén­dez M., Katlein C., Rabe B., Nicolaus M., Peeken I., Bakker K., Flores H., Boe­ti­us A. (2015) Pho­to­syn­the­tic pro­duc­tion in the cen­tral Arc­tic Oce­an du­ring the re­cord sea-ice mi­ni­mum in 2012. Bio­geo­sci­en­ces 12: 3525-3549. doi:10.5194/bg-12-3525-2015.
  Has­sen­rück, C., Hofmann, L.C., Bischof, K., *Ra­met­te, A. (2015) Se­agrass bio­film com­mu­nities at a na­tu­ral­ly CO2-rich vent. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 7(3), 516-525. doi: 10.1111/1758-2229.12282.
  Hawkes J.A., Ros­sel P.E., Stubbins A., Butterfield D., Connelly D.P., Achterberg E.P., Koschinsky A., Chavagnac V., Hansen C.T., Bach W., Dittmar T. (2015) Ef­fi­ci­ent re­mo­val of re­cal­cit­rant deep-oce­an dis­sol­ved or­ga­nic mat­ter du­ring hydro­ther­mal cir­cu­la­ti­on. Na­tu­re Geo­sci­ence 8:856–860. doi:10.1038/ngeo2543.
  Ionescu D., Heim C., Polerecky L., *Ra­met­te A., Haeusler S., Bizic-Ionescu M., Thiel V., de Beer D. (2015) Di­ver­si­ty of iron oxi­di­zing and re­du­cing bac­te­ria in flow re­ac­tors in the Äspö Hard Rock La­bo­ra­to­ry. Geo­mi­cro­bio­lo­gy Jour­nal 32:207-220. doi:10.1080/01490451.2014.884196.
  Katlein C., Arndt S., Nicolaus M., Perovich D.K., Jakuba M.V., Suman S., Elliott S., Whitcomb L.L., McFarland C.J., Gerdes R., Boe­ti­us A., German C.R. (2015) In­flu­ence of ice thick­ness and sur­face pro­per­ties on light trans­mis­si­on through Arc­tic sea ice. Jour­nal of Geo­phy­si­cal Re­se­arch: Oce­ans 120(9): 5932-5944. doi:10.1002/2015JC010914.
  Katlein C., Fernán­dez-Mén­dez M., Wenz­hö­fer F., Nicolaus M. (2015) Dis­tri­bu­ti­on of al­gal ag­gre­ga­tes un­der sum­mer sea ice in the Cen­tral Arc­tic. Po­lar Bio­lo­gy 38(5): 719-731. doi:10.1007/s00300-014-1634-3.
  Lee Y.J., Matrai P.A., Friedrichs M.A.M., Saba V.S., Antoine D., Ardyna M., Asanuma I., Babin M., Bélanger S., Benoît‐Gagné M., Devred E., Fernán­dez‐Mén­dez M., Gentili B., Hirawake T., Kang S.-H., Kameda T., Katlein C., Lee S.H., Lee Z., Mélin F., Scardi M., Smyth T.J., Tang S., Turpie K.R., Waters K.J., Westberry T.K. (2015) An as­sess­ment of phy­to­plank­ton pri­ma­ry pro­duc­tivi­ty in the Arc­tic Oce­an from sa­tel­li­te oce­an co­lor/​in situ chlo­ro­phyll‐a‐ba­sed mo­dels. Jour­nal of Geo­phy­si­cal Re­se­arch: Oce­ans 120(9): 6508-6541. doi:10.1002/2015JC011018.
  *Licht­schlag A., Do­nis D., Jans­sen F., Jes­sen G.L., Holtappels M., Wenz­hö­fer F., Mazlumyan S., Sergeeva N., Waldmann C., Boe­ti­us A. (2015) Ef­fects of fluc­tua­ting hy­po­xia on bent­hic oxy­gen con­sump­ti­on in the Black Sea (Cri­me­an shelf). Bio­geo­sci­en­ces 12: 5075-5092. doi:10.5194/bg-12-5075-2015.
  Nolla-Ardèvol V., Strous M., Te­get­mey­er H.E. (2015) An­ae­ro­bic di­ges­ti­on of the mi­cro­al­ga Spi­ru­li­na at ex­tre­me al­ka­li­ne con­di­ti­ons: bio­gas pro­duc­tion, me­ta­ge­no­me, and me­ta­tran­scrip­to­me. Fron­tiers in Mi­cro­bio­lo­gy 6(597): 597. doi:10.3389/fmicb.2015.00597.
 

Nolla-Ardèvol V., Peces M., Strous M., Te­get­mey­er H.E. (2015) Me­ta­ge­no­me from a Spi­ru­li­na di­gesting bio­gas re­ac­tor: ana­ly­sis via bin­ning of con­tigs and clas­si­fi­ca­ti­on of short reads. BMC Mi­cro­bio­lo­gy. 15:277. doi:10.1186/s12866-015-0615-1.

  *Pop Ris­to­va P., Wenz­hö­fer F., *Ra­met­te A., *Fel­den J., Boe­ti­us A. (2015) Spa­ti­al sca­les of bac­te­ri­al com­mu­ni­ty di­ver­si­ty at cold seeps (Eas­tern Me­di­ter­ra­ne­an Sea). ISME Jour­nal 9(6): 1306-1318. doi:10.1038/ismej.2014.217.
  Raulf F.F., Fabricius K., Uthicke S., de Beer D., Abed R.M.M., *Ra­met­te A. (2015) Chan­ges in mi­cro­bi­al com­mu­nities in co­as­tal se­di­ments along na­tu­ral CO2 gra­di­ents at a vol­ca­nic vent in Pa­pua New Gui­nea. En­vi­ron­men­tal Mi­cro­bio­lo­gy 17(10): 3678-3691. doi:10.1111/1462-2920.12729.
  Recuenco-Muñoz L., #Off­re P., Valledor L., Lyon D., Weckwerth W., Wienkoop S. (2015) Tar­ge­ted quan­ti­ta­ti­ve ana­ly­sis of a di­ur­nal Ru­Bis­CO sub­u­nit ex­pres­si­on and trans­la­ti­on pro­fi­le in Chla­my­do­mo­nas rein­hard­tii in­tro­du­cing a no­vel mass wes­tern ap­proach. Jour­nal of Pro­teo­mics 113: 143-153. doi:10.1016/j.jprot.2014.09.026.
  Ros­sel P.E., Stubbins A., Hach P., Dittmar T. (2015) Bio­a­vail­a­bi­li­ty and mole­cu­lar com­po­si­ti­on of dis­sol­ved or­ga­nic mat­ter from a dif­fu­se hydro­ther­mal sys­tem. Ma­ri­ne Che­mis­try 177: 257-266. doi:10.1016/j.marchem.2015.07.002.
  Ruff S. E., Biddle J. F., Teske A. P., Knittel K., Boe­ti­us A., *Ra­met­te A. (2015) Glo­bal dis­per­si­on and lo­cal di­ver­si­fi­ca­ti­on of the me­tha­ne seep mi­cro­bio­me. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces USA 112(13): 4015-4020. doi:10.1073/pnas.1421865112.
 

Stagars M. H., Ruff S. E., Amann R., Knittel K. (2015) High di­ver­si­ty of an­ae­ro­bic al­ka­ne-de­gra­ding mi­cro­bi­al com­mu­nities in ma­ri­ne seep se­di­ments ba­sed on their (1-me­thyl­al­kyl) suc­ci­na­te syn­tha­se ge­nes. Fron­tiers in Mi­cro­bio­lo­gy 6: 1511. doi:10.3389/fmicb.2015.01511.

 

Thessen A. E., Bunker D. E., But­ti­gieg P. L., Cooper L. D., Dahdul W. S., Domisch S., Franz N.M., Jaiswal P., Lawrence-Dill C. J., Midford P. E., Mungall C. J., Ramírez M. J., Specht C. D., Vogt L., Vos R. A., Walls R. L., White J. W., Zhang G., Deans A. R., Huala E., Lewis S. E., Mabee P. M. (2015) Emer­ging se­man­ti­cs to link phe­no­ty­pes and en­vi­ron­ment. PeerJ 3: e1470. doi:10.7717/peerj.1470.

  We­ge­ner G., Kru­ken­berg V., Riedel D., Te­get­mey­er H.E., Boe­ti­us A. (2015) In­ter­cel­lu­lar wiring enables elec­tron trans­fer bet­ween me­tha­notro­phic ar­chaea and bac­te­ria. Na­tu­re 526(7574): 587-590. doi:10.1038/nature15733.

 

2014 Allen K.D., We­ge­ner G., White R.H. (2014) Dis­co­very of mul­ti­ple mo­di­fied F430 co­en­zy­mes in me­tha­no­gens and an­ae­ro­bic me­tha­notro­phic Ar­chaea sug­gests pos­si­ble new ro­les for F430 in na­tu­re. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 80(20): 6403-6412. doi:10.1128/AEM.02202-14.
  Al-Najjar M.A.A., Ra­met­te A.*, Kühl M., Hamza W., Klatt J.M. and Polerecky L. (2014) Spa­ti­al pat­terns and links bet­ween mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on and func­tion in cya­no­bac­te­ri­al mats. Front. Mi­cro­bi­ol. 5: 406. doi:10.3389/fmicb.2014.00406.
  Buttigieg, P.L., Ramette, A. (2014) A gui­de to sta­tis­ti­cal ana­ly­sis in mi­cro­bi­al eco­lo­gy: a com­mu­ni­ty-fo­cu­sed, li­ving re­view of mul­ti­va­ria­te data ana­ly­ses. FEMS Mi­cro­bio­lo­gy Eco­lo­gy, 90: 543–550. doi: 10.1111/1574-6941.12437.
  *Fel­den J., Ruff S.E., Ertefai T., Inagaki F., Hinrichs K.-U., Wenz­hö­fer F. (2014) An­ae­ro­bic me­tha­notro­phic com­mu­ni­ty of a 5346 m-deep ve­si­co­my­id clam co­lo­ny in the Ja­pan Trench. Geo­bio­lo­gy, 12: 183-199. doi:10.1111/gbi.12078.
  Fernán­dez-Mén­dez M., Wenz­hö­fer F., Peeken I., Sorensen H.L., Glud R.N., Boe­ti­us A. (2014) Com­po­si­ti­on, buoyan­cy re­gu­la­ti­on and fate of ice al­gal ag­gre­ga­tes in the Cen­tral Arc­tic Oce­an. PLoS ONE 9(9): e107452. doi:10.1371/journal.pone.0107452.
  Feseker T., Boe­ti­us A., Wenz­hö­fer F., Blandin J., Olu K., Yoerger D.R., Camilli R., German C.R., de Beer D. (2014) Erup­ti­on of a deep-sea mud vol­ca­no trig­gers ra­pid se­di­ment mo­ve­ment. 5: 5385. doi: 10.1038/ncomms6385.
  Katayama T., Wilkinson M.D., Aoki-Kinoshita K.F., Kawashima S., Yamamoto Y., Yamaguchi A., Okamoto S., Kawano S., Kim J.-D., Wang Y., Wu H., Kano Y., Ono H., Bono H., Kocbek S., Aerts J., Akune Y., Antezana E., Arakawa K., Aranda B., Baran J., Bolleman J., Bonnal R.J.P., But­ti­gieg P.L., Campbell M.P., Chen Y., Chiba H., Cock P.J.A., Cohen K.B., Constantin A. et al. (2014) Bio­Hacka­thon se­ries in 2011 and 2012: pe­ne­tra­ti­on of on­to­lo­gy and lin­ked data in life sci­ence do­mains. J Bio­med Se­mant. 5:5. doi:10.1186/2041-1480-5-5.
  Koop-Jakobsen K., Wenz­hö­fer F. (2014) The Dy­na­mics of Plant-Me­dia­ted Se­di­ment Oxy­ge­na­ti­on in Spar­ti­na an­gli­ca Rhi­zo­s­phe­res - a Pla­nar Op­to­de Stu­dy. Es­tua­ries and Co­asts. 38(3): 951-963. doi:10.1007/s12237-014-9861-y.
  Ramette A., Buttigieg P.L. (2014) The R pa­cka­ge otu2ot for im­ple­men­ting the en­tro­py de­com­po­si­ti­on of nu­cleo­ti­de va­ria­ti­on in se­quence data. Front. Mi­cro­bi­ol. 5:601. doi:10.3389/fmicb.2014.00601.
  Römer M., Sahling H., Pape T., dos Santos Ferreira C., Wenz­hö­fer F., Boe­ti­us A., Bohrmann G. (2014) Me­tha­ne flu­xes and car­bo­na­te de­po­sits at a cold seep area of the Cen­tral Nile Deep Sea Fan, Eas­tern Me­di­ter­ra­ne­an Sea. Ma­ri­ne Geo­lo­gy 347: 27-42. doi:10.1016/j.margeo.2013.10.011
  Ruff S. E., Probandt D., Zinkann A.-C., Iversen M., Klaas C., Würzberg L., Rödiger-Krombholz N., Wolf-Gladrow D., Amann R., Knittel K. (2014) In­di­ca­ti­ons for al­gae-de­gra­ding bent­hic mi­cro­bi­al com­mu­nities in the deep-sea se­di­ments along the Ant­arc­tic Po­lar Front. Deep-Sea Re­se­arch Part II, 108: 6-16. doi: 10.1016/j.dsr2.2014.05.011.
  Turnewisch R., Falahat S., Stehlikova J., Oguri K., Glud R.N., Middelboe M., Kitazato H., Wenz­hö­fer F., Ando K., Fujio S., Yanagimoto D. (2014) Re­cent se­di­ment dy­na­mics in ha­dal tren­ches: evi­dence for the in­flu­ence of hig­her fre­quen­cy (ti­d­al, near-iner­ti­al) flu­id dy­na­mics. Deep Sea Re­se­arch I 90: 125–138. doi:10.1016/j.dsr.2014.05.005.
  Walls R.L., Deck J., Guralnick R., Baskauf S., Beaman R., Blum S., Bowers S., But­ti­gieg P.L., Davies N., Endresen D., Gandolfo M.A., Hanner R., Janning A., Krishtalka L., Matsunaga A., Midford P., Morrison N., Tuama É.Ó., Schildhauer M., Smith B., Stucky B.J., Thomer A., Wieczorek J., Whitacre J., Wooley J. (2014) Se­man­ti­cs in Sup­port of Bio­di­ver­si­ty Know­ledge Dis­co­very: An In­tro­duc­tion to the Bio­lo­gi­cal Collec­tions On­to­lo­gy and Re­la­ted On­to­lo­gies. PLoS ONE 9(3): e89606. doi:10.1371/journal.pone.0089606.
  Walls R.L., Guralnick R., Deck J., Buntzman A., But­ti­gieg P.L., Davies N., Denslow M.W., Gallery R.E., Parnell J., Osumi-Sutherland D., Robbins R.J., Rocca-Serra P., Wieczorek J., and Zheng J. (2014) Mee­ting re­port: ad­van­cing prac­tical ap­p­li­ca­ti­ons of bio­di­ver­si­ty on­to­lo­gies. Stand. Ge­no­mic Sci. 9:17doi:10.1186/1944-3277-9-17
  Wörmer L., Elvert M., Fuchser J., Lipp J.S., But­ti­gieg P.L., Zabel M. and Hinrichs K.-U. (2014) Ul­tra-high-re­so­lu­ti­on pa­leo­en­vi­ron­men­tal re­cor­ds via di­rect la­ser-ba­sed ana­ly­sis of li­pid bio­mar­kers in se­di­ment core sam­ples. Proc Natl Acad Sci. 111: 15669-15674. doi:10.1073/pnas.1405237111
  Yoshinaga M.Y., Holler T., Goldhammer T., We­ge­ner G., Pohlman J.P., Brunner B., Kuypers M.M.M., Hinrichs K.-U., Elvert M. (2014) Car­bon iso­to­pe equi­li­bra­ti­on du­ring sulp­ha­te-li­mi­ted an­ae­ro­bic oxi­da­ti­on of me­tha­ne. Na­tu­re Geo­sci­ence 7:190-194. doi:10.1038/ngeo2069.
  Zimmermann J., Lott C., We­ber M., Ra­met­te A., Bright M., Dubilier N., Petersen J.M. (2014) Dual sym­bio­sis with co-oc­cur­ring sul­fur-oxi­di­zing sym­bi­onts in ve­sti­men­ti­fe­ran tu­be­worms from a Me­di­ter­ra­ne­an hydro­ther­mal vent. En­vi­ron­men­tal Mi­cro­bio­lo­gy. doi:10.1111/1462-2920.12427.
  Zinger* L., Boetius A., Ramette A. (2014) Bac­te­ri­al taxa-area and dis­tan­ce-de­cay re­la­ti­ons­hips in ma­ri­ne en­vi­ron­ments. Mole­cu­lar Eco­lo­gy 23(4): 954-964. doi:10.1111/mec.12640.

 

2013 Bayon G., Dupré S., Ponzevera E., Etoubleau J., Cheron S., Pierre C., Mascle J., Boe­ti­us A., de Lange G. (2013) For­ma­ti­on of car­bo­na­te chim­neys in the Me­di­ter­ra­ne­an Sea lin­ked to deep-wa­ter oxy­gen de­p­le­ti­on. Na­tu­re Geo­sci­ence 6:755-760. doi:10.1038/ngeo1888.
  Bi­en­hold, C., *Pop Ris­to­va, P., Wenz­hö­fer, F., Dittmar, T., Boe­ti­us, A. (2013) How Deep-Sea Wood Falls Sustain Che­mo­syn­the­tic Life. PLoS One 81: e53590. doi:10.1371/journal.pone.0053590
  Boe­ti­us, A., S. Albrecht, K. Bakker, C. Bi­en­hold, *J. Fel­den, M. Fernán­dez-Mén­dez, S. Hendricks, C. Katlein, C. Lalande, T. Krumpen, M. Nicolaus, I. Peeken, B. Rabe, A. Rogacheva, E. Rybakova, R. Somavilla, F. Wenz­hö­fer and the RV Polarstern ARK27-3-Shipboard Science Party (2013) Ex­port of al­gal bio­mass from the mel­ting Arc­tic sea ice. Sci­ence 339( 6126): 1430-1432. doi:10.1126/science.1231346.
  Boe­ti­us A, Wenz­hö­fer F (2013) Seaf­loor oxy­gen con­sump­ti­on fu­el­led by me­tha­ne from cold seeps. Na­tu­re Geo­sci­ence 6(9): 725-734. doi:10.1038/ngeo1926.
  But­ti­gieg, P. L., Hankeln, W., Kostadinov, I., Kottmann, R., Yilmaz, P., Duhaime, M. B., Glöckner, F. O. (2013) Eco­ge­no­mic Per­spec­tives on Do­mains of Un­k­nown Func­tion: Cor­re­la­ti­on-Ba­sed Ex­plo­ra­ti­on of Ma­ri­ne Me­ta­ge­no­mes. (I. Fried­berg, Ed.)PLoS ONE, 8(3): e50869. doi:10.1371/journal.pone.0050869.
  But­ti­gieg P.L., N. Morrison, B. Smith, C.J. Mungall, S.E. Lewis and the ENVO Consortium (2013) The en­vi­ron­ment on­to­lo­gy: con­textua­li­sing bio­lo­gi­cal and bio­me­di­cal en­t­i­ties. Jour­nal of Bio­me­di­cal Se­man­ti­cs 4(1): 43. doi:10.1186/2041-1480-4-43.
  Chennu, A., Färber, P., Volkenborn, N., Al-Najjar, M. A. A., Jans­sen, F., de Beer, D., Polerecky, L. (2013) Hy­per­spec­tral ima­ging of the mi­cro­s­ca­le dis­tri­bu­ti­on and dy­na­mics of mi­cro­phy­to­bent­hos in in­terti­dal se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods, 11: 511-528 doi:10.4319/lom.2013.11.511.
  Cherkasheva A, Bracher A, Melsheimer C, Köberle C, Gerdes R, Nöthig E-M, Bauerfeind E, Boe­ti­us A (2013) In­flu­ence of the phy­si­cal en­vi­ron­ment on po­lar phy­top­klank­ton blooms: a case stu­dy in the Fram Strait. Jour­nal of Ma­ri­ne Sys­tems 132: 196-207. doi: 10.1016/j.jmarsys.2013.11.008.
  de Beer D., M. Haeckel, J. Neu­mann, G. We­ge­ner, F. Inagaki, A. Boe­ti­us (2013) Sa­tu­ra­ted CO2 in­hi­bits mi­cro­bi­al pro­ces­ses in CO2-ven­ted deep-sea se­di­ments. Bio­geo­sci­en­ces 10:5639–5649.
  Deck, J., K. Barker, R. Beaman, P.L. But­ti­gieg, G. Dröge, R. Guralnick, C. Miller, E. Tuaman, Z. Murrell, C. Parr, B. Robbins, D. Schigel, B. Stucky, R. Walls, J. Wieczorek, N. Morrison, J. Wooley (2013) Cla­ri­fy­ing Con­cepts and Terms in Bio­di­ver­si­ty In­for­ma­tics. Stan­dards in Ge­no­mic Sci­en­ces 8(2), 352–359. doi:10.4056/sigs.3907833.
  *Fel­den, J., A. Licht­schlag, F. Wenz­hö­fer, D. de Beer, T. Feseker, P. Pop Ris­to­va*, G. de Lange, A. Boe­ti­us (2013) Li­mi­ta­ti­ons of mi­cro­bi­al hy­dro­c­ar­bon de­gra­da­ti­on at the Amon Mud Vol­ca­no (Nile Deep Sea Fan). Bio­geo­sci­en­ces 10:3269–3283. doi.org/10.5194/bg-10-3269-2013
  Friedrich, J., F. Jans­sen, D. Aleynik, H.W. Bange, N. Boltacheva, M.N. Çağatay, A.W. Dale, G. Etiope, Z. Erdem, M. Geraga, A. Gilli, M.T. Gomoiu, P.O.J. Hall, D. Hansson, Y. He, M. Holtappels, M.K. Kirf, M. Kononets, S. Konovalov, A. Licht­schlag, D.M. Livingstone, G. Marinaro, S. Mazlumyan, S. Naeher, R.P. North, G. Papatheodorou, O. Pfannkuche, R. Prien, G. Rehder, C.J. Schubert, T. Soltwedel, S. Sommer, H. Stahl, E.V. Stanev, A. Teaca, A. Tengberg, C. Waldmann, B. Wehrli, F. Wenz­hö­fer (2013) In­ves­ti­ga­ting hy­po­xia in aqua­tic en­vi­ron­ments: di­ver­se ap­proa­ches to ad­dres­sing a com­plex pheno­me­non. Bio­geo­sci­en­ces Dis­cus­sions 10, 12655-12772. doi:10.5194/bgd-10-12655-2013.
  Glud RN, Wenz­hö­fer F, Middelboe M, Oguri K Turnewitsch R, Canfield DE, Kitazato H (2013) High ra­tes of bent­hic mi­cro­bi­al ac­tivi­ty at 10.900 me­ters depth: Re­sults from the Chal­len­ger Deep (Ma­ria­na Trench). Na­tu­re Geo­sci­ence 6:284. doi:10.1038/NGEO1773.
  Go­bet A, Boe­ti­us A, Ra­met­te A (2013) Eco­lo­gi­cal co­he­rence of di­ver­si­ty pat­terns de­ri­ved from clas­si­cal fin­ger­prin­ting and Next Ge­ne­ra­ti­on Se­quen­cing tech­ni­ques. En­vi­ron­men­tal mi­cro­bio­lo­gy 16(9): 2672-2681. doi:10.1111/1462-2920.12308.
  Holtappels M, Glud RN, Do­nis D, Liu B, Hume A, Wenz­hö­fer F, Kuypers M (2013) Ef­fects of tran­si­ent bot­tom wa­ter cur­rents and oxy­gen con­cen­tra­ti­ons on bent­hic ex­ch­an­ge ra­tes as as­ses­sed by eddy cor­re­la­ti­on mea­su­re­ments. Jour­nal of Geo­phy­si­cal Re­se­arch – Oce­ans 118: 1–13. doi:10.1002/jgrc.20112.
  Ja­cob M, Soltwedel T, Boe­ti­us A, Ra­met­te A (2013) Bio­geo­gra­phy of Deep-Sea Bent­hic Bac­te­ria at Re­gio­nal Sca­le (LTER HAUS­GAR­TEN, Fram Strait, Arc­tic). PLoS ONE 8(9): e72779. doi:10.1371/journal.pone.0072779.
  Mey­er S, We­ge­ner G, Lloyd KG, Teske A, Boe­ti­us A, Ra­met­te A (2013) Mi­cro­bi­al ha­bi­tat con­nec­tivi­ty across spa­ti­al sca­les and hydro­ther­mal tem­pe­ra­tu­re gra­di­ents at Gu­ay­mas Ba­sin. Front. Mi­cro­bi­ol. 4: 207. doi:10.3389/fmicb.2013.00207.
  Niemann H, Linke P, Knittel K, MacPherson E, Boe­ti­us A, Brückmann W, Larvik G, Wallmann K, Schacht U, Omoregie E, Hilton D, Brown K, Rehder G (2013) Me­tha­ne-car­bon flow into the bent­hic food web at cold seeps - a case stu­dy from the Cos­ta Rica sub­duc­tion zone. PLOS One, 8(11): e74894. doi:10.1371/journal.pone.0074894.
  Ruff, S.E., Arnds, J., Knittel, K., Amann, R.I., We­ge­ner, G., Ra­met­te, A., Boe­ti­us, A. (2013) Mi­cro­bi­al com­mu­nities of deep sea me­tha­ne seeps at Hi­kur­an­gi con­ti­nen­tal mar­gin (New Ze­a­land), Plo­sO­ne, 8(9) e72627. doi:10.1371/joournal.pone.0072627
  Schött­ner, S., F. Hoffmann, P. Cárdenas, H.T. Rapp, A. Boe­ti­us, A. Ra­met­te (2013) Re­la­ti­ons­hips bet­ween host phy­lo­ge­ny, host type and bac­te­ri­al com­mu­ni­ty di­ver­si­ty in cold-wa­ter co­ral reef spon­ges. PLoS One, 8(2): e55505. doi:10.1371/journal.pone.0055505.
  Soltwedel, T., Schauer, U., Boebel, O., Nöthig, E.-M., Bracher, A., Metfies, K., Schewe, I., Klages, M., Boe­ti­us, A. (2013) FRAM Fron­tiers in Arc­tic ma­ri­ne Mo­ni­to­ring: Per­ma­nent Ob­ser­va­tions in a Gate­way to the Arc­tic Oce­an. In: OCE­ANS-Ber­gen, 2013 MTS/​IEEE (pp. 1-7). IEEE.
  Stanev, E., Y. He, S. Grayek, A. Boe­ti­us (2013) Oxy­gen dy­na­mics in the Black Sea as seen by Argo pro­filing floats. Geo­phy­si­cal Re­se­arch Let­ters 40: 1-6. doi:10.1002/grl.50606.
  Xie, S., Lipp, J.S., We­ge­ner, G., Ferdelman, T., Hinrichs, K.-U. (2013) Tur­no­ver of mi­cro­bi­al li­pids in the deep bio­s­phe­re and growth of bent­hic ar­chae­al po­pu­la­ti­ons. Proc. Natl. Acad. Sc. USA, 110(15): 6010-6014. doi:10.1073/pnas.1218569110.

 

2012 Abed, R.M.M., A. Ra­met­te, V. Hübner, P. De Deckker, D. de Beer (2012) Mi­cro­bi­al di­ver­si­ty of eo­li­an dust sour­ces from sa­li­ne lake se­di­ments and bio­lo­gi­cal soil crusts in arid Sou­thern Aus­tra­lia. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 80: 294-304. doi:10.1111/j.1574-6941.2011.01289.x.
  Amend, A.S., T.A. Oliver, L.A. Amaral-Zettler, A. Boe­ti­us, J.A. Fuhrman, M.C. Horner-Devine, S.M. Huse, D.B.M. Welch, A.C. Martiny, A. Ra­met­te, L. Zin­ger*, M.L. Sogin, J.B.H. Martiny (2012) Ma­cro­eco­lo­gi­cal pat­terns of ma­ri­ne bac­te­ria on a glo­bal sca­le. Jour­nal of Bio­geo­gra­phy 40(4): 800-811. doi:10.1111/jbi.12034.
  Bauermeister, J., A. Ra­met­te, S. Dattagupta (2012) Re­pea­ted­ly evol­ved host-spe­ci­fic ec­to­sym­bio­ses bet­ween sul­fur-oxi­di­zing bac­te­ria and am­phi­pods li­ving in a cave eco­sys­tem. PLoS One 7(11): e50254. doi:10.1371/journal.pone.0050254
  Biddle, J.F., Z. Cardman, H. Mendlovitz, D.B. Albert, K.G. Lloyd, A. Boe­ti­us, A. Teske (2012) An­ae­ro­bic oxi­da­ti­on of me­tha­ne at dif­fe­rent tem­pe­ra­tu­re re­gimes in Gu­ay­mas Ba­sin hydro­ther­mal se­di­ments. The ISME Jour­nal 6, 1018-1031. doi:10.1038/ismej.2011.164
  Bi­en­hold C, Boe­ti­us A, Ra­met­te A (2012) The en­er­gy-di­ver­si­ty re­la­ti­ons­hip of com­plex bac­te­ri­al com­mu­nities in Arc­tic deep-sea se­di­ments. The ISME Jour­nal 6:724-732. doi:10.1038/ismej.2011.140
  Borda E, Kudenov JD, Bi­en­hold C, Rouse G (2012) Towards a re­vi­sed Am­phi­no­mi­dae (An­ne­l­i­da, Am­phi­no­mi­da): de­scrip­ti­on and af­fi­nities of a new ge­nus and spe­cies from the Nile Deep-sea Fan, Me­di­ter­ra­ne­an Sea. Zoo­lo­gi­ca Scrip­ta 41(3): 307-325. doi:10.1111/j.1463-6409.2012.00529.x
  Chipman, L., M. Huettel, P. Berg, V. Meyer, I. Klimant, R.N. Glud, F. Wenz­hoefer (2012) Oxy­gen op­to­des as fast sen­sors for eddy cor­re­la­ti­on mea­su­re­ments in aqua­tic sys­tems. Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 10, 304-316. doi:10.4319/lom.2012.10.304
  Decker, C., M. Morineaux, S. Van Gaever, J.-C. Caprais, A. Licht­schlag*, O. Gauthier, A.C. Andersen, K. Olu (2012) Ha­bi­tat he­te­ro­gen­ei­ty in­flu­en­ces cold-seep ma­cro­fau­nal com­mu­nities wi­t­hin and among seeps along the Nor­we­gi­an mar­gin. Part 1: ma­cro­fau­nal com­mu­ni­ty struc­tu­re. Ma­ri­ne Eco­lo­gy 33, 205-230. doi:10.1111/j.1439-0485.2011.00503.x
  Fi­scher JP, Koop-Jakobsen K (2012) The Mul­ti Fi­ber Op­to­de (MuFO): A no­vel sys­tem for si­mul­ta­neous ana­ly­sis of mul­ti­ple fi­ber op­tic oxy­gen sen­sors. Sen­sors and Ac­tua­tors B: Che­mi­cal, 168: 354-359. doi:10.1016/j.snb.2012.04.034
  Go­bet, A.*, S.I. Böer*, S.M. Huse, J.E.E. van Beusekom, C. Quince, M.L. Sogin, A. Boe­ti­us, A. Ra­met­te (2012) Di­ver­si­ty and dy­na­mics of rare and of re­si­dent bac­te­ri­al po­pu­la­ti­ons in co­as­tal sands. The ISME Jour­nal 6, 542-553. doi:10.1038/ismej.2011.132
  Grün­ke, S., A. Licht­schlag, D. de Beer, J. Fel­den*, V. Sal­man#, A. Ra­met­te, H.N. Schulz-Vogt, A. Boe­ti­us (2012) Mats of psy­chro­phi­lic thio­tro­phic bac­te­ria as­so­cia­ted with cold seeps of the Ba­rents Sea. Bio­geo­sci­en­ces 9, 2947-2960. doi:10.5194/bg-9-2947-2012
  Holler T, We­ge­ner G, Niemann H, Deusner C, Ferdelman TG, Boe­ti­us A, Brunner B, Widdel F (2012) Car­bon and sul­fur back flux du­ring an­ae­ro­bic mi­cro­bi­al oxi­da­ti­on of me­tha­ne and cou­p­led sul­fa­te re­duc­tion. PNAS 109(51): 21170-21173. doi:10.1073/pnas.1218683109
  Ionescu, D., C. Siebert, L. Polerecky, Y.Y. Munwes, C. Lott, S. Häusler, M. Bižić-Ionescu, C. Quast, J. Peplies, F.O. Glöckner, A. Ra­met­te, T. Rödiger, T. Dittmar, A. Oren, S. Geyer, H.-J. Stärk, M. Sauter, T. Licha, J.B. Laronne, D. de Beer (2012) Mi­cro­bi­al and che­mi­cal cha­rac­te­riza­t­i­on of un­der­wa­ter fresh wa­ter springs in the Dead Sea. PLoS One 7: e38319. doi:10.1371/journal.pone.0038319
  Kellermann, M.Y., G. We­ge­ner, M. Elvert, M.Y. Yoshinaga, Y.-S. Lin, T. Holler, X. Prieto Mollar, K. Knittel, K.-U. Hinrichs (2012) Au­to­tro­phy as pre­do­mi­nant mode of car­bon fixa­ti­on in an­ae­ro­bic me­tha­ne-oxi­di­zing com­mu­nities. Proc. Natl. Acad. Sci. 109(47): 19321-19326 doi:10.1073/pnas.1208795109.
  Kleindienst, S., A. Ra­met­te, R. Amann, K. Knittel (2012) Dis­tri­bu­ti­on and in situ ab­un­dance of sul­fa­te-re­du­cing bac­te­ria in di­ver­se ma­ri­ne hy­dro­c­ar­bon seep se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy 14, 2689-2710. doi:10.1111/j.1462-2920.2012.02832.x
  Milucka, J., T.G Ferdelman, L. Polerecky, D. Franzke, G. We­ge­ner, M. Schmid, I. Lieberwirth, M. Wagner, F. Widdel, M.M.M. Kuypers (2012) Zero-va­lent sulphur is a key in­ter­me­dia­te in ma­ri­ne me­tha­ne oxi­da­ti­on. Na­tu­re 491(7425): 541-546. doi:10.1038/nature11656.
  Nguyen, M.T., V. Brüchert, M. Formolo, G. We­ge­ner, L. Ginters, B.B Jørgensen, T.G. Ferdelmann (2012) The im­pact of se­di­ment and car­bon flu­xes on the bio­geo­che­mis­try of me­tha­ne and sul­fur in lit­to­ral Bal­tic Sea se­di­ments (Him­merf­jär­den, Swe­den). Es­tua­ries and Co­asts 36(1): 98-115. doi:10.1007/s12237-012-9557-0.
  *Pop Ris­to­va, P., F. Wenz­hö­fer, A. Ra­met­te, M. Zabel, D. Fischer, S. Kasten, A. Boe­ti­us (2012) Bac­te­ri­al di­ver­si­ty and bio­geo­che­mis­try of dif­fe­rent che­mo­syn­the­tic ha­bi­tats of the RE­GAB cold seep (West Af­ri­can mar­gin, 3160 m wa­ter depth). Bio­geo­sci­en­ces 9, 5031-5048. doi:10.5194/bg-9-5031-2012
  Sawall, Y., C. Richter, A. Ra­met­te (2012) Ef­fects of eu­tro­phi­ca­ti­on, sea­so­na­li­ty and ma­cro­fou­ling on the di­ver­si­ty of bac­te­ri­al bio­films in Equa­to­ri­al co­ral reefs. PLoS One 7: e39951. doi:10.1371/journal.pone.0039951
  Schött­ner S, Wild C, Hoffmann F, Boe­ti­us A, Ra­met­te A (2012) Spa­ti­al Sca­les of Bac­te­ri­al Di­ver­si­ty in Cold-Wa­ter Co­ral Reef Eco­sys­tems. PLoS ONE 7(3): e32093. doi:10.1371/journal.pone.0032093
  We­ge­ner G, Bausch M, Holler T, Thang NM, Mollar XM, Kellermann MY, Hinrichs K-U, Boe­ti­us A (2012) As­ses­sing sub-seaf­loor mi­cro­bi­al ac­tivi­ty by com­bi­ned sta­ble iso­to­pe pro­bing with deu­te­ra­ted wa­ter and 13C-bi­c­ar­bo­na­te. En­vi­ron­men­tal Mi­cro­bio­lo­gy 14(6): 1517-1527. doi:10.1111/j.1462-2920.2012.02739.x
  Yanagawa, K., Y. Morono, D. de Beer, M. Haeckel, M. Sunamura, T. Futagami, T. Hoshino, T. Terada, K. Nakamura, T. Urabe, G. Rehder, A. Boe­ti­us, F. Inagaki (2012) Me­ta­bo­li­cal­ly ac­tive mi­cro­bi­al com­mu­nities in ma­ri­ne se­di­ment un­der high-CO2 and low-pH ex­tre­mes. The ISME Jour­nal 7(3): 555-567. doi:10.1038/ismej.2012.124.

 

2011 Beck, M., T. Riedel, J. Graue, J. Köster, N. Kowalski, C.S. Wu, G. We­ge­ner, Y. Lipsewers, H. Freund, M.E. Böttcher, H.-J. Brumsack, H. Cypionka, J. Rullkötter, B. Engelen (2011) Im­print of past and pre­sent en­vi­ron­men­tal con­di­ti­ons on mi­cro­bio­lo­gy and bio­geo­che­mis­try of co­as­tal Qua­tern­ary se­di­ments. Bio­geo­sci­en­ces 8, 55–68. doi:10.5194/bg-8-55-2011
  Böggemann, M., C. Bi­en­hold, S.M. Gaudron (2011) A new spe­cies of Gly­ce­ri­dae (An­ne­l­i­da: "Po­ly­chae­ta") re­co­ve­r­ed from or­ga­nic sub­stra­te ex­pe­ri­ments at cold seeps in the eas­tern Me­di­ter­ra­ne­an Sea. Ma­ri­ne Bio­di­ver­si­ty 42(1): 47-54. doi:10.1007/s12526-011-0091-2.
  Bru, D., A. Ra­met­te, N.P.A. Saby, S. Dequiedt, L. Ranjard, C. Jolivet, D. Arrouays, L. Philippot (2011) De­ter­mi­nants of the dis­tri­bu­ti­on of ni­tro­gen-cy­cling mi­cro­bi­al com­mu­nities at the land­scape sca­le. ISME Jour­nal 5, 532-542. doi:10.1038/ismej.2010.130
  Decker, C., M. Morineaux, S. van Gaever, J.-C. Caprais, A. Licht­schlag#, O. Gauthier, A.C. Andersen, K. Olu (2011) Ha­bi­tat he­te­ro­gen­ei­ty in­flu­en­ces cold-seep ma­cro­fau­nal com­mu­nities wi­t­hin and among seeps along the Nor­we­gi­an mar­gin. Part 1: ma­cro­fau­nal com­mu­ni­ty struc­tu­re. Ma­ri­ne Eco­lo­gy 33(2): 205-230. doi:10.1111/j.1439-0485.2011.00503.x
  Duperron, S., H. Guezi, S.M. Gaudron, P. Pop Ris­to­va, F. Wenz­hö­fer, A. Boe­ti­us (2011) Re­la­ti­ve ab­un­dan­ces of me­tha­ne- and sulphur-oxi­di­sing sym­bi­onts in the gills of a cold seep mus­sel and link to their po­ten­ti­al en­er­gy sour­ces. Geo­bio­lo­gy 9, 481-491. doi:10.1111/j.1472-4669.2011.00300.x
  Girnth, A.-C., S. Grün­ke, A. Licht­schlag, J. Fel­den, K. Knittel, F. Wenz­hö­fer, D. de Beer, A. Boe­ti­us (2011) A no­vel, mat-for­ming Thio­mar­ga­ri­ta po­pu­la­ti­on as­so­cia­ted with a sul­fi­dic flu­id flow from a deep-sea mud vol­ca­no. En­vi­ron­men­tal Mi­cro­bio­lo­gy 13: 495-505. doi:10.1111/j.1462-2920.2010.02353.x
  Grün­ke, S., J. Fel­den, A. Licht­schlag, A.-C. Girnth, D. de Beer, F. Wenz­hö­fer, A. Boe­ti­us (2011) Ni­che dif­fe­ren­tia­ti­on among mat-for­ming, sul­fi­de-oxi­di­zing bac­te­ria at cold seeps of the Nile Deep Sea Fan (Eas­tern Me­di­ter­ra­ne­an Sea). Geo­bio­lo­gy 9, 330-348. doi:10.1111/j.1472-4669.2011.00281.x
  Hankeln, W., Wendel, N. J., Gerken, J., Waldmann, J., But­ti­gieg, P. L., Kostadinov, I., Kottmann, R., Yilmaz, P., Glöckner, F. O. (2011) CD­in­Fu­si­on – Sub­mis­si­on-Re­a­dy, On-Line In­te­gra­ti­on of Se­quence and Con­textu­al Data. PLoS ONE, 6(9): e24797. doi:10.1371/journal.pone.0024797.
  Holler, T., G. We­ge­ner, H. Niemann, C. Deusner, T.G. Ferdelman, A. Boe­ti­us, B. Brunner, F. Widdel (2011) Car­bon and sul­fur back flux du­ring an­ae­ro­bic mi­cro­bi­al oxi­da­ti­on of me­tha­ne and cou­p­led sul­fa­te re­duc­tion. Proc. Natl. Acad. Sci. 108, E1484–E1490. doi:10.1073/pnas.1106032108
  Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.-U. Hinrichs, A. Teske, A. Boe­ti­us, G. We­ge­ner (2011) Ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne mi­cro­bi­al con­sor­tia. ISME Jour­nal 5(12): 1946-1956. doi:10.1038/ismej.2011.77.
  Kostadinov, I., R. Kottmann, A. Ra­met­te, J. Waldmann, P.L. But­ti­gieg, F.O. Glöckner (2011) Quan­ti­fy­ing the ef­fect of en­vi­ron­ment sta­bi­li­ty on the tran­scrip­ti­on fac­tor re­per­toire of ma­ri­ne mi­cro­bes. Mi­cro­bi­al In­for­ma­tics and Ex­pe­ri­men­ta­ti­on 1, 9. doi:10.1186/2042-5783-1-9
  Ra­met­te, A., M. Frapolli, M. Fischer-Le Saux, C. Gruffaz, J.-M. Meyer, G. Défago, L. Sutra, Y. Moënne-Loccoz (2011) Pseu­do­mo­nas pro­te­gens sp. nov., wi­de­s­pre­ad plant-pro­tec­ting bac­te­ria pro­du­cing the bio­con­trol com­pounds 2,4-di­a­ce­tyl­phlo­rog­lu­ci­nol and pyo­lu­teo­rin. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 34,180-188. doi:10.1016/j.syapm.2010.10.005
  Ritt, B., C. Pierre, O. Gauthier, F. Wenz­hö­fer, A. Boe­ti­us, J. Sarrazin (2011) Di­ver­si­ty and dis­tri­bu­ti­on of cold-seep fau­na as­so­cia­ted with dif­fe­rent geo­lo­gi­cal and en­vi­ron­men­tal set­tings at mud vol­ca­noes and pock­marks of the Nile Deep-Sea Fan. Ma­ri­ne Bio­lo­gy 158, 1187-1210. doi:10.1007/s00227-011-1679-6
  Ros­sel, P.E., M. Elvert, A. Ra­met­te, A. Boe­ti­us, K.-U. Hinrichs (2011) Fac­tors con­trol­ling the dis­tri­bu­ti­on of an­ae­ro­bic me­tha­notro­phic com­mu­nities in ma­ri­ne en­vi­ron­ments: Evi­dence from in­tact po­lar mem­bra­ne li­pids. Geochi­mi­ca et Cos­mochi­mi­ca Acta 75,164-184. doi:10.1016/j.gca.2010.09.031
  Schauer, R., H. Røy, N. Augustin, H.-H. Gennerich, M. Peters, F. Wenz­hoefer, R. Amann, A. Meyerdierks (2011) Bac­te­ri­al sul­fur cy­cling shapes mi­cro­bi­al com­mu­nities in sur­face se­di­ments of an ul­tra­ma­fic hydro­ther­mal vent field. En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, 2633-2648. doi:10.1111/j.1462-2920.2011.02530.x
  Schneider von Deimling, J., G. Rehder, J. Greinert, D.F. McGinnnis, A. Boe­ti­us, P. Linke (2011) Quan­ti­fi­ca­ti­on of seep-re­la­ted me­tha­ne gas emis­si­ons at Tom­me­li­ten, North Sea. Con­ti­nen­tal Shelf Re­se­arch 31, 867-878. doi:10.1016/j.csr.2011.02.012
  Schött­ner, S.*, B. Pfitz­ner*, S. Grün­ke, M. Rasheed, C. Wild, A. Ra­met­te (2011) Dri­vers of bac­te­ri­al di­ver­si­ty dy­na­mics in per­me­able car­bo­na­te and si­li­ca­te co­ral reef sands from the Red Sea. En­vi­ron­men­tal Mi­cro­bio­lo­gy 13, 1815-1826. doi:10.1111/j.1462-2920.2011.02494.x
  Schubert, C.J., F. Vazquez, T. Lösekann-Behrens, K. Knittel, M. Tonolla, A. Boetius (2011) Evi­dence for an­ae­ro­bic oxi­da­ti­on of me­tha­ne in se­di­ments of a freshwa­ter sys­tem (Lago di Ca­da­g­no). FEMS Mi­cro­bio­lo­gy Eco­lo­gy 76, 26-38. doi:10.1111/j.1574-6941.2010.01036.x
  Zielinski, F.U., H.-H. Gennerich, C. Borowski, F. Wenz­hö­fer, N. Dubilier (2011) In situ mea­su­re­ments of hy­dro­gen sul­fi­de, oxy­gen, and tem­pe­ra­tu­re in dif­fu­se fluids of an ul­tra­ma­fic-hosted hydro­ther­mal vent field (Lo­gat­chev, 14°45’N, Mid-At­lan­tic Ridge: Im­pli­ca­ti­ons for che­mo­sym­bio­tic ba­thy­mo­dio­lin mus­sels. Geo­che­mis­try, Geo­phy­sics, Geo­sys­tems 12: Q0A­E04. doi:10.1029/2011GC003632
  Zin­ger, L.*, L.A. Amaral-Zettler, J.A. Fuhrman, M.C. Horner-Devine, S.M. Huse, D.B. Mark Welch, J.B.H. Martiny, M. Sogin, A. Boe­ti­us, A. Ra­met­te (2011) Glo­bal pat­terns of bac­te­ri­al beta-di­ver­si­ty in seaf­loor and sea­wa­ter eco­sys­tems. PLoS ONE 6: e24570. doi:10.1371/journal.pone.0024570
  Zin­ger, L.*, A. Go­bet*, T. Pommier (2011) Two de­ca­des of de­scri­bing the un­se­en ma­jo­ri­ty of aqua­tic mi­cro­bi­al di­ver­si­ty. Mole­cu­lar Eco­lo­gy 21(8): 1878-1896. doi:10.1111/j.1365-294X.2011.05362.x.

 

2010 Alonso, C., P. Gómez-Pereira, A. Ra­met­te, L. Ortega, B.M. Fuchs, R. Amann (2010) Mul­ti­le­vel ana­ly­sis of the bac­te­ri­al di­ver­si­ty along the en­vi­ron­men­tal gra­di­ent Río de la Pla­ta-South At­lan­tic Oce­an. Aqua­tic Mi­cro­bi­al Eco­lo­gy 61, 57–72. doi:10.3354/ame01439
  Aquilina, A., N.J. Knab, K. Knittel, G. Kaur, A. Geissler, S.P. Kelly, H. Fossing, C.S. Boot, R.J. Parkes, R.A. Mills, A. Boe­ti­us, J.R. Lloyd, R.D. Pancost (2010) Bio­mar­ker in­di­ca­tors for an­ae­ro­bic oxi­di­zers of me­tha­ne in bra­ckish-ma­ri­ne se­di­ments with dif­fu­si­ve me­tha­ne flu­xes. Or­ga­nic Geo­che­mis­try 41, 414-426. doi:10.1016/j.orggeochem.2009.09.009
  Dale, A.W., S. Sommer, M. Haeckel, K. Wallmann, P. Linke, G. We­ge­ner, O. Pfannkuche (2010) Pa­thways and re­gu­la­ti­on of car­bon, sul­fur and en­er­gy trans­fer in ma­ri­ne se­di­ments over­ly­ing me­tha­ne gas hy­dra­tes on the Opoua­we Bank (New Ze­a­land). Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, 5763-5784. doi:10.1016/j.gca.2010.06.038
  Dun­ker, R., H. Røy*, B.B. Jørgensen (2010) Tem­pe­ra­tu­re re­gu­la­ti­on of gli­ding mo­ti­li­ty in fil­amen­tous sul­fur bac­te­ria, Beggia­toa spp. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, 234-242. doi:10.1111/j.1574-6941.2010.00887.x
  Fel­den, J., F. Wenz­hö­fer, T. Feseker, A. Boe­ti­us (2010) Trans­port and con­sump­ti­on of oxy­gen and me­tha­ne in dif­fe­rent ha­bi­tats of the Hå­kon Mos­by Mud Vol­ca­no (HMMV). Lim­no­lo­gy and Ocea­no­gra­phy 55, 2366-2380. doi:10.4319/lo.2010.55.6.2366
  Fi­scher, J.P., F. Wenz­hö­fer (2010) A no­vel pla­nar op­to­de set­up for con­cur­rent oxy­gen and light field ima­ging: Ap­p­li­ca­ti­on to a bent­hic pho­to­tro­phic com­mu­ni­ty. Lim­no­lo­gy and Ocea­no­gra­phy Me­thods 8, 254-268. doi:10.4319/lom.2010.8.254
  Go­bet, A., C. Quince, A. Ra­met­te (2010) Mul­ti­va­ria­te Cu­toff Ana­ly­sis (Mul­ti­Co­LA) of lar­ge com­mu­ni­ty da­ta­sets. Nu­cleic Acids Re­se­arch 38, e155. doi:10.1093/nar/gkq545
  Grün­ke, S., A. Licht­schlag, D. de Beer, M. Kuypers, T. Lösekann-Behrens, A. Ra­met­te, A. Boe­ti­us (2010) No­vel ob­ser­va­tions of Thi­o­bac­te­ri­um, a sul­fur-sto­ring Gam­ma­pro­te­ob­ac­te­ri­um pro­du­cing ge­la­ti­nous mats. ISME Jour­nal 4, 1031-1043. doi:10.1038/ismej.2010.23
  #Jes­sen, G.L., S. Pantoja, M.A. Gutiérrez, R.A. Quiñones, R.R. González, J. Sellanes, M.Y. Kellermann, K.-U. Hinrichs (2010) Me­tha­ne in shal­low cold seeps at Mocha Is­land off cen­tral Chi­le. Con­ti­nen­tal Shelf Re­se­arch 31(6), 574-581. doi:10.1016/j.csr.2010.12.012.
  Jørgensen, B.B., R. Dun­ker, S. Grün­ke, H. Røy (2010) Fil­amen­tous sul­fur bac­te­ria, Beggia­toa spp., in arc­tic ma­ri­ne se­di­ments (Sval­bard, 79°N). FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, 500-513. doi:10.1111/j.1574-6941.2010.00918.x
  Joye, S.B., M.W. Bowles, V.A. Samarkin, K.S. Hunter, H. Nie­mann(2010) Bio­geo­che­mi­cal si­gna­tu­res and mi­cro­bi­al ac­tivi­ty of dif­fe­rent cold-seep ha­bi­tats along the Gulf of Me­xi­co deep slo­pe. Deep Sea Re­se­arch II 57, 1990-2001. doi:10.1016/j.dsr2.2010.06.001
  Knief, C., A. Ra­met­te, L. Frances, C. Alonso-Blanco, J.A. Vorholt (2010) Site and plant spe­cies are im­portant de­ter­mi­nants of the Me­thy­lo­bac­te­ri­um com­mu­ni­ty com­po­si­ti­on in the plant phyl­lo­s­phe­re. ISME Jour­nal 4, 719–728. doi:10.1038/ismej.2010.9
  Koop-Ja­kob­sen, K.#, A.E. Giblin (2010) The ef­fect of in­crea­sed ni­tra­te loa­ding on ni­tra­te re­duc­tion via de­ni­tri­fi­ca­ti­on and DNRA in salt mar­sh se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy 55, 789-802. doi:10.1.1.517.7294
  Licht­schlag, A., J. Fel­den, V. Brüchert, A. Boe­ti­us, D. de Beer (2010) Geo­che­mi­cal pro­ces­ses and che­mo­syn­the­tic pri­ma­ry pro­duc­tion in dif­fe­rent thio­tro­phic mats of the Hå­kon Mos­by mud vol­ca­no (Ba­rents Sea). Lim­no­lo­gy and Ocea­no­gra­phy 55, 931-949. doi:10.4319/lo.2010.55.2.0931
  Licht­schlag, A., J. Fel­den, F. Wenz­hö­fer, F. Schubotz, T. Ertefai, A. Boe­ti­us, D. de Beer (2010) Me­tha­ne and sul­fi­de flu­xes in per­ma­nent an­oxia: In situ stu­dies at the Dvu­re­chens­kii mud vol­ca­no (Sorokin Trough, Black Sea). Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, 5002-5018. doi:10.4319/lo.2010.55.2.0931
  Lombard, F., D. Eloire, A. Go­bet#, L. Stemmann, J.R. Dolan, A. Sciandra, G. Gorsky (2010) Ex­pe­ri­men­tal and mo­de­ling evi­dence of ap­pen­di­cu­la­ri­an-ci­lia­te in­ter­ac­tions. Lim­no­lo­gy and Ocea­no­gra­phy 55, 77-90. doi:10.4319/lo.2010.55.1.0077
  López-López, A., P. Yarza, M. Richter, A. Suárez-Suárez, J. Antón, H. Nie­mann*, R. Rosselló-Móra (2010) Ex­tre­me­ly ha­lo­phi­lic mi­cro­bi­al com­mu­nities in an­ae­ro­bic se­di­ments from a so­lar sal­tern. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 2, 258-271. doi:10.1111/j.1758-2229.2009.00108.x
  #Mau, S., M.B. Heintz, F.S. Kinnaman, D.L. Valentine (2010) Com­po­si­tio­nal va­ria­bi­li­ty and air-sea flux of etha­ne and pro­pa­ne in the plu­me of a lar­ge, ma­ri­ne seep field near Coal Oil Point, CA. Spe­cial Is­sue Pro­cee­dings of the 9th In­ter­na­tio­nal Con­fe­rence in Ma­ri­ne Se­di­ments, Geo-Ma­ri­ne Let­ters 30, 367-378. doi:10.1007/s00367-010-0185-z
  Meziti, A., A. Ra­met­te, E. Mente, K. Kormas (2010) Tem­po­ral shifts of the Nor­way lobs­ter (Ne­phrops nor­ve­gi­cus) gut bac­te­ri­al com­mu­nities. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 74, 472–484. doi:10.1111/j.1574-6941.2010.00964.x
  Orcutt, B.N., S.B. Joye, S. Kleindienst, K. Knittel, A. Ra­met­te, A. Reitz, V. Samarkin, T. Treude, A. Boe­ti­us (2010) Im­pact of na­tu­ral oil and hig­her hy­dro­c­ar­bons on mi­cro­bi­al di­ver­si­ty, dis­tri­bu­ti­on and ac­tivi­ty in Gulf of Me­xi­co cold-seep se­di­ments. Deep-Sea Re­se­arch II 57, 2008–2021. doi:10.1016/j.dsr2.2010.05.014
  Petersen, J.M., A. Ra­met­te, C. Lott, M.A. Cambon-Bonavita, M. Zbinden, N. Dubilier (2010) Dual sym­bio­sis of the vent shrimp Ri­mi­ca­ris exo­cu­la­ta with fil­amen­tous gam­ma- and ep­si­lon­pro­te­ob­ac­te­ria at four Mid-At­lan­tic Ridge hydro­ther­mal vent fiel­ds. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, 2204–2218. doi:10.1111/j.1462-2920.2009.02129.x
  San­til­la­no, D., A. Boe­ti­us, A. Ra­met­te (2010) Im­pro­ved dsrA-ba­sed Ter­mi­nal Re­stric­tion Frag­ment Length Po­ly­mor­phism ana­ly­sis of sul­fa­te-re­du­cing bac­te­ria. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 76, 5308-5311. doi:10.1128/​AEM.03004-09
  Sauvadet, A.L., A. Go­bet#, L. Guillou (2010) Com­pa­ra­ti­ve ana­ly­sis bet­ween pro­tist com­mu­nities from the deep-sea pel­agic eco­sys­tem and spe­ci­fic deep hydro­ther­mal ha­bi­tats. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, 2946-2964. doi:10.1111/j.1462-2920.2010.02272.x
  Schauer, R., C. Bi­en­hold, A. Ra­met­te, J. Harder (2010) Bac­te­ri­al di­ver­si­ty and bio­geo­gra­phy in deep-sea sur­face se­di­ments of the South At­lan­tic Oce­an. ISME Jour­nal 4, 159–170. doi:10.1038/ismej.2009.106
  Schläppy, M.L., S. Schött­ner, G. Lavik, M.M.M. Kuypers, D. de Beer, F. Hoffmann (2010) Evi­dence of ni­tri­fi­ca­ti­on and de­ni­tri­fi­ca­ti­on in high and low mi­cro­bi­al ab­un­dance spon­ges. Ma­ri­ne Bio­lo­gy 157, 593-602. doi:10.1007/s00227-009-1344-5
  Sommer, S., P. Linke, O. Pfannkuche, H. Nie­mann*, T. Treu­de* (2010) Bent­hic re­spi­ra­ti­on in a seep ha­bi­tat do­mi­na­ted by den­se beds of am­pha­re­tid po­ly­chae­tes at the Hi­kur­an­gi Mar­gin (New Ze­a­land). Ma­ri­ne Geo­lo­gy 272, 223-232. doi:10.1016/j.margeo.2009.06.003
  Verna, C., A. Ra­met­te, H. Wiklund, T.G. Dahlgren, A.G. Glover, F. Gaill, N. Dubilier (2010) High sym­bi­ont di­ver­si­ty in the bone-ea­ting worm Ose­dax mu­cof­lo­ris from shal­low wha­le-falls in the North At­lan­tic. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, 2355– 2370. doi:10.1111/j.1462-2920.2010.02299.x
  Wei, C.-L., G.T. Rowe, E. Escobar-Briones, U, T. Solt­we­del, M.J. Caley, Y. Soliman, F. Huettmann, F. Qu, Z. Yu, C.R. Pitcher, R.L. Haedrich, M.K. Wicksten, M.A. Rex, J.G. Baguley, J. Sharma, R. Danovaro, I.R. MacDonald, C.C. Nunnally, J.W. Deming, P. Montagna, M. Lévesque, J.M. Weslawski, M. Wlodarska-Kowalczuk, B.S. Ingole, B.J. Bett, D.S.M. Billett, A. Yool, B.A. Bluhm, K. Iken, B.E. Narayanaswamy (2010) Glo­bal pat­terns and pre­dic­tions of seaf­loor bio­mass using Ran­dom Fo­rests. PLoS ONE 5, e15323. doi:10.1371/journal.pone.0015323

 

2009Beck, A., Janssen, F., Polerecky, L., Herlory, O., de Beer, D. (2009) Pho­to­tro­phic bio­film ac­tivi­ty and dy­na­mics of di­ur­nal Cd cy­cling in a freshwa­ter stream. En­vi­ron­men­tal Sci­ence and Tech­no­lo­gy 43: 7245–7251.
Berg, P., R.N. Glud, A. Hume, H. Stahl, K. Oguri, V. Meyer and H. Kitazato (2009). Eddy cor­re­la­ti­on mea­su­re­ments of oxy­gen uptake in deep oce­an se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy-Me­thods 7, 576-584.
Böer, S.I., C. Arnosti, J.E.E. van Beusekom and A. Boetius (2009). Tem­po­ral va­ria­ti­ons in mi­cro­bi­al ac­tivi­ties and car­bon tur­no­ver in sub­ti­dal san­dy se­di­ments. Bio­geo­sci­en­ces 6, 1149-1165.
Böer, S.I., S.I.C. Hedtkamp, J.E.E. van Beusekom, J.A. Fuhrman, A. Boetius and A. Ramette (2009). Time- and se­di­ment depth-re­la­ted va­ria­ti­ons in bac­te­ri­al di­ver­si­ty and com­mu­ni­ty struc­tu­re in sub­ti­dal sands. The ISME Jour­nal 3, 780-791.
Boetius, A. and F. Wenzhöfer (2009). In situ tech­no­lo­gies for stu­dy­ing deep-sea hot­spot eco­sys­tems. Ocea­no­gra­phy 22, 177-177.
Cambon-Bonavita, M.A., T. Nadalig, E. Roussel, E. Delage, S. Duperron, J.C. Caprais, A. Boetius and M. Sibuet (2009). Di­ver­si­ty and dis­tri­bu­ti­on of me­tha­ne-oxi­di­zing mi­cro­bi­al com­mu­nities as­so­cia­ted with dif­fe­rent fau­nal as­sem­bla­ges in a gi­ant pock­mark of the Ga­bon con­ti­nen­tal mar­gin. Deep-Sea Re­se­arch II 56, 2248-2258.
D'Hondt, S., A.J. Spivack, R. Pockalny, T.G. Ferdelman, J.P. Fischer, J. Kallmeyer, L.J. Abrams, D.C. Smith, D. Graham, F. Hasiuk, H. Schrum and A.M. Stancin (2009). Sub­seaf­loor se­di­men­ta­ry life in the South Pa­ci­fic Gyre. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces of the United Sta­tes of Ame­ri­ca 106, 11651-11656.
Duperron, S., D. de Beer, M. Zbinden, A. Boetius, V. Schipani, N. Kahil and F. Gaill (2009). Mole­cu­lar cha­rac­te­riza­t­i­on of bac­te­ria as­so­cia­ted with the tro­pho­so­me and the tube of La­mel­li­bra­chia sp., a si­bog­li­nid an­ne­l­id from cold seeps in the eas­tern Me­di­ter­ra­ne­an. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 69, 395-409.
Fischer, J.P., T.G. Ferdelman, S. D'Hondt, H. Røy and F. Wenzhöfer (2009). Oxy­gen pe­ne­tra­ti­on deep into the se­di­ment of the South Pa­ci­fic gyre. Bio­geo­sci­en­ces 6, 1467-1478.
Foucher, J.P., G.K. Westbrook, A. Boetius, S. Ceramicola, S. Dupré, J. Mascle, J. Mienert, O. Pfannkuche, C. Pierre and D. Praeg (2009). Struc­tu­re and dri­vers of cold seep eco­sys­tems. Ocea­no­gra­phy 22, 92-109.
Glud, R.N., H. Stahl, P. Berg, F. Wenzhöfer, K. Oguri and H. Kitazato (2009). In situ mi­cro­s­ca­le va­ria­ti­on in dis­tri­bu­ti­on and con­sump­ti­on of O-2: A case stu­dy from a deep oce­an mar­gin se­di­ment (Sa­ga­mi Bay, Ja­pan). Lim­no­lo­gy and Ocea­no­gra­phy 54, 1-12.
Glud, R.N., B. Thamdrup, H. Stahl, F. Wenzhöfer, A. Glud, H. Nomaki, K. Oguri, N.P. Revsbech and H. Kitazato (2009). Ni­tro­gen cy­cling in a deep oce­an mar­gin se­di­ment (Sa­ga­mi Bay, Ja­pan). Lim­no­lo­gy and Ocea­no­gra­phy 54, 723-734.
Hoffmann, F., R. Radax, D. Woebken, M. Holtappels, G. Lavik, H.T. Rapp, M.-L. Schläppy, C. Schleper and M.M.M. Kuypers (2009). Com­plex ni­tro­gen cy­cling in the spon­ge Geo­dia bar­ret­ti. En­vi­ron­men­tal Mi­cro­bio­lo­gy 11, 2228-2243.
Holler, T., G. Wegener, K. Knittel, A. Boetius, B. Brunner, M. Kuypers and F. Widdel (2009). Sub­stan­ti­al 13C/​12C and D/​H frac­tio­na­ti­on du­ring an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne con­sor­tia en­ri­ched in vi­tro. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 1, 370-376.
Huguen, C., J.P. Foucher, J. Mascle, H. Ondréas, M. Thouement, S. Gontharet, A. Stadnitskaia, C. Pierre, G. Bayon, L. Loncke, A. Boetius, I. Bouloubassi, G. de Lange, J.C. Caprais, Y. Fouquet, J. Woodside, S. Dupré and the NAUTINIL Scientific Party (2009). Me­nes cal­de­ra, a high­ly ac­tive site of bri­ne see­page in the Eas­tern Me­di­ter­ra­ne­an sea: "In situ" ob­ser­va­tions from the NAU­TI­NIL ex­pe­di­ti­on (2003). Ma­ri­ne Geo­lo­gy 261, 138-152.
Jansen, S., E. Walpersdorf, U. Werner, M. Billerbeck, M.E. Böttcher and D. de Beer (2009). Func­tio­n­ing of in­terti­dal flats in­fer­red from tem­po­ral and spa­ti­al dy­na­mics of O2, H2S and pH in their sur­face se­di­ment. Oce­an Dy­na­mics 59, 317-332.
Kanzog, C. and A. Ramette (2009). Mi­cro­bi­al co­lo­ni­sa­ti­on of ar­ti­fi­ci­al and deep-sea se­di­ments in the Arc­tic Oce­an. Ma­ri­ne Eco­lo­gy 30, 391-404.
Knittel, K. and A. Boetius (2009). An­ae­ro­bic oxi­da­ti­on of me­tha­ne: pro­gress with an un­k­nown pro­cess. An­nu­al Re­view of Mi­cro­bio­lo­gy 63, 311-334.
López-López, A., P. Yarza, M. Richter, A. Suárez-Suárez, H. Niemann, J. Antón and R. Rosselló-Móra (2009). Ex­tre­me­ly ha­lo­phi­lic mi­cro­bi­al com­mu­nities in an­ae­ro­bic se­di­ments from a so­lar sal­tern. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports, doi 10.1111/​j.1758-2229.2009.00108.x.
Naumann, M.S., C. Richter, M. el-Zibdah and C. Wild (2009). Co­ral mu­cus as an ef­fi­ci­ent trap for pi­co­plank­to­nic cya­no­bac­te­ria -im­pli­ca­ti­ons for pel­agic-bent­hic cou­pling in the reef eco­sys­tem. Ma­ri­ne Eco­lo­gy Pro­gress Se­ries 385, 65-76.
Niemann, H., D. Fischer, D. Graffe, K. Knittel, A. Montiel, O. Heilmayer, K. Nöthen, T. Pape, S. Kasten, G. Bohrmann, A. Boetius and J. Gutt (2009). Bio­geo­che­mis­try of a low-ac­tivi­ty cold seep in the Lar­sen B area, wes­tern Wed­dell Sea, Ant­arc­tica. Bio­geo­sci­en­ces 6, 2383-2395.
Omoregie, E.O., H. Niemann, V. Mastalerz, G.J. de Lange, A. Stadnitskaia, J. Mascle, J.-P. Foucher and A. Boetius (2009). Mi­cro­bi­al me­tha­ne oxi­da­ti­on and sul­fa­te re­duc­tion at cold seeps of the deep Eas­tern Me­di­ter­ra­ne­an Sea. Ma­ri­ne Geo­lo­gy 261, 114-127.
Ramette, A. (2009). Quan­ti­ta­ti­ve com­mu­ni­ty fin­ger­prin­ting me­thods for esti­ma­ting the ab­un­dance of ope­ra­tio­nal ta­xo­no­mic units in na­tu­ral mi­cro­bi­al com­mu­nities. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 75, 2495-2505.
Ramette, A., J.M. Tiedje and A. Boetius (2009). Im­pact of space, time and com­plex en­vi­ron­ments on mi­cro­bi­al com­mu­nities. Cli­ni­cal Mi­cro­bio­lo­gy and In­fec­tion 15, 60-62.
Røy, H., K. Vopel, M. Huettel and B.B. Jørgensen (2009). Sul­fi­de as­si­mi­la­ti­on by ec­to­sym­bi­onts of the ses­si­le ci­lia­te, Zootham­ni­um ni­ve­um. Ma­ri­ne Bio­lo­gy 156, 669-677.
Schläppy, M.L., S.I. Schöttner, G. Lavik, M.M.M. Kuypers, D. de Beer and F. Hoffmann (2009). Evi­dence of ni­tri­fi­ca­ti­on and de­ni­tri­fi­ca­ti­on in high and low mi­cro­bi­al ab­un­dance spon­ges. Ma­ri­ne Bio­lo­gy, doi 10.1007/​s00227-009-1344-5.
Schöttner, S., F. Hoffmann, C. Wild, H.T. Rapp, A. Boetius and A. Ramette (2009). In­ter- and in­tra- ha­bi­tat bac­te­ri­al di­ver­si­ty as­so­cia­ted with cold-wa­ter co­rals. The ISME Jour­nal 3, 756-759.
Sweetman, A.K., S. Sommer, O. Pfannkuche and U. Witte (2009). Re­tar­ded re­s­pon­se by ma­cro­fau­na-size fo­ra­mi­ni­fe­ra to phy­to­de­t­ri­tus in a deep Nor­we­gi­an fjord. Jour­nal of Fo­ra­mi­ni­fe­ral Re­se­arch 39, 15-22.
Treude, T., C.R. Smith, F. Wenzhöfer, E. Carney, A.F. Bernardino, A.K. Hannides, M. Krüger and A. Boetius (2009). Bio­geo­che­mis­try of a deep-sea wha­le fall: sul­fa­te re­duc­tion, sul­fi­de ef­f­lux and me­tha­no­ge­ne­sis. Ma­ri­ne Eco­lo­gy-Pro­gress Se­ries 382, 1-21.
Vanreusel, A., A.C. Andersen, A. Boetius, D. Connelly, M.R. Cunha, C. Decker, A. Hilario, K.A. Kormas, L. Maignien, K. Olu, M. Pachiadaki, B. Ritt, C. Rodrigues, J. Sarrazin, P. Tyler, S. van Gaever and H. Vanneste (2009). Bio­di­ver­si­ty of cold seep eco­sys­tems along the Eu­ro­pean mar­gins. Ocea­no­gra­phy 22, 110-127.
Weaver, P.P.E., A. Boetius, R. Danovaro, A. Freiwald, V. Gunn, S. Heussner, T. Morato, I. Schewe and S. van den Hove (2009). The fu­ture of in­te­gra­ted deep-sea re­se­arch in Eu­ro­pe The HER­MIO­NE Pro­ject. Ocea­no­gra­phy 22, 178-191.
Wegener, G. and A. Boetius (2009). An ex­pe­ri­men­tal stu­dy on short-term chan­ges in the an­ae­ro­bic oxi­da­ti­on of me­tha­ne in re­s­pon­se to va­ry­ing me­tha­ne and sul­fa­te flu­xes. Bio­geo­sci­en­ces 6, 867–876.
Wehrmann, L.M., N.J. Knab, H. Pirlet, V. Unnithan, C. Wild and T.G. Ferdelman (2009). Car­bon mi­ne­ra­liza­t­i­on and car­bo­na­te pre­ser­va­ti­on in mo­dern cold-wa­ter co­ral reef se­di­ments on the Nor­we­gi­an shelf. Bio­geo­sci­en­ces 6, 663-680.
Wild, C., L.M. Wehrmann, C. Mayr, S.I. Schöttner, E. Allers und T. Lundälv (2009). Mi­cro­bi­al de­gra­da­ti­on of cold wa­ter co­ral-de­ri­ved or­ga­nic mat­ter – po­ten­ti­al im­pli­ca­ti­on for or­ga­nic C cy­cling in the wa­ter co­lumn above Tis­ler Reef. Aqua­tic Bio­lo­gy 7, 71-80.
Zhao, S., A. Ramette, G.L. Niu, H. Liu and N.Y. Zhou (2009). Ef­fects of ni­tro­ben­ze­ne con­ta­mi­na­ti­on and of bio­aug­men­ta­ti­on on ni­tri­fi­ca­ti­on and am­mo­nia-oxi­di­zing bac­te­ria in soil. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 70, 159-167.
2008Allers, E., C. Niesner, C. Wild, and J. Pernthaler (2008). Mi­cro­bes en­ri­ched in sea­wa­ter af­ter ad­di­ti­on of co­ral mu­cus. Appl. En­vi­ron. Mi­cro­bi­ol. 74:3274-3278.
Amaral-Zettler, L., J. Peplies, A. Ramette, B. Fuchs, W. Ludwig, and F. O. Glöckner (2008). Pro­cee­dings of the in­ter­na­tio­nal work­shop on Ri­bo­so­mal RNA tech­no­lo­gy, April 7–9, 2008, Bre­men, Ger­ma­ny. Syst. Appl. Mi­cro­bi­ol. 31:258-268.
Bacher, A., L. Polerecky, J.P. Fischer, K. Vamvakopoulos, D. de Beer und H. Jonkers (2008) Two-di­men­sio­nal map­ping of pho­to­pig­ments dis­tri­bu­ti­on and ac­tivi­ty of Chlo­rof­le­xus-like bac­te­ria in a hy­per­sa­li­ne mi­cro­bi­al mat. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 65, 434-448.
Bayer, K., A. Siegl, S. Schmitt, F. Hoffmann, and U. Hentschel (2008). Un­ra­vel­ling mi­cro­bi­al di­ver­si­ty and me­ta­bo­lism in ma­ri­ne spon­ges. Nova Acta Leo­pol­di­na 96: 71-78.
Dupré, S., G. Buffet, J. Mascle, J.-P. Foucher, S. Gauger, A. Boetius, C. Marfia, the AsterX Team, the Quest ROV Team und the BIONIL Scientific Party (2008). High-re­so­lu­ti­on map­ping of lar­ge gas emit­ting mud vol­ca­noes on the Egyp­ti­an con­ti­nen­tal mar­gin (Nile Deep Sea Fan) by AUV sur­veys. Ma­ri­ne Geo­phy­si­cal Re­se­ar­ches 29, 275-290.
Elvert, M., and H. Niemann (2008). Un­su­al ste­ro­id and ho­pano­id bio­syn­the­sis by ae­ro­bic me­tha­notro­phs at an ac­tive me­tha­ne-se­eping mud vol­ca­no. Org. Geo­chem. 39:167-177.
Engelen, B., K. Ziegelmüller, L. Wolf, B. Köpke, A. Gittel, T. Treude, S. Nakagawa, F. Inagaki, M. A. Lever, B. O. Steinsbu, and H. Cypionka (2008). Fluids from the ocea­nic crust sup­port mi­cro­bi­al ac­tivi­ties wi­t­hin the deep bio­s­phe­re. Geo­mi­cro­bi­ol. J. 25:56-66.
Evrard, V., P. L. M. Cook, B. Veuger, M. Huettel, and J. J. Middelburg (2008). Tra­c­ing in­cor­po­ra­ti­on and pa­thways of car­bon and ni­tro­gen in mi­cro­bi­al com­mu­nities of pho­tic sub­ti­dal sands. Aquat. Mi­crob. Ecol. 53:257-269.
Hoffmann, F., H. Røy, K. Bayer, U. Hentschel, M. Pfannkuchen, F. Brümmer, and D. de Beer (2008). Oxy­gen dy­na­mics and trans­port in the Me­di­ter­ra­ne­an spon­ge Ap­ly­si­na aero­pho­ba. Mar. Biol. 153:1257-1264.
Jacobs, J. L., A. C. Fasi, A. Ramette, J. J. Smith, R. Hammerschmidt, and G. W. Sundin (2008). Iden­ti­fi­ca­ti­on and oni­on pa­tho­ge­ni­ci­ty of Burk­hol­de­ria ce­pa­cia com­plex iso­la­tes from the oni­on rhi­zo­s­phe­re and oni­on field soil. Appl. En­vi­ron. Mi­cro­bi­ol. 74:3121-3129.
Kamp, A., H. Røy, and H. N. Schulz-Vogt (2008). Vi­deo-sup­por­ted ana­ly­sis of Beggia­toa fil­ament growth, bre­a­ka­ge, and mo­ve­ment. Mi­crob. Ecol. 56:484-491.
Kanzog C., A. Ramette, N. V. Quéric, and M. Klages (2008). Re­s­pon­se of bent­hic mi­cro­bi­al com­mu­nities to chi­tin en­rich­ment: an in situ stu­dy in the deep Arc­tic Oce­an. Po­lar Biol. 32:105-112.
Le Gall, F., F. Rigaut-Jalabert, D. Marie, L. Garczareck, M. Viprey, A. Godet, and D. Vaulot (2008). Pi­co­plank­ton di­ver­si­ty in the South-East Pa­ci­fic Oce­an from cul­tu­res. Bio­geo­sci­en­ces 5:203-214.
Lösekann, T., A. Robador, H. Niemann, K. Knittel, A. Boetius, and N. Dubilier (2008). En­do­sym­bio­ses bet­ween bac­te­ria and deep-sea si­bog­li­nid tu­be­worms from an Arc­tic cold seep (Haa­kon Mos­by Mud Vol­ca­no, Ba­rents Sea). En­vi­ron. Mi­cro­bi­ol. 10.1111/​j.1462-2920.2008.01712.x
Niemann, H., and M. Elvert (2008). Dia­gnostic li­pid bio­mar­ker and sta­ble car­bon iso­to­pe si­gna­tu­res of mi­cro­bi­al com­mu­nities me­dia­ting the an­ae­ro­bic oxi­da­ti­on of me­tha­ne with sulp­ha­te. Org. Geo­chem. 39:1668-1677.
Omoregie, E. O., V. Mastalerz, G. de Lange, K. L. Straub, A. Kappler, H. Røy, A. Stadnitskaia, J. Foucher, and A. Boetius (2008). Bio­geo­che­mis­try and com­mu­ni­ty com­po­si­ti­on of iron- and sul­fur-pre­ci­pi­ta­ting mi­cro­bi­al mats at the Chefren Mud Vol­ca­no (Nile Deep Sea Fan, Eas­tern Me­di­ter­ra­ne­an) Appl. En­vi­ron. Mi­cro­bi­ol. 74:3198-3215.
Orcutt, B., V. Samarkin, A. Boetius, and S. Joye (2008). On the re­la­ti­ons­hip bet­ween me­tha­ne pro­duc­tion and oxi­da­ti­on by an­ae­ro­bic me­tha­notro­phic com­mu­nities from cold seeps of the Gulf of Me­xi­co. En­vi­ron. Mi­cro­bi­ol. 10:1108–1117.
Rossel, P. E., J. S. Lipp, H. F. Fredricks, J. A. Arnds, A. Boetius, M. Elvert, and K.-U. Hinrichs (2008). In­tact po­lar li­pids of an­ae­ro­bic me­tha­notro­phic ar­chaea and as­so­cia­ted bac­te­ria. Org. Geo­chem. doi:10.1016/​j.org­geo­chem.2008.02.021
Røy, H., J. S. Lee, S. Jansen, and D. de Beer (2008). Tide-dri­ven deep pore¬wa­ter flow in in­terti­dal sand flats. Lim­nol. Ocea­no­gr. 53:1521-1530.
Sweetman, A. K., and U. Witte (2008). Re­s­pon­se of an abys­sal ma­cro­fau­nal com­mu­ni­ty to a phy­to­de­tri­tal pul­se. Mar. Ecol. Prog. Ser. 355:73-84.
Sweetman, A. K., and U. Witte (2008). Ma­cro­fau­nal re­s­pon­se to phy­to­de­t­ri­tus in a ba­thy­al Nor­we­gi­an fjord. Deep-Sea Res. I 55:1503-1514.
Wegener, G., H. Niemann, M. Elvert, K.-U. Hinrichs, and A. Boetius (2008). As­si­mi­la­ti­on of me­tha­ne and in­or­ga­nic car­bon by mi­cro­bi­al com­mu­nities me­dia­ting the an­ae­ro­bic oxi­da­ti­on of me­tha­ne. En­vi­ron. Mi­cro­bi­ol. 10:2287-2298.
Wegener, G., M. Shovitri, K. Knittel, H. Niemann, M. Hovland, and A. Boetius (2008). Bio­geo­che­mi­cal pro­ces­ses and mi­cro­bi­al di­ver­si­ty of the Gull­faks and Tom­me­li­ten me­tha­ne seeps (Nort­hern North Sea). Bio­geo­sci­en­ces. 5:1127–1144.
Wild, C., C. Mayr, L. M. Wehrmann, S. Schöttner, M. Naumann, F. Hoffmann, and H. T. Rapp (2008). Or­ga­nic mat­ter re­lease by cold wa­ter co­rals and its im­pli­ca­ti­on for fau­na-mi­cro­be in­ter­ac­tion. Mar. Ecol. Prog. Ser. 372:67-75.
2007Bachar, A., E. Omoregie, R. de Wit, and H. Jonkers (2007). Di­ver­si­ty and func­tion of Chlo­rof­le­xus-like bac­te­ria in a hy­per­sa­li­ne mi­cro­bi­al mat: phy­lo­ge­ne­tic cha­rac­te­riza­t­i­on and im­pact on oxy­gen cy­cling. Appl. En­vi­ron. Mi­cro­bi­ol. 73 :3975-3983.
Berg, P., H. Røy, and P. Wiberg (2007). Eddy cor­re­la­ti­on flux mea­su­re­ments – the se­di­ment sur­face area that cont­ri­bu­tes to the flux. Lim­nol. Ocea­no­gr. 52:1672–1684.
Billerbeck, M., H. Røy, K. Bosselmann, and M. Huettel (2007). Bent­hic pho­to­syn­the­sis in sub­mer­ged Wad­den Sea in­terti­dal flats. Es­tu­ar. Co­ast. Shelf S. 71:704-716.
Cook, P., F. Wenzhöfer, F. Janssen, R. N. Glud, and M. Huettel (2007). Bent­hic so­lu­te ex­ch­an­ge and car­bon mi­ne­ra­liza­t­i­on in two shal­low sub­ti­dal san­dy se­di­ments: Ef­fect of ad­vec­tive pore-wa­ter ex­ch­an­ge. Lim­nol. Ocea­no­gr. 52:1943–1963.
Cook, P. L. M., B. Veuger, S. Böer, and J. J. Middelburg (2007). Ef­fect of nut­ri­ent avail­a­bi­li­ty on car­bon and ni­tro­gen in­cor­po­ra­ti­on and flows through bent­hic al­gae and bac­te­ria in near shore san­dy se­di­ment: A me­soscosm pul­se cha­se ex­pe­ri­ment. Aquat. Mi­crob. Ecol. 49: 165-180.
Dupré, S., J. M. Woodside, J. P. Foucher, G. de Lange, J. Mascle, A. Boetius, V. Mastalerz, A. Stadnitskaia, H. Ondréas, C. Huguen, H. Harmégnies, S. Gontharet, L. Loncke, E. Deville, H. Niemann, E. Omoregie, K. Olu-Le Roy, A. Fiala-Médioni, A. Dählmann, J. C. Caprais, A. Prinzhofer, M. Sibuet, C. Pierre, J. Sinninghe Damsté, and the NAUTINIL Scientific Party (2007). Seaf­loor geo­lo­gi­cal stu­dies above ac­tive gas chim­neys off Egypt (Cen­tral Nile Deep Sea Fan). Deep-Sea Res. Pt. I. 54:1146-1172.
Edgcomb, V. P., S. J. Molyneaux, S. Böer, C. O. Wirsen, M. Saito, M. S. Atkins, K. Lloyd, and A. Teske (2007). Sur­vi­val and growth of two he­te­ro­tro­phic hydro­ther­mal vent ar­chaea, Py­ro­coc­cus strain GB-D and Ther­mo­coc­cus fu­mi­colans un­der low pH and high sul­fi­de con­cen­tra­ti­ons in com­bi­na­ti­on with high tem­pe­ra­tu­re and pres­su­re re­gimes. Ex­tremo­phi­les. 11:329-342.
Huettel, M., P. L. M. Cook, F. Janssen, G. Lavik, and J. J. Middelburg (2007). Trans­port and de­gra­da­ti­on of a di­n­of­la­gel­la­te al­gal bloom in a per­me­able san­dy se­di­ment. Mar. Ecol-Prog. Ser. 340:139-153.
Jørgensen, B. B., and A. Boetius (2007). Feast and fa­mi­ne – mi­cro­bi­al life in the deep-sea bed. Nat. Rev. Mi­cro­bi­ol. 5:770-781.
Le Gall, F., F. Rigaut-Jalabert, D. Marie, L. Garczareck, M. Viprey, A. Gobet, and D. Vaulot (2007). Pi­co­plank­ton di­ver­si­ty in the South-East Pa­ci­fic Oce­an from cul­tu­res. Bio­geo­sci­en­ces Dis­cus­sions. 4:2699-2732.
Lösekann, T., K. Knittel, T. Nadalig, B. Fuchs, H. Niemann, A. Boetius, and R. Amann (2007). Di­ver­si­ty and ab­un­dance of ae­ro­bic and an­ae­ro­bic me­tha­ne oxi­di­zers at the Haa­kon Mos­by Mud Vol­ca­no, Ba­rents Sea. Appl. En­vi­ron. Mi­cro­bi­ol. 73:3348-3362.
Meysman, F. J. R., O. S. Galaktionov, P. L. M. Cook, F. Janssen, M. Huettel, and J. J. Middelburg (2007). Quan­ti­fy­ing bio­lo­gi­cal­ly and phy­si­cal­ly in­du­ced flow and tra­cer dy­na­mics in per­me­able se­di­ments. Bio­geo­sci­en­ces 4:627-646.
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Billerbeck, M., U. Werner, L. Polerecky, E. Walpersdorf, D. de Beer, and M. Huettel (2006). Sur­fi­ci­al and deep pore wa­ter cir­cu­la­ti­on go­verns spa­ti­al and tem­po­ral sca­les of nut­ri­ent re­cy­cling in in­terti­dal sand flat se­di­ment. Mar. Ecol-Prog. Ser. 326:61-76.
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Hoffmann, F., H. T. Rapp, and J. Reitner (2006). Mo­ni­to­ring mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on by fluo­re­scence in situ hy­bri­di­sa­ti­on du­ring cul­ti­va­ti­on of the ma­ri­ne cold-wa­ter spon­ge Geo­dia bar­ret­ti. Mar. Bio­tech­nol. 8:373-379.
Huettel, M., C. Wild, and S. Gonelli (2006). Mu­cus trap in co­ral reefs: for­ma­ti­on and tem­po­ral evo­lu­ti­on of par­ti­cle ag­gre­ga­tes cau­sed by co­ral mu­cus. Mar. Ecol. Prog. Ser. 307:69-84.
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Niemann, H., J. Duarte, C. Hensen, E. Omoregie, V. H. Magalhães, M. Elvert, L. M. Pinheiro, A. Kopf, and A. Boetius (2006). Mi­cro­bi­al me­tha­ne tur­no­ver at mud vol­ca­noes of the Gulf of Ca­diz. Geochim. Cos­mochim. Ac. 70:5336-5355.
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Palacios, C., M. Zbinden, A. R. Baco, T. Treude, C. R. Smith, F. Gaill, P. Lebaron, and A. Boetius (2006). Mi­cro­bi­al eco­lo­gy of deep-sea sun­ken wood: quan­ti­ta­ti­ve mea­su­re­ments of bac­te­ri­al bio­mass and cel­lu­l­oly­tic ac­tivi­ties. Cah. Mi­cro­bi­ol. Mar. 47:415-420.
Pape, T., F. Hoffmann, N. V. Quéric, K. von Juterzenka, J. Reitner, and W. Michaelis (2006). Den­se po­pu­la­ti­ons of Ar­chaea as­so­cia­ted with the de­mo­spon­ge Ten­to­ri­um se­mi­sub­e­ri­tes from Arc­tic deep wa­ters. Po­lar Biol. 29:662-667.
Payne, G. W., A. Ramette, H. L. Rose, A. J. Weightman, T. H. Jones, J. M. Tiedje, and E. Mahenthiralingam (2006). Ap­p­li­ca­ti­on of a recA gene-ba­sed iden­ti­fi­ca­ti­on ap­proach to the mai­ze rhi­zo­s­phe­re re­veals no­vel di­ver­si­ty in Burk­hol­de­ria spe­cies. FEMS Mi­cro­bi­ol. Lett. 259:126-132.
Precht, E., Janssen, F., Huettel, M. (2006) Near-bot­tom per­for­mance of the Acoustic Dopp­ler Ve­lo­ci­me­ter (ADV) – a com­pa­ra­ti­ve stu­dy. Aqua­tic Eco­lo­gy 40: 481-492.
Ramette, A., Y. Moënne-Loccoz, and G. Défago (2006). Ge­ne­tic di­ver­si­ty and bio­con­trol po­ten­ti­al of fluo­re­scent pseu­do­mo­nads pro­du­cing phlo­rog­lu­ci­n­ols and hy­dro­gen cya­ni­de from Swiss soils na­tu­ral­ly sup­pres­si­ve or con­du­ci­ve to Thiela­vi­op­sis ba­si­co­la-me­dia­ted black root rot of to­bac­co. FEMS Mi­cro­bi­ol. Ecol. 55:369-381.
Rasheed, M., C. Wild, C. Jantzen, and M. Badran (2006). Mi­ne­ra­liza­t­i­on of par­ti­cu­la­te or­ga­nic mat­ter de­ri­ved from co­ral-reef or­ga­nisms in reef se­di­ments of the Gulf of Aqa­ba. Chem. Ecol. 22:13-20.
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Sauter, E., S. I. Muyakshin, J. L. Charlou, M. Schlüter, A. Boetius, K. Jerosch, E. Damm, J. P. Foucher, and M. Klages (2006). Me­tha­ne di­sch­ar­ge from a deep-sea sub­ma­ri­ne mud vol­ca­no into the up­per wa­ter co­lumn by gas hy­dra­te-coated me­tha­ne bub­bles. Earth. Pla­net. Sc. Lett. 243:354-365.
Werner, U., M. Billerbeck, L. Polerecky, U. Franke, M. Huettel, J. E. E. van Beusekom, and D. de Beer (2006). Spa­ti­al and tem­po­ral pat­terns of mi­ne­ra­liza­t­i­on ra­tes and oxy­gen dis­tri­bu­ti­on in a per­me­able in­terti­dal sand flat (Sylt, Ger­ma­ny). Lim­nol. Ocea­no­gr. 51:2549-2563.
Werner, U., P. Bird, C. Wild, T. Ferdelman, L. Polerecky, G. Eickert, R. Jonstone, O. Hoegh-Guldberg, and D. de Beer (2006). Spa­ti­al pat­terns of ae­ro­bic and an­ae­ro­bic mi­ne­ra­liza­t­i­on ra­tes and oxy­gen pe­ne­tra­ti­on dy­na­mics in co­ral reef se­di­ments. Mar. Ecol. Prog. Ser. 309:93-105.
Wild, C., C. Laforsch, and M. Huettel (2006). De­tec­tion and en­u­me­ra­ti­on of mi­cro­bi­al cells wi­t­hin high­ly po­rous cal­ca­reous reef sands. Mar. Freshwa­ter Res. 57:415-420.
2005Boetius, A. (2005) Mi­cro­fau­na - ma­cro­fau­na in­ter­ac­tion in the seaf­loor: les­sons from the tu­be­worm. PLOS Bio­lo­gy, 3(3): 0375-0378.
Boetius, A. (2005). Lost City Life. Sci­ence, 307: 1420-1422.
Buhring, S.I., Elvert, M. and Witte, U. (2005). The mi­cro­bi­al com­mu­ni­ty struc­tu­re of dif­fe­rent per­me­able san­dy se­di­ments cha­rac­te­ri­zed by the in­ves­ti­ga­ti­on of bac­te­ri­al fat­ty acids and fluo­re­scence in situ hy­bri­di­za­t­i­on. En­vi­ron­men­tal Mi­cro­bio­lo­gy, 7(2): 281-293.
Glud, R.N., Wenzhöfer, F., Tengberg, A., Middelboe, M., Oguri, K. and Kitazato, H. (2005). Dis­tri­bu­ti­on of oxy­gen in sur­face se­di­ments from cen­tral Sa­ga­mi Bay, Ja­pan: In situ mea­su­re­ments by mi­cro­elec­tro­des and pla­nar op­to­des. Deep-Sea Re­se­arch I, 52: 1974-1987.
Hoffmann, F., Larsen, O., Rapp, H.T. and Osinga, R. (2005). Oxy­gen dy­na­mics in cho­a­no­so­mal spon­ge ex­plants. Ma­ri­ne Bio­lo­gy Re­se­arch, 1: 160-163.
Hoffmann, F., Larsen, O., Thiel, V., Rapp, H.T., Pape, T., Michaelis, W. and Reitner, J. (2005). An an­ae­ro­bic world in spon­ges. Geo­mi­cro­bio­lo­gy Jour­nal, 22(1): 1-10.
Janssen, F., Faerber, P., Huettel, M., Meyer, V. and Witte, U. (2005). Pore-wa­ter ad­vec­tion and so­lu­te flu­xes in per­me­able ma­ri­ne se­di­ments (I): ca­li­bra­ti­on and per­for­mance of the no­vel bent­hic cham­ber sys­tem San­dy. Lim­no­lo­gy and Ocea­no­gra­phy, 50(3): 768-778.
Janssen, F., Huettel, M. and Witte, U. (2005). Pore-wa­ter ad­vec­tion and so­lu­te flu­xes in per­me­able ma­ri­ne se­di­ments (II): Bent­hic re­spi­ra­ti­on at three san­dy sites with dif­fe­rent per­me­a­bi­li­ties (Ger­man Bight, North Sea). Lim­no­lo­gy and Ocea­no­gra­phy, 50(3): 779-792.
Niemann, H., Elvert, M., Hovland, M., Orcutt, B., Judd, A.G., Suck, I., Gutt, J., Joye, S., Damm, E., Finster, K. and Boetius, A. (2005). Me­tha­ne emis­si­on and con­sump­ti­on at a North Sea gas seep (Tom­me­li­ten area). Bio­geo­sci­en­ces, 2: 335-351.
Orcutt B, Joye SB, Boetius A, Elvert M, Samarkin V (2005). Mole­cu­lar bio­geo­che­mis­try of sul­fa­te re­duc­tion, me­tha­no­ge­ne­sis and the an­ae­ro­bic oxi­da­ti­on of me­tha­ne at Gulf of Me­xi­co cold seeps. Geochi­mi­ca et Cos­mochi­mi­ca Acta, 69, 4267-4281.
Røy, H., Huettel, M. and Jørgensen, B.B. (2005). The in­flu­ence of to­po­gra­phy on the func­tio­nal ex­ch­an­ge sur­face of ma­ri­ne soft se­di­ments, as­ses­sed from se­di­ment to­po­gra­phy mea­su­red in situ. Lim­nol. Ocea­no­gr.,, 50(1): 106–112.
Tarpgaard I, Boetius A and Finster K (2005) Des­ul­fo­bac­ter psy­chro­to­le­rans sp. nov., a new psy­chro­to­le­rant sul­fa­te-re­du­cing bac­te­ri­um and de­scrip­ti­ons of its phy­sio­lo­gi­cal re­s­pon­se to tem­pe­ra­tu­re chan­ges. An­to­nie van Lee­uwen­ho­ek DOI 10.1007/​s10482-005-9014-1
Treude, T., Knittel, K., Blumenberg, M., Seifert, R. and Boetius, A. (2005). Sub­sur­face mi­cro­bi­al me­tha­notro­phic mats in the Black Sea. Appl. En­vi­ron. Mi­cro­bi­ol., 71(10): 6375-6378.
Treude, T., Krüger, M., Boetius, A. and Jørgensen, B.B. (2005). En­vi­ron­men­tal con­trol on an­ae­ro­bic oxi­da­ti­on of me­tha­ne in the gas­sy se­di­ments of Eckern­för­de Bay (Ger­man Bal­tic). Lim­nol. Ocea­no­gr., 50,: 1771-1786.
Treude, T., Niggemann, J., Kallmeyer, J., Wintersteller, P., Schubert, C.J., Boetius, A. and Jørgensen, B.B. (2005). An­ae­ro­bic oxi­da­ti­on of me­tha­ne and sul­fa­te re­duc­tion along the Chi­le­an con­ti­nen­tal mar­gin. Geochim. Cos­mochim. Acta, 69((11): 2767-2779.
Vopel, K., Thistle, D., Ott, J., Bright, M. and Roy, H. (2005). Wave-in­du­ced H2S flux susta­ins a che­mo­a­u­to­tro­phic sym­bio­sis. Lim­no­lo­gy and Ocea­no­gra­phy, 50(1): 128-133.
Wild, C., Rasheed, M., Jantzen, C., Cook, P.L.M., Struck, U., Huettel, M. and Boetius, A. (2005). Bent­hic me­ta­bo­lism and de­gra­da­ti­on of na­tu­ral par­ti­cu­la­te or­ga­nic mat­ter in car­bo­na­te and si­li­ca­te reef sands of the nort­hern Red Sea. Ma­ri­ne Eco­lo­gy Pro­gress Se­ries, 298: 69-78.
Wild, C., Røy, H. and Huettel, M. (2005). Role of pel­le­tiza­t­i­on in mi­ne­ra­liza­t­i­on of fine grai­ned co­as­tal se­di­ments. MA­RI­NE ECO­LO­GY PRO­GRESS SE­RIES, 291: 23–33,.
Wild, C., Woyt, H. and Huettel, M. (2005). In­flu­ence of co­ral mu­cus on nut­ri­ent flu­xes in car­bo­na­te sands. MA­RI­NE ECO­LO­GY PRO­GRESS SE­RIES, 287: 87–98.
2004Boetius A., Suess E. (2004). Hy­dra­te Ridge: A na­tu­ral la­bo­ra­to­ry for the stu­dy of mi­cro­bi­al life fu­e­led by me­tha­ne from near-sur­face gas hy­dra­tes. Che­mi­cal Geo­lo­gy 205, 291-310
Ehrenhauss, S., Witte, U., Janssen, F., Huettel, M. (2004) De­com­po­si­ti­on of dia­toms and nut­ri­ent dy­na­mics in per­me­able North Sea se­di­ments. Con­ti­nen­tal Shelf Re­se­arch 24: 721-737.
Hensen, C., Pfeifer, K., Wenzhöfer, F., Volbers, A., Schulz, S., Holstein, J., Romero, O. and Seiter, K. (2004). Flu­xes at the bent­hic boun­da­ry lay­er - A glo­bal view from the South At­lan­tic. In: G. We­fer, S. Mu­litza and V. Rat­mey­er (Edi­tors), The South At­lan­tic in the late Qua­tern­ary. Sprin­ger Vgl., Ber­lin, pp. 401-430.
Joye, SB, Boetius, A, Orcutt, BN, JP Montoya, Schulz, HN, Erickson, MJ, Lugo S. (2004). The an­ae­ro­bic oxi­da­ti­on of me­tha­ne and sul­fa­te re­duc­tion in se­di­ments from Gulf of Me­xi­co cold seeps. Che­mi­cal Geo­lo­gy 205, 219-238
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Rasheed, M., Wild, C., Franke, U. and Huettel, M. (2004). Bent­hic pho­to­syn­the­sis and oxy­gen con­sump­ti­on in per­me­able car­bo­na­te se­di­ments at He­ron Is­land, Gre­at Bar­ri­er Reef, Aus­tra­lia. Es­tua­ri­ne Co­as­tal and Shelf Sci­ence 59(1): 139-150.
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Weaver, P., Billet, D.M., Boetius, A., Danovaro, R., Freiwald, A. and Sibuet, M. (2004). Hot­spot Eco­sys­tem Re­se­arch on Eu­ro­pe's Deep-Oce­an Mar­gins. Ocea­no­gra­phy, 17(4): 49-59.
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Wild, C., Huettel, M., Klueter, A., Kremb, S.G., Rasheed, M.Y.M. and Jorgensen, B.B. (2004). Co­ral mu­cus func­tions as an en­er­gy car­ri­er and par­ti­cle trap in the reef eco­sys­tem. Na­tu­re, 428: 66-70.
Wild, C., Rasheed, M., Werner, U., Franke, U., Johnstone, R. and Huettel, M. (2004). De­gra­da­ti­on and mi­ne­ra­liza­t­i­on of co­ral mu­cus in reef en­vi­ron­ments. MA­RI­NE ECO­LO­GY PRO­GRESS SE­RIES, 267: 159–171.
Wild, C., Tollrian, R. and Huettel, M. (2004). Ra­pid re­cy­cling of co­ral mass-spaw­ning pro­ducts in per­me­able reef se­di­ments. MA­RI­NE ECO­LO­GY PRO­GRESS SE­RIES, 271: 159–166.

 

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Ha­eckel, M. , Vink, A. , Janssen, F., Kas­ten, S. (2020) En­vi­ron­men­tal Im­pacts of Deep Se­abed Mi­ning / T. Heidar (edi­tor) , In: New Know­ledge and Chan­ging Cir­cum­stan­ces in the Law of the Sea, Deep Se­abed Mi­ne­ral Re­sour­ces and the Ma­ri­ne En­vi­ron­ment, Lei­den, The Nether­lands, Brill Ni­jhoff . doi: 10.1163/​9789004437753_018

 

Wegener, G. , Laso-Pérez, R., Boetius, A. (2020) With a litt­le help from my fri­ends – life fu­e­led by gas re­lease from the se­abed: deep sea vents and seeps. Edi­tor: Ken­neth Tim­mis. In: A child-centric mi­cro­bio­lo­gy edu­ca­ti­on frame­work

 

Knittel K, We­ge­ner G, Boe­ti­us A. (2019) An­ae­ro­bic me­tha­ne oxi­di­zers. In: Mi­cro­bi­al Com­mu­nities Uti­li­zing Hy­dro­c­ar­bons and Li­pids: Mem­bers, Me­ta­ge­no­mics and Eco­phy­sio­lo­gy, Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy. Edi­tor: T. J. Mc­Ge­ni­ty. Sprin­ger In­ter­na­tio­nal Pu­blis­hing, pp. 113-132. doi:10.1007/978-3-303-14785-3_7

 

Teske A., Car­val­ho V. Ma­ri­ne Hy­dro­c­ar­bon Seeps - Mi­cro­bio­lo­gy and Bio­geo­che­mis­try of a Glo­bal Ma­ri­ne Ha­bi­tat. Sprin­ger Na­tu­re Swit­z­er­land (in press)

 

Teske A., Car­val­ho V. Lar­ge sul­fur-oxi­di­zing bac­te­ria at Gulf of Me­xi­co hy­dro­c­ar­bon seeps. In: Ma­ri­ne Hy­dro­c­ar­bon Seeps - Mi­cro­bio­lo­gy and Bio­geo­che­mis­try of a Glo­bal Ma­ri­ne Ha­bi­tat. Edi­tors: A. Tes­ke and V. Car­val­ho. Sprin­ger Na­tu­re Swit­z­er­land (in press)

 

We­ge­ner G., Knittel K., Bohrmann G., Schubotz F. Bent­hic deep-sea life as­so­cia­ted with asphal­tic hy­dro­c­ar­bon emis­si­ons in the sou­thern Gulf of Me­xi­co. In: Ma­ri­ne Hy­dro­c­ar­bon Seeps - Mi­cro­bio­lo­gy and Bio­geo­che­mis­try of a Glo­bal Ma­ri­ne Ha­bi­tat. Edi­tors: A. Tes­ke and V. Car­val­ho. Sprin­ger Na­tu­re Swit­z­er­land (in press)

 

Speich S., Lee T., Muller-Karger F. E., Lorenzoni L., Pascual A., Jin D., Delory E., Reverdin G., Siddorn J., Lewis M. R., Marba N., But­ti­gieg P. L., et al. (2019). Ocean­obs19: An Oce­an of Op­por­tu­ni­ty. Fron­tiers in Ma­ri­ne Sci­ence 6, 570.

 

Dittami S.M, Arboleda E., Auguet J.C., Bigalke A., Briand E., Cárdenas P., Cardini U., Decelle J., Engelen A. H., Eveillard D., Gachon C.M., Griffiths S.M., Harder T., Kayal E., Kazamia E., Lallier F., Medina M., Marzinelli E., Mor­gan­ti T.,  Núñez Pons L., Pardo S., Valverde J.P., Saha M., Selosse M.A., Skillings D., Stock W., Sunagawa S., Toulza E., Vorobev A., Leblanc C., and Not F. (2019). A com­mu­ni­ty per­spec­tive on the con­cept of ma­ri­ne ho­lo­bi­onts: cur­rent sta­tus, chal­len­ges, and fu­ture di­rec­tions. PeerJ Re­prints doi:10.7287/​peerj.pre­prints.27519v1.

 

Kahlert M., Alfjorden A., Apunte-Ramos K., Bailet B., Pérez Burillo J., Carrera Gonzalez A. G., Castro D., Di Bernardi C., Dully V., Fekete J., Frühe L., González R., Gratsia E., Hanjalić J., Kamberović J., Kelly A.-M., Meriggi C., Nousiainen I., Ørberg S., Orr J., Quintana C., Papatheodoulou A., Sargac J., Shahbaz M., Tapolczai K., Tosic K., Wallin I., Zupančič M., Bohman P., But­ti­gieg P. L., Häubner N., Leese F., Macher J., Peura S., Roslin T., Strand M., Terenius O., Vasselon V., Weigand A. M. (2019). New mole­cu­lar me­thods to as­sess bio­di­ver­si­ty. Po­ten­ti­als and pit­falls of DNA me­ta­bar­co­ding: a work­shop re­port. Re­se­arch Ide­as and Out­co­mes: e38915. https://​doi.org/​10.3897/​rio.5. e38915.

  Bi­en­hold C. and Boe­ti­us A. (2017) Mi­kro­or­ga­nis­men des Tief­see­bo­dens: Viel­falt, Ver­tei­lung und Funk­ti­on. In: Fas­zi­na­ti­on Mee­res­for­schung. Ein öko­lo­gi­sches Le­se­buch. 2. Auf­la­ge. Edi­to­ren: G. Hem­pel, K. Bi­schof, W. Ha­gen, Sprin­ger-Spek­trum Ver­lag, Hei­del­berg pp. 211-222. DOI 10.1007/978-3-662-49714-2_20
 

Driemel A., Fahrbach E., Rohardt G., Beszczynska-Moller A., Boe­ti­us A. et al. (2017) From pole to pole: 33 ye­ars of phy­si­cal ocea­no­gra­phy on­board R/​V Po­lar­stern. Earth Sys­tem Sci­ence Data. Vol 9(1); 211-220 DOI 10.5194/essd-9-211-2017

  Linke, P., Haeckel, M., Schneider von Deimling, J., Vielstädte, L., Schmidt, M., Karstens, J., Berndt, C., Herreilers, H., Lichtschlag, A., James, R., Connelly, D., Baumberger, T., Pedersen, R.B., Denny, A.R., Rapp, H.T., Thorseth, I.H., Molari, M., de Beer, D., Rehder, G., Kedzior, S., Beaubien, S. and de Vittor, C. (2014) Flu­xes of CO2 from na­tu­ral seep sites and Sleip­ner sto­r­a­ge site ECO2 De­li­ver­a­ble, D2.2., 43 pp. ECO2 Pro­ject Of­fice, Kiel, Ger­ma­ny. DOI 10.3289/ECO2_D2.2.
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  Boetius, A., Gutt J., Helmke E., and Meyer B. (2013) Le­ben im und un­ter dem Eis – zur Viel­falt des Le­bens in po­la­ren Le­bens­räu­men. In E. Beck (ed). „Die Viel­falt des Le­bens“, Wi­ley-VCH Wein­heim, pp. 149-160.
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  Sergeeva, N.G., A.J. Gooday, S.A. Mazlumyan, E.A. Kolesnikova, A. Lichtschlag*, T.N., Kosheleva and O.V. Anikeeva. (2012) Mei­o­bent­hos of the oxic/​an­oxic in­ter­face in the south-wes­tern re­gi­on of the Black Sea: ab­un­dance and ta­xo­no­mic com­po­si­ti­on. In A.V. Al­ten­bach, J.M. Bern­hard and J. Se­ck­bach (eds). “An­oxia: Evi­dence for eu­ka­ryo­te sur­vi­val and pa­leon­to­lo­gi­cal stra­te­gies”, Sprin­ger Nether­lands, pp. 369-401.
  Knittel, K. und A. Boetius. (2011) An­ae­ro­bic oxi­da­ti­on of me­tha­ne. In V. Thiel und J. Reit­ner (eds). “En­cy­clo­pe­dia of Geo­bio­lo­gy”. Sprin­ger Ver­lag, pp. 36-47.
  Boetius, A. und H. Boetius. (2011) Das Dunk­le Pa­ra­dies – Ent­de­ckung der Tief­see. Ran­dom Hou­se Ber­tels­mann, pp. 456.
  Amaral-Zettler, L., L.F. Artigas, J. Baross, P.A.L. Bharathi, A. Boetius, D. Chandramohan, G. Herndl, K. Kogure, P. Neal, C. Pedrós-Alió, A. Ramette, S. Schouten, L. Stal, A. Thessen, J. de Leeuw und M. Sogin. 2010. A Glo­bal Cen­sus of Ma­ri­ne Mi­cro­bes. In A.D. McIn­ty­re (ed) “Life in the Worl­d’s Oce­ans”. Black­well Pu­blis­hing, Part 3 Oce­ans Pre­sent – Glo­bal Dis­tri­bu­ti­ons, pp. 223-245.
  Boetius, A. und K. Knittel. 2010. Ha­bi­tats of an­ae­ro­bic me­tha­ne oxi­di­zers. In K.N. Tim­mis (ed) “Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy”. Sprin­ger Ver­lag, Part 21 Mi­cro­bi­al Com­mu­nities Ba­sed on Hy­dro­c­ar­bons, Oils and Fats: Na­tu­ral Ha­bi­tats, pp. 2193-2202.
  Boetius, A. und F. Wenzhöfer. 2010. Me­thods for the stu­dy of cold seep eco­sys­tems. In K.N. Tim­mis (ed) “Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy”. Sprin­ger Ver­lag, Part 31 Ex­pe­ri­men­tal Pro­to­cols and Ap­pen­di­ces, pp. 3443-3451.
  Fischer, J.P. und T.G. Ferdelman. 2010. Vier­zig Tage in der Was­ser­wüs­te. Spek­trum der Wis­sen­schaft, March 2010, pp. 16-18.
  Knittel, K. und A. Boetius. 2010. An­ae­ro­bic Me­tha­ne Oxi­di­zers. In K.N. Tim­mis (ed) “Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy”. Sprin­ger Ver­lag, Part 19 The Mi­cro­bes (6), pp. 2023-2032.
  Niemann, H. und A. Boetius. 2010. Mud vol­ca­noes. In K.N. Tim­mis (ed) “Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy”. Sprin­ger Ver­lag, Part 3, pp. 205-214.
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M.Sc. and Ph.D. Theses

Hanna Stephanie Zehnle (2023) PhD the­sis. Ex­plo­ring the up­per tem­pe­ra­tu­re li­mit and bio­si­gna­tu­res of ar­chaea and bac­te­ria in­vol­ved in an­ae­ro­bic hy­dro­c­ar­bon  de­gra­da­ti­on  (Supervisor: Gun­ter We­ge­ner)

 

Pia Ditzel (2023) MSc. the­sis. Pos­si­ble im­pacts of deep-sea traw­ling in the Arc­tic Oce­an off Sval­bard (Supervisor: Da­vi­de Se­ve­so, Au­tun Purser)

  David Benito Merino (2022) PhD the­sis. Ar­chaea and bac­te­ria me­dia­ting an­ae­ro­bic al­ka­ne de­gra­da­ti­on at its up­per tem­pe­ra­tu­re li­mit (Supervisors: Gun­ter We­ge­ner, Ant­je Boe­ti­us)
   Magda Cardozo Mino (2022) PhD the­sis. Uni­ver­si­ty of Bre­men. Tem­po­ral and spa­ti­al dy­na­mics of ma­ri­ne mi­cro­or­ga­nisms in ice-co­ve­r­ed seas. (Supervisors: Chris­ti­na Bi­en­hold, Ant­je Boe­ti­us)
 

Meyer, R. (2020) MSc. the­sis. In­ves­ti­ga­ting glo­bal-sca­le bio­di­ver­si­ty of ma­ri­ne mi­cro­bes - Towards a trans­pa­rent, ac­ces­si­ble, and in­ter­ope­ra­ble sys­tem for omics data ex­ch­an­ge.  Uni­ver­si­ty of Bre­men, Bre­men, Ger­ma­ny.

 

Maeke, M. (2019) MSc. the­sis. An­ae­ro­bic pen­ta­ne and he­xa­ne de­gra­da­ti­on by ther­mo­phi­lic mi­cro­or­ga­nisms from Gu­ay­mas Ba­sin. Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny

 

Fadeev E. (2018) PhD the­sis. Eco­lo­gi­cal ob­ser­va­tions of pel­agic bac­te­ri­al and ar­chae­al com­mu­nities in an At­lan­tic-Arc­tic boun­da­ry zone. Uni­ver­si­ty of Bre­men/​​Al­fred We­ge­ner In­sti­tu­te for Po­lar and Ma­ri­ne Re­se­arch, Bre­mer­ha­ven, Ger­ma­ny.

 

Laso-Pérez R. (2018) PhD the­sis. A no­vel me­cha­nism for the an­ae­ro­bic de­gra­da­ti­on of non-me­tha­ne hy­dro­c­ar­bons in ar­chaea. Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny.

 

Cardozo Mino M.G. (2018) M.Sc. the­sis. Iden­ti­fi­ca­ti­on of the eco­phy­sio­lo­gi­cal role of SAR202/Chloroflexi in LTER HAUS­GAR­TEN (Fram Strait) se­di­ments. Carl von Os­sietz­ky Uni­ver­si­ty Ol­den­burg/ Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny.

 

Bodur Y. (2018) Bent­hic soft-bot­tom com­mu­nities and eco­sys­tem func­tions on the Nor­theast Green­land Shelf. Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny / Al­fred We­ge­ner In­sti­tu­te for Po­lar and Ma­ri­ne Re­se­arch, Bre­mer­ha­ven, Ger­ma­ny /Ghent Uni­ver­si­ty, Bel­gi­um.

 

Rapp J. (2018) PhD the­sis. Di­ver­si­ty and func­tion of mi­cro­bi­al com­mu­nities in the Arc­tic Oce­an. Uni­ver­si­ty of Bre­men/​​Al­fred We­ge­ner In­sti­tu­te for Po­lar and Ma­ri­ne Re­se­arch, Bre­mer­ha­ven, Ger­ma­ny.

 

Hoffman R. (2018) PhD the­sis. Or­ga­nic car­bon cy­cling in Pot­ter Cove (Ant­arc­tica): Sub­ject to gla­cier re­tre­at. Uni­ver­si­ty of Bre­men/​​Al­fred We­ge­ner In­sti­tu­te for Po­lar and Ma­ri­ne Re­se­arch, Bre­mer­ha­ven, Ger­ma­ny.

 

Blumberg K. (2018) M.Sc. The­sis. In­ter­con­nec­ting Arc­tic ob­ser­va­to­ry data through ma­chi­ne-ac­tionable know­ledge re­pre­sen­ta­ti­on: are on­to­lo­gies fit for pur­po­se? Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny

 

Von Jackowski A.C. (2018) M.Sc. The­sis. Ef­fect of se­a­m­ounts on mi­cro­bi­al di­ver­si­ty and com­mu­ni­ty struc­tu­re in the Cen­tral Arc­tic Oce­an. Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny

 

Hahn, C.J. (2017) M.Sc. The­sis. Eco­lo­gy and ge­no­mics of Ar­chaea in­vol­ved in hy­dro­c­ar­bon de­gra­da­ti­on. Uni­ver­si­ty of Bre­men/​Max-Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny.

 

Hoffman K. (2017) PhD The­sis. Iden­ti­ty and func­tion of key bac­te­ri­al groups in arc­tic deep-sea sur­face se­di­ments. Uni­ver­si­ty of Bre­men/​Al­fred We­ge­ner In­sti­tu­te for po­lar and ma­ri­ne re­se­arch, Bre­mer­ha­ven, Ger­ma­ny.

  Schorn S. (2017) M.Sc. The­sis. Life style and cell ar­chi­tec­tu­re of Ach­ro­ma­ti­um. Carl von Os­sietz­ky Uni­ver­si­ty of Ol­den­burg/​Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men, Ger­ma­ny.
  Hassenrück, C. (2016) Ph.D. The­sis. Im­pli­ca­ti­ons of oce­an aci­di­fi­ca­ti­on for mi­cro­bi­al life and for mi­cro­bi­al in­ter­ac­tions. Uni­ver­si­ty of/​Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men, Ger­ma­ny.
  Vonnahme, T. (2016) M.Sc. The­sis. Mi­cro­bi­al di­ver­si­ty and func­tion of deep-sea man­ga­ne­se no­du­le eco­sys­tems. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men, Ger­ma­ny.
 

Wulff, T. (2015) Ph.D. The­sis. Phy­sics and eco­lo­gy of the mar­gi­nal ice zone of the Fram Strait – a ro­bo­tic ap­proach. Uni­ver­si­ty of Bre­men.

  Krukenberg, V. (2015) Ph.D. The­sis. Phy­sio­lo­gi­cal and ge­no­mic cha­rac­te­riza­t­i­on of ther­mo­phi­lic me­tha­notro­phic ar­chaea and part­ner bac­te­ria. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Laso-Perez, R. (2015) M.Sc. The­sis. Mole­cu­lar in­sights into a bu­ta­ne de­gra­ding ther­mo­phi­lic con­sor­tia. Uni­ver­si­ty of Bre­men/ MAR­MIC In­ter­na­tio­nal Max Planck Re­se­arch School.
  Valderio, G. (2015) M.Sc. The­sis. Pro­ka­ryo­tic com­mu­ni­ty struc­tu­re in ul­tra-slow sprea­ding Sou­thwest In­dian Ridge. Uni­ver­si­ty of Bo­lo­gna / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Jessen Reyes, G. L. (2015) Ph.D. The­sis. Struc­tu­ral and func­tio­nal chan­ges in ma­ri­ne mi­cro­bi­al com­mu­nities as­so­cia­ted with oxy­gen dy­na­mics. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Becker, S. (2014) M.Sc. The­sis. Ef­fects of or­ga­nic car­bon en­rich­ment on bent­hic bac­te­ri­al com­mu­nities from the Arc­tic deep sea (HAUS­GAR­TEN, Fram Strait). Hoch­schu­le Bre­mer­ha­ven / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Fernández Méndez, M. (2014) Ph.D. The­sis. Pri­ma­ry pro­duc­tivi­ty in Arc­tic sea ice and oce­an. Uni­ver­si­ty of Bre­men.
  Harding, K. J. (2014) M.Sc. The­sis. Ther­mo­phi­lic con­sor­tia in­vol­ving Hot­Seep-1. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Jacob, M. (2014) Ph.D. The­sis. In­flu­ence of Glo­bal Chan­ge on mi­cro­bi­al com­mu­nities in Arc­tic se­di­ments.  Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Rapp, J. Z. (2014) M.Sc. The­sis. Bac­te­ri­al di­ver­si­ty in sea ice, melt ponds, wa­ter co­lumn, ice al­gal ag­gre­ga­tes and deep-sea se­di­ments of the Cen­tral Arc­tic Oce­an. 99 pp. Uni­ver­si­ty of Bre­men / MAR­MIC In­ter­na­tio­nal Max Planck Re­se­arch School.
  Donis, D. (2013) Ph.D. The­sis. In­te­gra­ted bent­hic ex­ch­an­ge dy­na­mics and bio­geo­che­mi­cal pro­ces­ses un­der va­ry­ing en­vi­ron­men­tal con­di­ti­ons. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Ruff, S.E. (2013) Ph.D. The­sis. Mi­cro­bi­al com­mu­ni­ty eco­lo­gy of ma­ri­ne me­tha­ne seeps. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Pop Ristova, P. (2012) Ph.D. The­sis. Bio­geo­che­mi­cal ac­tivi­ty and as­so­cia­ted bio­di­ver­si­ty at re­du­ced deep-sea hot­spot eco­sys­tems. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Neumann, J. (2012) Ph.D. The­sis. Ef­fect of high CO2 and low pH on bent­hic com­mu­nities of the deep sea. Uni­ver­si­ty Bre­men / Bre­men In­ter­na­tio­nal Gra­dua­te School for Ma­ri­ne Sci­en­ces (GLO­MAR) / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Bienhold, C. (2011) Ph.D. The­sis. Di­ver­si­ty and eco­lo­gy of bac­te­ri­al com­mu­nities at the deep seaf­loor. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Fernandez Mendez, M. (2011) M.Sc. The­sis. Pri­ma­ry pro­duc­tivi­ty of sea ice al­gae un­der dif­fe­rent en­vi­ron­men­tal con­di­ti­ons. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men / Al­fred We­ge­ner In­sti­tu­te Bre­mer­ha­ven.
  Krukenberg, V. (2011) M.Sc. The­sis. Cha­rac­te­riza­t­i­on of ther­mo­phi­lic an­ae­ro­bic me­tha­notro­phy as­so­cia­ted with sul­fa­te re­duc­tion in Gu­ay­mas Ba­sin en­rich­ment cul­tu­res. Uni Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men..
  Gobet, A. (2010) Ph.D. The­sis. Mi­cro­bi­al com­mu­ni­ty eco­lo­gy of tem­pe­ra­te co­as­tal sands. Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Grünke, S. (2010) Ph.D. The­sis. Di­ver­si­ty of mat-for­ming sul­fi­de-oxi­di­zing bac­te­ria at con­ti­nen­tal mar­gins. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Schöttner, S. (2010) Ph.D. The­sis. Bac­te­ri­al ha­bi­tat dif­fe­ren­tia­ti­on in cold- and warm-wa­ter co­ral reef eco­sys­tems. Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Sonntag, B. (2010). M.Sc. The­sis. Mi­kro­bi­el­le Deu­te­rie­rung zur Er­mitt­lung von Me­tha­no­ge­ne­se­ra­ten. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Felden, J. (2009) Ph.D. The­sis. Me­tha­ne flu­xes and as­so­cia­ted bio­geo­che­mi­cal pro­ces­ses in cold seep eco­sys­tems. Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Fischer, J. (2009) Ph.D. The­sis. Oxy­gen dy­na­mics of ma­ri­ne se­di­ments on dif­fe­rent spa­ti­al sca­les. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Jacob, M. (2009) M.Sc. The­sis. De­ve­lop­ment and va­li­da­ti­on of com­mu­ni­ty fin­ger­prin­ting tools to ana­ly­ze mi­cro­bi­al di­ver­si­ty in ma­ri­ne se­di­ments. Uni­ver­si­ty Bre­men / MAR­MIC In­ter­na­tio­nal Max Planck Re­se­arch School.
  Pop Ristova, P. (2009) M.Sc. The­sis. Bio­geo­che­mi­cal ac­tivi­ty and as­so­cia­ted bio­di­ver­si­ty at re­du­ced deep sea hot spot eco­sys­tems. Uni­ver­si­ty of Bre­men / MAR­MIC In­ter­na­tio­nal Max Planck Re­se­arch School.
  Girnth, A.-C. (2008) Di­plo­ma The­sis. Di­ver­si­ty of sul­fi­de-oxi­di­zing bac­te­ria at Amon Mud Vol­ca­no. Leib­niz Uni­ver­si­ty Han­no­ver / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Böer, S. (2008) Ph.D. The­sis. In­ves­ti­ga­ti­on of the dis­tri­bu­ti­on and ac­tivi­ty of bent­hic mi­cro­or­ga­nisms in co­as­tal ha­bi­tats. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Pfitzner, B. (2008) Di­plo­ma The­sis. Mi­cro­bi­al Di­ver­si­ty in car­bo­na­te and si­li­ca­te sands of warm-wa­ter co­ral reefs. LMU Mu­nich / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Ufkes, J. (2008) Di­plo­ma The­sis. Im­pact of in­crea­sed CO2 con­cen­tra­ti­on on the struc­tu­re of mi­cro­bi­al com­mu­nities in ma­ri­ne se­di­ments. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Wegener, G. (2008) Ph.D. The­sis. Me­tha­ne oxi­da­ti­on and car­bon as­si­mi­la­ti­on in ma­ri­ne se­di­ments. Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Braunshausen, A. (2007) Di­plo­ma The­sis. Ar­chaea im Ark­ti­schen Tief­see­schwamm Ten­to­ri­um se­mi­sub­e­ri­tes. Uni­ver­si­tät Bo­chum / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Meziti, A. (2007) M.Sc. The­sis. Di­ver­si­ty and de­tec­tion of Ar­chaea in deep-sea se­di­ments. Uni­ver­si­ty of Bre­men / MAR­MIC In­ter­na­tio­nal Max Planck Re­se­arch School.
  Omoregie, E. (2007) Ph.D. The­sis. Func­tion and di­ver­si­ty of ma­ri­ne and hy­per­sa­li­ne mat for­ming mi­cro­bi­al com­mu­nities.  Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Schöttner, S. I. (2007) M.Sc. The­sis. Mi­cro­bi­al Ha­bi­tats in Cold-Wa­ter Co­ral Reef Ecoystems: Ex­plo­ring Di­ver­si­ty, Struc­tu­re and Dy­na­mics of As­so­cia­ted Pro­ka­ryo­tic Com­mu­nities. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Sweetman, A. K. (2007) Ph.D. The­sis. Ma­cro­fau­nal and fo­ra­mi­ni­fe­ral com­mu­ni­ty struc­tu­re and their re­s­pon­se to si­mu­la­ted phy­to­de­tri­tal food pul­ses in two con­tras­ting en­vi­ron­ments. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Kirf, M. K. (2006) Di­plo­ma The­sis. In­ves­ti­ga­ting small sca­le ad­vec­tive pro­ces­ses at a san­dy se­di­ment wa­ter in­ter­face from a dif­fu­si­ve ap­proach. Uni­ver­si­tät Ol­den­burg / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.
  Niemann, H. (2005) Ph.D. The­sis. Ra­tes and si­gna­tu­res of me­tha­ne tur­no­ver in se­di­ments of con­ti­nen­tal mar­gins. Uni­ver­si­ty of Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy Bre­men.

 

(*in­di­ca­tes work by for­mer mem­bers of the Ha­bi­tat Group pu­blis­hed af­ter they had left; #in­di­ca­tes work by mem­bers from be­fo­re they joi­ned)
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