Pu­bli­ka­tio­nen 2000-2004

Det­mers, J., Strauss, H., Schul­te, U., Berg­mann, A., Knit­tel, K., Kue­ver, J.: FISH shows that Des­ul­fo­to­ma­cu­lum spp. are the do­mi­na­ting sul­fa­te-re­du­cing bac­te­ria in a pris­ti­ne aqui­fer. Mi­cro­bi­al Eco­lo­gy, 47:236-242 (2004).

Dinh, H.T., Kue­ver, J., Muß­mann, M., Has­sel, A. W., Strat­mann, M., Wid­del, F.: Iron cor­ro­si­on by no­vel an­ae­ro­bic mi­cro­or­ga­nisms. Na­tu­re 427:829-832 (2004).

Gade, D., H. Schles­ner, F. O. Glöck­ner, R. Amann, S. Pfeif­fer, and M. Thomm: Iden­ti­fi­ca­ti­on of planc­to­my­ce­tes with or­der-, ge­nus- and strain-spe­ci­fic 16S rRNA-tar­ge­ted pro­bes. Mi­cro­bio­lo­gy Eco­lo­gy 47:243-251 (2004).

Grün­berg, K., E. C. Mül­ler, A. Otto, R. Res­z­ka, D. Lin­der, M. Kube, R. Rein­hardt, and D. Schü­ler: Bio­che­mi­cal and pro­teo­mic ana­ly­sis of the ma­gne­to­so­me mem­bra­ne in Ma­gne­to­spi­ril­lum gry­phis­wal­den­se. Appl. Ev­i­ron. Mi­cro­bi­ol. 70(2):1040-1050 (2004).

Hai T, Lan­ge D, Ra­bus R, Stein­bü­chel A: Po­ly­hy­droxyal­ka­noa­te (PHA) ac­cu­mu­la­ti­on in sul­fa­te-re­du­cing bac­te­ria and iden­ti­fi­ca­ti­on of a class-III PHA syn­tha­se (Pha­EC) in Des­ul­fo­coc­cus mul­tiv­or­ans. Appl En­vi­ron Mi­cro­bi­ol 70(8):4440-4448 (2004).

Hand­rick, R., S. Rein­hardt, D. Schult­heiss, T. Reich­art, D. Schü­ler, V. Jen­d­ros­sek, and D. Jen­d­ros­sek: Un­ra­ve­ling the func­tion of the Rho­dos­pi­ril­lum ru­brum ac­tiva­tor of po­ly­hy­droxy­bu­ty­ra­te (PHB) de­gra­da­ti­on: the ac­tiva­tor is a PHB-gra­nu­le-bound pro­te­in (pha­sin). J. Bac­te­ri­ol. 186(8):2466-75 (2004).

Ho­ell, A., A. Wie­den­mann, U. Heyen, and D. Schü­ler: Na­no­struc­tu­re and field-in­du­ced ar­ran­ge­ment of ma­gne­to­so­mes stu­di­ed by SANS­POL. Phy­si­ca B 350:e309-e313 (2004).

Huf­na­gel P, Schwei­ger-Huf­na­gel U, Beh­rens M, Macht M, Ba­ess­mann C, Suckau D, Schü­ren­berg M, Ra­bus R: Bak­te­ri­um mit vor­her­ge­sag­ten ORFs – eine Her­aus­for­de­rung für die Pro­teom­ana­ly­tik. La­bor­welt 5(4):31-34 (2004).

Kube M, Hei­der J, Amann J, Huf­na­gel P, Küh­ner S, Beck A, Rein­hardt R, Ra­bus R: Ge­nes in­vol­ved in the an­ae­ro­bic de­gra­da­ti­on of to­lue­ne in a de­ni­tri­fy­ing bac­te­ri­um, strain EbN1. Arch Mi­cro­bi­ol 181:182-194 (2004).

Musat, F., Wie­land, A., Wid­del, F.: Ma­ri­ne se­di­ment with sur­face con­ta­mi­na­ti­on by oil in mi­cro­cosms for mi­cro­bio­lo­gi­cal stu­dies. Ophe­lia 58 (3):217-222 (2004).

Ra­bus, R., Ruepp A., Fri­ckey T., Rat­tei T., Fart­mann B., Stark M., bau­er M., Zi­bat A., Lom­bar­dot T., Be­cker I., Amann J., Gell­ner K., Ree­ling H., Leu­sch­ner W.D., Glöck­ner F.-O., Lu­pas A.N., Amann R., Klenk H.-P.: The ge­no­me of Des­ul­fo­ta­lea psy­chro­phi­la, a sulp­hat-re­du­cing bac­te­ri­um from per­man­ent­ly cold Arc­tic se­di­ments. En­vi­onmen­tal Mi­cro­bio­lo­gy, 6(9):887-902 (2004).

Rehm, B., and D. Schü­ler: Klein–Klei­ner–Am Kleins­ten: Na­no­bio­tech­no­lo­gie, eine Schlüs­sel­tech­no­lo­gie des 21. Jahr­hun­derts, pp.56-61, In: Bio­tech­no­lo­gie 2020. DE­CHE­MA, Frank­furt (2004).

Schles­ner H, Rens­mann C, Tindall B J, Gade D, Ra­bus R, Pfeif­fer S, Hirsch P: Ta­xo­no­mic he­te­ro­gen­ei­ty wi­t­hin the Planc­to­myce­ta­les as de­ri­ved by DNA-DNA hy­bri­di­za­t­i­on, de­scrip­ti­on of Rho­do­pi­rel­lu­la bal­ti­ca gen. nov., sp. nov. and trans­fer of Pi­rel­lu­la ma­ri­na to the ge­nus Blas­t­o­pi­rel­lu­la gen. nov. as Blas­t­o­pi­rel­lu­la ma­ri­na comb. nov. and emen­ded de­scrip­ti­on of the ge­nus Pi­rel­lu­la. Int J Syst Evol Mi­cro­bi­ol 54:1567-1580 (2004).

Schü­ler, D.: Chap­ter 4. Bio­che­mi­cal and ge­ne­tic ana­ly­sis of the ma­gne­to­so­me mem­bra­ne in Ma­gne­to­spi­ril­lum gry­phis­wal­den­se. pp.61-73, In Bio­mi­ne­ra­liza­t­i­on. 2nd ed., E. Bäu­er­lein (ed.), Wi­ley-VCH, Wein­heim, Ger­ma­ny (2004).

Schü­ler, D.: Ma­king ma­gnets by bac­te­ria: The bio­mi­ne­ra­liza­t­i­on of ma­gne­tic na­no­par­ti­cles. pp. 11-15, In: Lec­tu­res on Na­no­s­ca­le ma­gne­tic ma­te­ri­als, I. Ned­kov and P. Tail­ha­des (eds.), He­ron Press Ltd. (2004).

Schü­ler, D.: Mole­cu­lar ana­ly­sis of a sub­cel­lu­lar com­part­ment: The ma­gne­to­so­me mem­bra­ne in Ma­gne­to­spi­ril­lum gry­phis­wal­den­se. Arch. Mi­cro­bi­ol. 181:1-7 (2004).

Schwei­ger-Huf­na­gel U, Beh­rens M, Jür­gens M, Ba­ess­mann C, Suckau D, Ra­bus R: Neu­es Werk­zeug für die de-novo Se­quen­zie­rung von Pro­te­inen. Bio­spek­trum Son­der­aus­ga­be 10. Jahr­gang, 566-567 (2004).

Wid­del, F., Boe­ti­us, A., Ra­bus, R.: An­ae­ro­bic bio­de­gra­da­ti­on of hy­dro­c­ar­bons in­clu­ding me­tha­ne. In The Pro­ka­ryo­tes, elec­tro­nic edi­ti­on. Dwor­kin, M., Fal­kow, S., Ro­sen­berg, E., Schlei­fer, K.-H., Sta­cke­brandt, E. (eds), Sprin­ger, New York (2004).

Zhi­li­na, T.N., Ap­pel, R., Pro­bi­an, C., Ll­o­bet Bros­sa, E., Har­der, J., Wid­del, F., Za­var­zin, G.A.: Al­ka­lif­le­xus ims­henets­kii gen. nov. sp. nov., a new al­ka­li­phi­lic gli­ding car­bo­hy­dra­te-fer­men­ting bac­te­ri­um with pro­pio­na­te for­ma­ti­on from a soda lake. Arch. Mi­cro­bi­ol. 182: 244-253 (2004).

Gade, D., J. Thier­mann, D. Mar­kow­sky and R. Ra­bus: Eva­lua­ti­on of two-di­men­sio­nal dif­fe­rence gel elec­tro­pho­re­sis for pro­te­in pro­filing. Jour­nal of Mole­cu­lar Mi­cro­bio­lo­gy and Bio­tech­no­lo­gy 5:240-251 (2003).

Glöck­ner F. O., M. Kube, M. Bau­er, H. Tee­ling, T. Lom­bar­dot, W. Lud­wig, D. Gade, A. Beck, K. Bor­zym, K. Heit­mann, R. Ra­bus, H. Schles­ner, R. Amann and R. Rein­hardt: Com­ple­te ge­no­me se­quence of the ma­ri­ne planc­to­my­ce­te Pi­rel­lu­la sp. strain 1. PNAS 100(14):8298-8303 (2003).

Ha­ve­mann, S.A., V. Bru­n­el­le, J.K. Vo­ordouw, G. Vo­ordouw, J.F. Hei­del­berg and R. Ra­bus: Gene ex­pres­si­on ana­ly­sis of en­er­gy me­ta­bo­lism mu­tants of Des­ul­fo­vi­brio vul­ga­ris Hil­den­bo­rough in­di­ca­tes an im­portant role for al­co­hol de­hy­dro­ge­na­se. Jour­nal of Bac­te­rio­lo­gy 185(15):4345-4353 (2003).

Her­born C. U., N. Pa­pa­ni­ko­laou, R. Res­z­ka, K. Grün­berg, D. Schü­ler and J. F. De­ba­tin: Ma­gne­to­so­men als bio­lo­gi­sches Mo­dell der Ei­sen­bin­dung: Mes­sung der Re­la­xi­vi­tät in der MRT. Fort­schr. Rönt­gen­str. 175(6):830-834 (2003).

Heyen, U. and D. Schü­ler: Growth and ma­gne­to­so­me for­ma­ti­on by mi­cro­aero­phi­lic Ma­gne­to­spi­ril­lum strains in an oxy­gen-con­trol­led fer­men­tor. Ap­p­lied Mi­cro­bio­lo­gy and Bio­tech­no­lo­gy 61:536-544 (2003).

Knie­mey­er, O., T. Fi­scher, H. Wil­kes, F.O. Glöck­ner and F. Wid­del: An­ae­ro­bic de­gra­da­ti­on of ethyl­ben­ze­ne by a new type of ma­ri­ne sul­fa­te-re­du­cing bac­te­ri­um. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 69(2):760-768 (2003).
 
Kön­ne­ke, M. and F. Wid­del: Ef­fect of growth tem­pe­ra­tu­re on cel­lu­lar fat­ty acids in sulp­ha­te-re­du­cing bac­te­ria. En­vi­ron­men­tal Mi­cro­bio­lo­gy 5(11):1064-1070. (2003).

Krü­ger, M. and P. Fren­zel: Ef­fects of N-fer­ti­liza­t­i­on on CH4 oxi­da­ti­on and pro­duc­tion, and con­se­quen­ces for CH4 emis­si­ons from mi­cro­cosms and rice fiel­ds. Glo­bal Chan­ge Bio­lo­gy 9:773-784 (2003).

Krü­ger, M., A. Mey­er­dier­ks, F.O. Glöck­ner, R. Amann, F. Wid­del, M. Kube, R. Rein­hardt, J. Kahnt, R. Bö­cher, R.K. Thau­er and S. Shi­ma: A con­spi­cuous ni­ckel pro­te­in in mi­cro­bi­al mats that oxi­di­ze me­tha­ne an­ae­ro­bi­cal­ly. Na­tu­re 426:878-881 (2003).

Pro­bi­an, C., A. Wülfing and J. Har­der: An­ae­ro­bic mi­ne­ra­liza­t­i­on of qua­tern­ary car­bon atoms: iso­la­ti­on of de­ni­tri­fy­ing bac­te­ria on Pi­va­lic Acid (2,2-Di­me­thyl­pro­pio­nic Acid). Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 69(3):1866-1870 (2003).

Schüb­be, S., M. Kube, A. Schef­fel, C. Wa­wer, U. Heyen, A. Mey­er­dier­ks, M. Ma­dkour, F. May­er, R. Rein­hardt and D. Schü­ler: Cha­rac­te­riza­t­i­on of a spon­ta­neous non­ma­gne­tic mu­tant of Ma­gne­to­spi­ril­lum gry­phis­wal­den­se re­veals a lar­ge de­le­ti­on com­pri­sing a pu­ta­ti­ve ma­gne­to­so­me is­land. Jour­nal of Bac­te­rio­lo­gy 185(19):5779-5790 (2003).

Schult­heiss, D. and D. Schü­ler: De­ve­lop­ment of a ge­ne­tic sys­tem for Ma­gne­to­spi­ril­lum gry­phis­wal­den­se. Ar­chi­ves of Mi­cro­bio­lo­gy 179:89-94 (2003).

Tan, Z., T. Hu­rek, B. Rein­hold-Hu­rek: Brief Re­port. Ef­fect of N-fer­ti­liza­t­i­on, plant ge­no­ty­pe and en­vi­ron­men­tal con­di­ti­ons on nifH gene pools in roots of rice. En­vi­ron­men­tal Mi­cro­bio­lo­gy 5(10):1009-1015 (2003).

Wil­kes, H., S. Küh­ner, C. Bolm, T. Fi­scher, A. Clas­sen, F. Wid­del and R. Ra­bus: For­ma­ti­on of n-al­ka­ne- and cy­clo­al­ka­ne-de­ri­ved or­ga­nic acids du­ring an­ae­ro­bic growth of a de­ni­tri­fy­ing bac­te­ri­um with cru­de oil. Or­ga­nic Geo­che­mis­try 34: 1313-1323 (2003).

Hu­rek, T., L. L. Hand­ley, B. Rein­hold-Hu­rek and Y. Piché: Azo­ar­cus grass en­do­phy­tes cont­ri­bu­te fi­xed ni­tro­gen to the plant in an un­cul­tura­ble sta­te. Mole­cu­lar Plant-Mi­cro­be In­ter­ac­tions 15(3):233-242 (2002).

Krü­ger, M., G. El­ler, R. Con­rad, and P. Fren­zel: Sea­so­nal va­ria­ti­on in pa­thways of CH4 pro­duc­tion and in CH4 oxi­da­ti­on in rice fiel­ds de­ter­mi­ned by sta­ble car­bon iso­topes and spe­ci­fic in­hi­bi­tors. Glo­bal Chan­ge Bio­lo­gy 8:265-280 (2002).

Kue­ver, J., S. M. Sie­vert, H. Ste­vens, T. Brink­hoff and G. Muy­zer: Mi­cro­or­ga­nisms of the oxi­da­ti­ve and re­duc­tive part of the sulphur cy­cle at a shal­low-wa­ter hydro­ther­mal vent in the Ae­ge­an Sea (Mi­los, Greece). Ca­hiers de Bio­lo­gie Ma­ri­ne 43:413-416 (2002).

Nau­haus, K., A. Boe­ti­us, M. Krü­ger, and F. Wid­del: In vi­tro de­mons­tra­ti­on of an­ae­ro­bic oxi­da­ti­on of me­tha­ne cou­p­led to sulp­ha­te re­duc­tion in se­di­ment from a ma­ri­ne gas­hy­dra­te area. En­vi­ron­men­tal Mi­cro­bio­lo­gy 4(5):296-305 (2002).

Po­ho­re­lic, B. K. J., J. K. Vo­ordouw, E. Lo­jou, A. Dol­la, J. Har­der and G. Vo­ordouw: Ef­fects of de­le­ti­on of ge­nes en­co­ding Fe-only hy­dro­ge­na­se of Des­ul­fo­vi­brio vul­ga­ris Hil­den­bo­rough on hy­dro­gen and lac­ta­te me­ta­bo­lism. Jour­nal of Bac­te­rio­lo­gy 184(3):679-686 (2002).

Ra­bus, R., V. Brü­chert, J. Amann and M. Kön­ne­ke: Phy­sio­lo­gi­cal re­s­pon­se to tem­pe­ra­tu­re chan­ges of the ma­ri­ne, sul­fa­te-re­du­cing bac­te­ri­um Des­ul­fo­bac­te­ri­um au­to­tro­phi­cum. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 42, 409-417 (2002).

Ra­bus, R., D. Gade, R. Hel­big, M. Bau­er, F. O. Glöck­ner, M. Kube, H. Schles­ner, R. Rein­hardt and R. Amann: Ana­ly­sis of N-ace­tylg­lu­co­sa­mi­ne me­ta­bo­lism in the ma­ri­ne bac­te­ri­um Pi­rel­lu­la sp. strain 1 by a pro­teo­mic ap­proach. Pro­teo­mics 2:649-655 (2002).

Ra­bus, R., M. Kube, A. Beck, F. Wid­del and R. Rein­hardt: Ge­nes in­vol­ved in the an­ae­ro­bic de­gra­da­ti­on of ethyl­ben­ze­ne in a de­ni­tri­fy­ing bac­te­ri­um, strain EbN1. Ar­chi­ves of Mi­cro­bio­lo­gy 178:506-516 (2002).

Rees, G. N., C. G. Har­foot, P. H. Jans­sen, L. Scho­en­born, J. Kue­ver and H. Lüns­dorf: Thi­o­ba­ca true­pe­ri gen. nov., sp nov., a pho­to­tro­phic pur­p­le sul­fur bac­te­ri­um iso­la­ted from freshwa­ter lake se­di­ment. In­ter­na­tio­nal Jour­nal of Sys­te­ma­tic and Evo­lu­tio­na­ry Mi­cro­bio­lo­gy 52:671-678 (2002).

Schü­ler, D.: The bio­mi­ne­ra­liza­t­i­on of ma­gne­to­so­mes in Ma­gne­to­spi­ril­lum gry­phis­wal­den­se. In­ter­na­tio­nal Mi­cro­bio­lo­gy 5:209-214 (2002).

Vo­ordouw, G.: Car­bon mon­oxi­de cy­cling by Des­ul­fo­vi­brio vul­ga­ris Hil­den­bo­rough. Jour­nal of Bac­te­rio­lo­gy 184(21):5903-5911 (2002).

Wid­del, F.: Mi­kro­or­ga­nis­men des Mee­res - Ka­ta­ly­sa­to­ren glo­ba­ler Stoff­kreis­läu­fe. In: Rund­ge­sprä­che der Kom­mis­si­on für Öko­lo­gie, Bd. 31. pp.67-82, Baye­ri­sche Aka­de­mie der Wis­sen­schaf­ten, Ver­lag Dr. Fried­rich Pfeil, Mün­chen (2002).

Wil­kes, H., R. Ra­bus, T. Fi­scher, A. Arm­stroff, A. Beh­rends, and F. Wid­del: An­ae­ro­bic de­gra­da­ti­on of n-he­xa­ne in a de­ni­tri­fy­ing bac­te­ri­um: Fur­ther de­gra­da­ti­on of the in­iti­al in­ter­me­dia­te (1-me­thyl­pen­tyl)suc­ci­na­te via C-ske­le­ton re­ar­ran­ge­ment. Ar­chi­ves of Mi­cro­bio­lo­gy 177:235-243 (2002).

Det­mers, J., V. Brü­chert, K. Ha­bicht and J. Kue­ver: Di­ver­si­ty of sul­fur iso­to­pe frac­tio­na­ti­ons by sul­fa­te-re­du­cing pro­ka­ryo­tes. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 67(2):888-894 (2001).

Grün­berg, K., C. Wa­wer, B.M. Tebo and D. Schü­ler: A lar­ge gene clus­ter en­co­ding se­veral ma­gne­to­so­me pro­te­ins is con­ser­ved in dif­fe­rent spe­cies of ma­gne­tot­ac­tic bac­te­ria. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 67(19):4573-4582 (2001).

Knie­mey­er, O. and J. Hei­der: Ethyl­ben­ze­ne de­hy­dro­ge­na­se, a no­vel hy­dro­c­ar­bon-oxi­di­zing mo­lyb­de­num/​iron-sul­fur/​heme en­zy­me. Jour­nal of Bio­lo­gi­cal Che­mis­try 276(24):21381-21386 (2001).

Knie­mey­er, O. and J. Hei­der: (S)-1-Phe­nyle­tha­nol de­hy­dro­ge­na­se of Azo­ar­cus sp. strain EbN1, an en­zy­me of an­ae­ro­bic ethyl­ben­ze­ne ca­t­a­bo­lism. Ar­chi­ves of Mi­cro­bio­lo­gy 176:129-135 (2001).

Kue­ver, J., M. Kön­ne­ke, A. Ga­lush­ko and O. Drzyz­ga: Re­clas­si­fi­ca­ti­on of Des­ul­fo­bac­te­ri­um phe­no­li­cum as Des­ul­fo­ba­cu­la phe­no­li­ca comb. nov. and de­scrip­ti­on of strain SaxT as Des­ul­fo­ti­gnum bal­ti­cum gen. nov., sp. nov. In­ter­na­tio­nal Jour­nal of Sys­te­ma­tic and Evo­lu­tio­na­ry Mi­cro­bio­lo­gy 51:171-177 (2001).

Ra­bus, R., H. Wil­kes, A. Beh­rends, A. Arm­stroff, T. Fi­scher, A.J. Pie­rik and F. Wid­del.: An­ae­ro­bic in­iti­al re­ac­tion of n-al­ka­nes in a de­ni­tri­fy­ing bac­te­ri­um: evi­dence for (1-me­thyl­pen­tyl)suc­ci­na­te as in­iti­al pro­duct and for in­vol­ve­ment of an or­ga­nic ra­di­cal in n-he­xa­ne me­ta­bo­lism. Jour­nal of Bac­te­rio­lo­gy 183(5):1707-1715 (2001).

Sur­kov, A.V., G.A. Du­bi­ni­na, A.M. Ly­sen­ko, F.O. Glöck­ner and J. Kue­ver: De­thio­sul­fo­vi­brio rus­sen­sis sp. nov., De­thio­sul­fo­vi­brio ma­ri­nus sp. nov. and De­thio­sul­fo­vi­brio aci­da­mi­no­vor­ans sp. nov., no­vel an­ae­ro­bic, thio­sul­fa­te- and sul­fur-re­du­cing bac­te­ria iso­la­ted from 'Thi­oden­dron' sul­fur mats in dif­fe­rent sa­li­ne en­vi­ron­ments. In­ter­na­tio­nal Jour­nal of Sys­te­ma­tic and Evo­lu­tio­na­ry Mi­cro­bio­lo­gy 51:327-337 (2001).

Wid­del, F. and R. Ra­bus: An­ae­ro­bic bio­de­gra­da­ti­on of sa­tu­ra­ted and aro­ma­tic hy­drc­ar­bons. Cur­rent Opi­ni­on in Bio­tech­no­lo­gy 12:259-276 (2001).