Pu­bli­ka­tio­nen Ru­dolf Amann


Publication ID (ResearcherID: C-6534-2014)

Ci­ta­ti­on Metrics Web of Sci­ence (30th Ja­nu­a­ry 2025)

  • Total Articles in Publication List: 449
  • Sum of Times Cited: 74619
  • h-index: 131

Google Scholar (h-in­dex: 163)

 
 

2024

Miksch, S., L.H. Orellana, M. Oggerin de Orube, S. Vidal-Melgosa, V. Solanki, J.-H. Hehemann, R. Amann, K. Knittel. 2024. Ta­xo­no­mic and func­tio­nal sta­bi­li­ty over­ru­les sea­so­na­li­ty in po­lar bent­hic mi­cro­bio­mes. ISME J. 18:1-14. [doi:10.1093/ismejo/wrad005] [download pdf]
Viver, T., R.E. Conrad, L.M. Rodriguez-R, A.S. Ramírez, S.N. Venter, J. Rocha-Cárdenas, M. Llabrés, R. Amann, K.T. Konstantinidis, R. Rossello-Mora. 2024. Towards esti­ma­ting the num­ber of strains that make up a na­tu­ral bac­te­ri­al po­pu­la­ti­on. Nat. Com­mun. 15:544. [doi:10.1038/s41467-023-44622-z] [download pdf]
Brown, S., C.C. Lloyd, G. Giljan, S. Ghobrial, R. Amann, C. Arnosti. 2024. Pul­sed in­puts of high mole­cu­lar weight or­ga­nic mat­ter shift the me­cha­nisms of sub­stra­te uti­li­sa­ti­on in ma­ri­ne bac­te­ri­al com­mu­nities. En­vi­ron. Mi­cro­bi­ol. 26:e16580. [doi:10.1111/1462-2920.16580] [internal download]
Moncada, C., A. Ellrott, D. de Beer, R. Amann and K. Knittel. 2024. The Ell­rott grab: A small, light­weight se­di­ment sam­pler for collec­ting un­dis­tur­bed san­dy se­di­ments. Lim­nol. Ocea­no­gr. Meth. 22:159-69. [doi:10.1002/lom3.10598] [download pdf]
Wang, F.-Q., D. Bartosik, C. Sidhu, R. Siebers, D.C. Lu, A. Trautwein-Schult, D. Becher, B. Huettel, J. Rick, I.V. Kirstein, K.H. Wiltshire, T. Schweder, B.M. Fuchs, M.M. Bengtsson, H. Teeling, R.I. Amann. 2024. Par­ti­cle at­ta­ched bac­te­ria act as gate­kee­pers in the de­com­po­si­ti­on of com­plex phy­to­plank­ton po­ly­sac­cha­ri­des. Mi­cro­bio­me. 12:32. [doi:10.1186/s40168-024-01757-5] [download pdf]
Kalenborn, S., D. Zühlke, K. Riedel, R.I. Amann, J. Harder. 2024. Pro­teo­mic in­sight into ar­a­bi­no­g­a­lac­tan util­iz­a­tion by par­ti­cle-as­so­ci­ated Maribacter sp. MAR_2009_72. FEMS Mi­cro. Ecol. 100:fi­ae045. [doi:10.1093/femsec/fiae045] [download pdf]
Mon­cada, C., C. Ar­nos­ti, J.D. Brüwer, D. de Beer, R. Amann, K. Knit­tel. 2024. Ni­che sep­ar­a­tion in bac­te­ri­al com­mu­nit­ies and ac­tiv­it­ies in pore­wa­ter, loo­se­ly at­ta­ched, and firm­ly at­ta­ched frac­ti­ons in per­me­able sur­face sed­i­ments. ISME 18:wra­e159. [doi:10.1093/ismejo/wrae159] [download pdf]
Dede, B., E.P. Ree­ves, M. Wal­ter, W. Bach, R. Amann, A. Mey­er­dier­ks. 2024. Bac­te­ri­al che­mo­li­tho­au­to­tro­phy in ul­tra­ma­fic plu­mes along the Mid-At­lan­tic Ridge. ISME 18:wra­e165. [doi:10.1093/ismejo/wrae165] [download pdf]
Bustos-Ca­par­ros, E., T. Vi­ver, J.F. Gago, L.M. Ro­d­ri­guez-R, J.K. Hatt, S.N. Ven­ter, B.M. Fuchs, R. Amann, R. Bosch, K.T. Kon­stan­ti­ni­dis, R. Ros­sel­lo-Mora. 2024. Eco­lo­gi­cal suc­cess of ex­tre­me ha­lo­phi­les sub­jec­ted to re­cur­rent os­mo­tic dis­tur­ban­ces is pri­ma­ri­ly dri­ven by con­ge­ne­ric spe­cies re­pla­ce­ment. ISME 18:wra­e215. [doi:10.1093/ismejo/wrae215] [download pdf]
Beid­ler, I., N. Stein­ke, T. Schul­ze, C. Sid­hu, D. Bar­to­sik, M.-K. Zühl­ke, L. Tor­res Mar­tin, J. Krull, T. Dut­sch­ei, B. Fer­re­ro-Bor­de­ra, J. Rieli­cke, V. Kale, T. Sura, A. Traut­wein-Schult, I.V. Kirstein, K.H. Wiltshire, H. Tee­ling, D. Be­cher, M.M. Ben­g­ts­son, J.-H. Hehe­mann, U.T. Born­scheu­er, R.I. Amann, T. Schwe­der. 2024. Al­pha-glu­cans from bac­te­ri­al ne­cro­mass in­di­ca­te an in­tra-po­pu­la­ti­on loop wi­t­hin the ma­ri­ne car­bon cy­cle. Nat. Com­mun. 15:4048. [doi:10.1038/s41467-024-48301-5] [download pdf]
Knittel, K., S. Miksch, C. Moncada, S. Silva-Solar, J. Moye, R. Amann, C. Arnosti. 2024. Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments. En­vi­ron. Mi­cro­bi­ol. 26:e16687. [doi:10.1111/1462-2920.16687] [download pdf]
Kalenborn, S., D. Zühlke, G. Reintjes, K. Riedel, R.I. Amann and J. Harder. 2024. Genes for laminarin degradation are dispersed in the genomes of particle-associated Maribacter species. Fron­tiers Mi­cro­bi­ol. 15:1393588. [doi:10.3389/fmicb.2024.1393588] [download pdf]
Silva-Solar, S., T. Viver, Y. Wang, L.H. Orellana, K. Knittel, R. Amann. 2024.  Acidimicrobiia, the actinomycetota of coastal marine sediments: Abundance, taxonomy and genomic potential. Syst. Appl. Mi­cro­bi­ol. 47:126555. [doi:10.1016/j.syapm.2024.126555] [download pdf]
Conrad, R.E., C.E. Brink, T. Viver, L.M. Rodriguez-R, B. Aldeguer-Riquelme, J.K. Hatt, S.N. Venter, R. Rossello-Mora, R. Amann, K.T. Konstantinidis. 2024. Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination. Nat. Com­mun. 15:9906. [doi:10.1038/s41467-024-53787-0] [download pdf]

 

2023

Giljan, G., S. Brown, C.C. Lloyd, S. Ghobrial, R. Amann, and C. Arnosti. 2023. Sel­fish bac­te­ria are ac­tive throughout the wa­ter co­lumn of the oce­an. ISME com­mun. 3:e11. [doi:10.1038/s43705-023-00219-7] [download pdf]
Dede, B., T. Priest, W. Bach, M. Walter, R. Amann, and A. Meyerdierks. 2023. High ab­un­dance of hy­dro­c­ar­bon-de­gra­ding Alcanivorax in plu­mes of hydro­ther­mal­ly ac­tive vol­ca­noes in the South Pa­ci­fic Oce­an. ISME. 17:600-10. [doi:10.1038/s41396-023-01366-4] [download pdf]
Rossello-Mora R., K.T. Konstantinidis, and R. Amann. 2023. Edi­to­ri­al: How Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy will deal with two no­men­cla­tu­re codes (ICNP and Se­q­Code) for pro­ka­ryo­tes, and which clas­si­fi­ca­ti­on stan­dards are re­com­men­ded for new taxa de­scrip­ti­ons. Syst. Appl. Mi­cro­bi­ol. 46:126371. [doi:10.1016/j.syapm.2022.126371] [download pdf]
Reintjes, G., A. Heins, C. Wang, and R. Amann. 2023. Ab­un­dance and com­po­si­ti­on of par­ti­cles and their at­ta­ched mi­cro­bio­mes along an At­lan­tic Me­r­idio­nal Tran­sect. Front. Mar. Sci. 10:1051510. [doi:10.3389/fmars.2023.1051510] [download pdf]
Viver, T., R.E. Conrad, M. Lucio, M. Harir, M. Urdiain, J.F. Gago, A. Suárez-Suárez, E. Bustos-Caparros, R. Sanchez-Martinez, E. Mayol, F. Fassetta, J. Pang, I.M. Gridan, S. Venter, F. Santos, B. Baxter, M.E. Llames, A. Cristea, H.L. Banciu, B.P. Hedlund, M.B. Stott, P. Kämpfer, R. Amann, P. Schmitt-Kopplin, K.T. Konstantinidis, and R. Rossello-Mora. 2023. De­scrip­ti­on of two cul­ti­va­ted and two un­cul­ti­va­ted new Sa­li­ni­bac­ter spe­cies, one na­med fol­lo­wing the ru­les of the bac­te­rio­lo­gi­cal code: Salinibacter grassmerensis sp. nov.; and three na­med fol­lo­wing the ru­les of the Se­q­Code: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov. Syst. Appl. Mi­cro­bi­ol. 46:126416. [doi:10.1016/j.syapm.2023.126416] [download pdf]
Sidhu, C., I.V. Kirstein, C.L. Meunier, J. Rick, V. Fofonova, K.H. Wiltshire, N. Steinke, S. Vidal-Melgosa, J.-H. Hehemann, B. Huettel, T. Schweder, B.M. Fuchs, R.I. Amann, and H. Teeling. 2023. Dis­sol­ved sto­r­a­ge gly­cans shaped the com­mu­ni­ty com­po­si­ti­on of ab­un­dant bac­te­rio­plank­ton cla­des du­ring a North Sea spring phy­to­plank­ton bloom. Mi­cro­bio­me. 11:77. [doi:10.1186/s40168-023-01517-x] [download pdf]
Orellana, L.H., K. Krüger, C. Sidhu, R. Amann. 2023. Com­pa­ring ge­no­mes re­co­ve­r­ed from time-se­ries me­ta­ge­no­mes using long- and short-read se­quen­cing tech­no­lo­gies. Mi­cro­bio­me 11:105. [doi:10.1186/s40168-023-01557-3] [download pdf]

Brüwer, J.D., H.L. Orellana, C. Sidhu, H.C.L. Klip, C.L. Meunier, M. Boersma, K.H. Wiltshire, R. Amann, B.M. Fuchs and J.-B. Raina. 2023. In situ cell di­vi­si­on and mor­ta­li­ty ra­tes of SAR11, SAR86, Bacteroidetes, and Aurantivirga du­ring phy­to­plank­ton blooms re­veal dif­fe­ren­ces in po­pu­la­ti­on con­trols. mSys­tems, En­vi­ron. Mi­cro­bi­ol. 8:e01287-22. [doi:10.1128/msystems.01287-22] [download pdf]

Priest, T., W.-J. von Appen, E. Oldenburg, O. Popa, S. Torres-Valdés, C. Bienhold, K. Metfies, W. Boulton, T. Mock, B.M. Fuchs, R. Amann, A. Boetius, M. Wietz. 2023. At­lan­tic wa­ter in­flux and sea-ice co­ver dri­ve ta­xo­no­mic and func­tio­nal shifts in Arc­tic ma­ri­ne bac­te­ri­al com­mu­nities. ISME J. 17:1612-25. [doi:10.1038/s41396-023-01461-6] [download pdf]
Liu, Y., T. Brinkhoff, M. Berger, A. Poehlein, S. Voget, L. Paoli, S. Sunagawa, R. Amann and M.Simon. 2023. Me­ta­ge­no­me-as­sem­bled ge­no­mes re­veal great­ly ex­pan­ded ta­xo­no­mic and func­tio­nal di­ver­si­fi­ca­ti­on of the ab­un­dant ma­ri­ne Roseobacter RCA clus­ter. Mi­cro­bio­me 11:265. [doi:10.1186/s40168-023-01644-5] [download pdf]
Rodriguez-R, L.M., R.E. Conrad, T. Viver, D.J. Feistel, B.G. Lindner, S.N. Venter, L.H. Orellana, R. Amann, R. Rossello-Mora, K.T. Konstantinidis. 2023. An ANI gap wi­t­hin bac­te­ri­al spe­cies that ad­van­ces the de­fi­ni­ti­ons of in­tra-spe­cies units. mBio 15:e02696-23. [doi:10.1128/mbio.02696-23] [download pdf]
Lu, D.-C., F.-Q. Wang, R.I. Amann, H. Teeling and Z.-J. Du. 2023. Epi­phytic com­mon core bac­te­ria in the mi­cro­bio­mes of co-lo­ca­ted green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) ma­cro­al­gae. Mi­cro­bio­me. 11:126. [doi.org/10.1186/s40168-023-01559-1] [download pdf]
Priest T., S. Vidal-Melgosa, J.-H. Hehemann, R. Amann and B.M. Fuchs. 2023. Car­bo­hy­dra­tes and car­bo­hy­dra­te de­gra­da­ti­on gene ab­un­dance and tran­scrip­ti­on in At­lan­tic wa­ters of the Arc­tic. ISME Com­mun. 3:130. [doi.org/10.1038/s43705-023-00324-7] [download pdf]

 

2022

Priest, T.,  A. Heins, J. Harder, R. Amann, and B.M. Fuchs. 2022. Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group. ISME J. 16:1570-82. [doi:10.1038/s41396-022-01209-8] [download pdf]
Dede, B., C.T. Hansen, R. Neuholz, B. Schnetger, C. Kleint, S. Walker, W. Bach, R. Amann, and A. Meyerdierks. 2022. Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. ISME J. 16:1479-90. [doi:10.1038/s41396-022-01195-x] [download pdf]

Solanki, V., K. Krüger, C.J. Crawford, A. Pardo-Vargas, J. Danglad-Flores, K. Le Mai Hoang,  L. Klassen, D.W. Abbott, P.H. Seeberger, R.I. Amann, H. Teeling, J.-H. Hehemann. 2022. Gly­co­si­de hy­dro­la­se from the GH76 fa­mi­ly in­di­ca­tes that ma­ri­ne Sa­le­gen­ti­bac­ter sp. Hel_I_6 con­su­mes al­pha-man­n­an from fun­gi. ISME J. 16:1818-30. [doi:10.1038/s41396-022-01223-w] [download pdf]

Giljan, G., C. Arnosti, I.V. Kirstein, R. Amann, and B.M. Fuchs. 2022. Strong sea­so­nal dif­fe­ren­ces of bac­te­ri­al po­ly­sac­cha­ri­de uti­liza­t­i­on in the North Sea over an an­nu­al cy­cle. En­vi­ron. Mi­cro­bi­ol. 24:2333-47. [doi:10.1111/1462-2920.15997] [download pdf]

Orellana, L.H., T.B. Francis, M. Ferraro, J.H. Hehemann, B.M. Fuchs, and R.I. Amann. 2022. Verrucomicrobiota are spe­cia­list con­su­mers of sul­fa­ted me­thyl pen­to­ses du­ring dia­tom blooms. ISME J. 16:630-41. [doi:10.1038/s41396-021-01105-7] [download pdf]

Bartlau, N., A. Wichels, G. Krohne, E.M. Adriaenssens, A. Heins, B.M. Fuchs, R. Amann, C. Moraru. 2022. High­ly di­ver­se flav­o­bac­te­ri­al pha­ges iso­la­ted from North Sea spring blooms. ISME J. 16:555–68. [doi:10.1038/s41396-021-01097-4] [download pdf]

Alonso, C., E. Pereira, F. Bertoglio, M. De Caceres, and R. Amann. 2022. Bac­te­rio­plank­ton com­po­si­ti­on as an in­di­ca­tor of en­vi­ron­men­tal sta­tus: pro­of of prin­ciple using in­di­ca­tor va­lue ana­ly­sis of es­tua­ri­ne com­mu­nities. Aqua­tic Mi­crob. Ecol. 88:1-18. [doi:10.3354/ame01979] [download pdf]

 

2021

Zeugner, L.E., K. Krüger, J. Barrero-Canosa, R.I. Amann, and B.M. Fuchs.  2021. In situ vi­sua­liza­t­i­on of gly­co­si­de hy­dro­la­se fa­mi­ly 92 ge­nes in ma­ri­ne flav­o­bac­te­ria.  ISME Com­mun. 1:81. [doi:10.1038/s43705-021-00082-4] [download pdf]
Francis, B., T. Urich, A. Mikolasch, H. Teeling, and R. Amann. 2021. North Sea spring bloom-as­so­cia­ted Gammaproteobacteria fill di­ver­se he­te­ro­tro­phic ni­ches. Env. Mi­cro­bio­me 16:15.  [doi:10.1186/s40793-021-00385-y] [download pdf]
Brunet, M., N. Le Duff, B.M. Fuchs, R. Amann, T. Barbeyron, F. Thomas. 2021. Spe­ci­fic de­tec­tion and quan­ti­fi­ca­ti­on of the ma­ri­ne flav­o­bac­te­ri­al ge­nus Zobellia on ma­cro­al­gae using no­vel qPCR and CARD-FISH as­says. Syst. Appl. Mi­cro­bi­ol. 44:126269. [doi:10.1016/j.syapm.2021.126269]
Alejandre-Colomo, C., B. Francis, T. Viver, J. Harder, B.M. Fuchs, R. Rossello-Mora, and R. Amann. 2021. Cul­tiva­ble Winogradskyella spe­cies are ge­no­mi­cal­ly dis­tinct from the sym­pa­tric ab­un­dant can­di­da­te spe­cies. ISME Com­mun. 1:51. [doi:10.1038/s43705-021-00052-w] [download pdf]
Heins, A., R.I. Amann, J. Harder. 2021. Cul­ti­va­ti­on of par­ti­cle-as­so­cia­ted he­te­ro­tro­phic bac­te­ria du­ring a spring phy­to­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­bi­ol. 44:126232. [doi:10.1016/j.syapm.2021.126232]
Priest, T., L.H. Orellana, B. Huettel, B.M. Fuchs, R. Amann. 2021. Mi­cro­bial meta­gen­ome-as­sem­bled gen­omes of the Fram Strait from short and long read se­quen­cing plat­forms. PeerJ 9:e11721. [doi:10.7717/peerj.11721] [download pdf]
Miksch, S., M. Mei­ners, A. Mey­er­dier­ks, D. Pro­bandt, G. We­ge­ner, J. Tit­schack, M.A. Jen­sen, A. Ell­rott, R. Amann and K. Knit­tel. 2021. Bac­te­ri­al com­mu­nit­ies in tem­pe­ra­te and po­lar co­as­tal sands are sea­so­nal­ly sta­ble. ISME Com­mun. 1:29. [doi:10.1038/s43705-021-00028-w] [download pdf]
Ludwig, W., T. Viver, R. Westram, J.F. Gago, E. Bustos-Caparros, K. Knittel, R. Amann, R. Rossello-Mora. 2021. Re­lease LT­P_12_2020, fea­turing a new ARB ali­gn­ment and im­pro­ved 16S rRNA tree for pro­ka­ryo­tic type strains. Syst. Appl. Mi­cro­bi­ol. 44:126218. [doi:10.1016/j.syapm.2021.126218]
Heins, A., G. Reintjes, R.I. Amann, J. Harder. 2021. Par­ti­cle Collec­tion in Im­hoff Se­di­men­ta­ti­on Co­nes En­ri­ches Both Mo­ti­le Che­mot­ac­tic and Par­ti­cle-At­ta­ched Bac­te­ria. Front. Mi­cro­bi­ol. 12:643730. [doi:10.3389/fmicb.2021.643730] [download pdf]
Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Anton, K.T. Konstantinidis, R. Rosselló-Móra. 2021. Dis­tinct eco­ty­pes wi­t­hin a na­tu­ral ha­lo­ar­chae­al po­pu­la­ti­on enable ad­ap­ta­ti­on to chan­ging en­vi­ron­men­tal con­di­ti­ons wi­thout cau­sing po­pu­la­ti­on sweeps. ISME J. 15:1178-91. [doi:10.1038/s41396-020-00842-5] [internal download]
Arnosti, C., M. Wietz, T. Brinkhoff, J.H. Hehemann, D. Probandt, L. Zeugner, and R. Amann. 2021. The Bio­geo­che­mis­try of Ma­ri­ne Po­ly­sac­cha­ri­des: Sour­ces, In­ven­to­ries, and Bac­te­ri­al Dri­vers of the Car­bo­hy­dra­te Cy­cle. Ann. Rev. Mar. Sci. 13:81-108. [doi:10.1146/annurev-marine-032020-012810] [internal download]
Francis, T.B., D. Bartosik, T. Sura, A. Sichert, J.H. Hehemann, S. Markert, T. Schweder, B.M. Fuchs, H. Teeling, R.I. Amann, and D. Becher. 2021. Chan­ging ex­pres­si­on pat­terns of TonB-de­pen­dent trans­por­ters sug­gest shifts in po­ly­sac­cha­ri­de con­sump­ti­on over the cour­se of a spring phy­to­plank­ton bloom. ISME J. 15:2336-50. [doi:10.1038/s41396-021-00928-8] [download pdf]
Klassen, L., G. Reintjes, J.P. Tingley, D.R. Jones, J.H. Hehemann, A.D. Smith, T.D. Schwinghamer, C. Arnosti, L. Jin, T.W. Alexander, D. Thomas, R.I. Amann, T.A. McAllister, and D.W. Abbott. 2021. Quan­ti­fy­ing fluo­re­scent gly­can uptake to elu­ci­da­te strain-le­vel va­ria­bi­li­ty in fo­r­a­ging be­ha­vi­ors of ru­men bac­te­ria. Mi­cro­bio­me 9:23. [doi:10.1186/s40168-020-00975-x] [download pdf]
Priest, T., B. Fuchs, R. Amann, and M. Reich. 2021. Di­ver­si­ty and bio­mass dy­na­mics of unicel­lu­lar ma­ri­ne fun­gi du­ring a spring phy­to­plank­ton bloom. En­vi­ron. Mi­cro­bi­ol. 23:448-463. [doi:10.1111/1462-2920.15331] [download pdf]
Vidal-Melgosa, S., A. Sichert, T.B. Francis, D. Bartosik, J. Niggemann, A. Wichels, W.G.T. Willats, B.M. Fuchs, H. Teeling, D. Becher, T. Schweder, R.I. Amann, and J.H. Hehemann. 2021. Dia­tom fu­can po­ly­sac­cha­ri­de pre­ci­pi­ta­tes car­bon du­ring al­gal blooms. Na­tu­re Com­mun. 12:1150. [doi:10.1038/s41467-021-21009-6] [download pdf]
Isaac, A., B. Francis, R.I. Amann, S.A. Amin. 2021. Tight Ad­he­rence (Tad) Pi­lus Ge­nes In­di­ca­te Pu­ta­ti­ve Ni­che Dif­fe­ren­tia­ti­on in Phy­to­plank­ton Bloom As­so­cia­ted Rhodobacterales. Front. Mi­cro­bi­ol. 12:718297. [doi:10.3389/fmicb.2021.718297] [download pdf]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R.I., and F. Aspetsberger. 2021. Sü­ßes Fest­mahl mit meh­re­ren Gän­gen: wie Bak­te­ri­en Al­gen ver­na­schen. BiuZ 51:66-73. [doi:10.11576/biuz-4104] [download pdf]

 

2020

Reintjes, G., B.M. Fuchs, R. Amann, and C. Arnosti. 2020. Ex­ten­si­ve Mi­cro­bi­al Pro­ces­sing of Po­ly­sac­cha­ri­des in the South Pa­ci­fic Gyre via Sel­fish Uptake and Ex­tra­cel­lu­lar Hy­dro­ly­sis. Front. Mi­cro­bi­ol. 11:583158. [doi:10.3389/fmicb.2020.583158] [download pdf]
Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Antón, K.T. Konstantinidis, and R. Rosselló-Móra. 2020. Dis­tinct eco­ty­pes wi­t­hin a na­tu­ral ha­lo­ar­chae­al po­pu­la­ti­on enable ad­ap­ta­ti­on to chan­ging en­vi­ron­men­tal con­di­ti­ons wi­thout cau­sing po­pu­la­ti­on sweeps. ISME J. On­line ahead of print. [doi:10.1038/s41396-020-00842-5]
Alejandre-Colomo, C., T. Viver, M.Urdiain, B. Francis, J. Harder, P. Kämpfer, R. Amann, and R. Rosselló-Móra. 2020. Ta­xo­no­mic stu­dy of nine new Winogradskyella spe­cies oc­cur­ring in the shal­low wa­ters of Hel­go­land Roads, North Sea. Pro­po­sal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella vidalii sp. nov., Winogradskyella forsetii sp. nov., Winogradskyella ludwigii sp. nov., Winogradskyella ursingii sp. nov., Winogradskyella wichelsiae sp. nov., and Candidatus “Wi­no­gradsky­el­la at­lan­ti­ca” sp. nov. Syst. Appl. Mi­cro­bi­ol. 43:126128. [doi:10.1016/j.syapm.2020.126128]
Murray, A.E., J. Freudenstein, S. Gribaldo, R. Hatzenpichler, P. Hugenholtz, P.  Kämpfer, K.T. Konstantinidis, C.E. Lane, R.T. Papke, D.H. Parks, R. Rossello-Mora, M.B. Stott, I.C. Sutcliffe, J.C. Thrash, S.N. Venter, W.B. Whitman, S.G. Acinas, R.I. Amann, K. Anantharaman, J. Armengaud, B.J. Baker, R.A. Barco, H.B. Bode, E.S. Boyd, C.L. Brady, P. Carini, P.S.G. Chain, D.R. Colman, K.M. DeAngelis, D. de Los Rios MA, Estrada-de Los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard, P.R. Girguis, U. Hentschel, J.T. Hollibaugh, L.A. Hug, W.P. Inskeep, E.P. Ivanova, H.P. Klenk, W.J. Li, K.G. Lloyd, F.E. Löffler, T.P. Makhalanyane, D.P. Moser, T. Nunoura, M. Palmer, V. Parro, C. Pedrós-Alió, A.J. Probst, T.H.M. Smits, A.D. Steen, E.T. Steenkamp, A. Spang, F.J. Stewart, J.M. Tiedje, P. Vandamme, M. Wagner, F.P. Wang, P. Yarza, B.P. Hedlund, A.L. Reysenbach. 2020. Road­map for na­ming un­cul­ti­va­ted Ar­chaea and Bac­te­ria. Nat. Mi­cro­bi­ol. 5:987-94. [doi:10.1038/s41564-020-0733-x] [download pdf]
Grieb, A., T.B. Francis, K. Krüger, L.H. Orellana Retamal, R.I. Amann, and B.M. Fuchs. 2020.  Candidatus Ab­di­ti­bac­ter, a no­vel ge­nus wi­t­hin the Cryomorphaceae, thri­ving in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126088. [doi:10.1016/j.syapm.2020.126088] [download pdf]
Hahn, C.J., R. Laso-Perez, F. Vulcano, K.-M. Vaziorakis, R. Stokke, I.H. Steen, A. Teske, M. Liebeke, K. Knittel, R. Amann and G. Wegener. 2020. "Candidatus Etha­nope­redens," a Ther­mo­phi­lic Ge­nus of Archaea Me­dia­ting the An­ae­ro­bic Oxi­da­ti­on of Etha­ne. mBio 11:e00600-20. [doi:10.1128/mBio.00600-20] [download pdf]
Giljan, G., N.A. Kamennaya, A. Otto, D. Becher, A. Ellrott, V. Meyer, B.J. Murton, B.M. Fuchs, R.I. Amann, and M.V. Zubkov. 2020. Bac­te­rio­plank­ton re­veal ye­ars-long re­ten­ti­on of At­lan­tic deep-oce­an wa­ter by the tro­pic Se­a­m­ount. Sci­ent. Rep. 10:4715. [doi:10.1038/s41598-020-61417-0] [download pdf]
Avci, B., K. Krüger, B.M. Fuchs, H. Teeling, R.I. Amann. 2020. Po­ly­sac­cha­ri­de ni­che par­ti­tio­n­ing of dis­tinct Polaribacter cla­des du­ring North Sea spring al­gal blooms. ISME J. 14:1369-83. [doi:10.1038/s41396-020-0601-y] [download pdf]
Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. 2020. Ad­van­ta­ges out­weigh con­cerns about using ge­no­me se­quence as type ma­te­ri­al for pro­ka­ryo­tic ta­xo­no­my. En­vi­ron. Mi­cro­bi­ol. 22:819-22. [doi:10.1111/1462-2920.14934] [internal download]
Alejandre-Colomo, C., J. Harder, B.M. Fuchs, R. Rosselló-Móra, R. Amann. 2020. High-through­put cul­ti­va­ti­on of he­te­ro­tro­phic bac­te­ria du­ring a spring phy­to­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126066. [doi:10.1016/j.syapm.2020.126066] [internal download]
Munoz, R., H. Teeling, R. Amann, R. Rosselló-Móra. 2020. An­ce­stry and ad­ap­ti­ve ra­dia­ti­on of Bacteroidetes as as­ses­sed by com­pa­ra­ti­ve ge­no­mics. Syst. Appl. Mi­cro­bi­ol. 43:126065. [doi:10.1016/j.syapm.2020.126065] [internal download]
Reintjes, G., B.M. Fuchs, M. Scharfe, K.H. Wiltshire, R. Amann, C. Arnosti. 2020. Short-term chan­ges in po­ly­sac­cha­ri­de uti­liza­t­i­on me­cha­nisms of ma­ri­ne bac­te­rio­plank­ton du­ring a spring phy­to­plank­ton bloom. En­vi­ron. Mi­cro­bi­ol. 22:1884-1900. [doi:10.1111/1462-2920.14971] [internal download]
Wiegand, S., M. Jogler, C. Boedeker, D. Pinto, J. Vollmers, E. Rivas-Marín, T. Kohn, S.H. Peeters, A. Heuer, P. Rast, S. Oberbeckmann, B. Bunk, O. Jeske, A. Meyerdierks, J. E. Storesund, N. Kallscheuer, S. Lücker, O.M. Lage, T. Pohl, B.J. Merkel, P. Hornburger, R.-W. Müller, F. Brümmer, M. Labrenz, A.M. Spormann, H.J.M. Op den Camp, J. Overmann, R. Amann, M.S.M. Jetten, T. Mascher, M.H. Medema, D.P. Devos, A.-K. Kaster, L. Øvreås, M. Rohde, M.Y. Galperin, C. Jogler. 2020. Cul­ti­va­ti­on and func­tio­nal cha­rac­te­riza­t­i­on of 79 Planctomycetes un­co­vers their uni­que bio­lo­gy. Na­tu­re Mi­cro­bi­ol. 5:126-40. [doi:10.1038/s41564-019-0588-1] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Schweder, T., U. Bornscheuer, J.H. Hehemann, R. Amann. 2020. Bak­te­ri­el­le Me­cha­nis­men der ma­ri­nen Po­ly­sac­cha­ridver­wer­tung. BIO­spek­trum 26:800-2. [doi:10.1007/s12268-020-1489-9] [download pdf]

 

2019

Orellana, L.H., T.B. Francis, K. Krüger, H. Teeling, M.-C. Müller, B.M. Fuchs, K.T. Kon­stantin­idis, and R.I. Amann. 2019. Ni­che dif­fer­en­ti­ati­on among an­nu­ally re­cur­rent co­as­tal Mar­ine Group II Eu­ryar­chae­ota. ISME J. 13:3024-36. [doi:10.1038/s41396-019-0491-z] [download pdf]

Schada von Borzyskowski, L., F. Severi, K. Krüger, L. Hermann, A. Gilardet, F. Sippel, B. Pommerenke, P. Claus, N.S. Cortina, T. Glatter, S. Zauner, J. Zarzycki, B.M. Fuchs, E. Bremer, U.G. Maier, R.I. Amann, T.J. Erb. 2019. Ma­ri­ne Pro­te­ob­ac­te­ria me­ta­bo­li­ze gly­co­la­te via the beta-hy­droxyas­par­ta­te cy­cle. Na­tu­re. 575:500-4. [doi:10.1038/s41586-019-1748-4] [internal download]

Krüger, K., M. Chafee, T. Ben Francis, T.G. del Rio, D. Becher, T. Schweder, R.I. Amann, H. Teeling. 2019. In ma­ri­ne Bacteroidetes the bulk of gly­can de­gra­da­ti­on du­ring al­gae blooms is me­dia­ted by few cla­des using a re­stric­ted set of ge­nes. ISME J. 13:2800-16. [doi:10.1038/s41396-019-0476-y] [download pdf]

Viver, T., L.H. Orellana, S. Diaz, M. Urdiain, M.D. Ramos-Barbero, J.E. Gonzalez-Pastor, A. Oren, J.K. Hatt, R. Amann, J. Anton, K.T. Konstantinidis, R. Rossello-Mora. 2019. Pre­do­mi­nan­ce of de­ter­mi­nis­tic mi­cro­bi­al com­mu­ni­ty dy­na­mics in sal­terns ex­po­sed to dif­fe­rent light in­ten­si­ties. En­vi­ron. Mi­crio­bi­ol. 21:4300-15. [doi:10.1111/1462-2920.14790] [internal download]

Pjevac, P., S. Dyksma, T. Goldhammer, I. Mujakic, M. Koblizek, M. Mussmann, R. Amann, S. Orlic. 2019. In situ ab­un­dance and car­bon fixa­ti­on ac­tivi­ty of dis­tinct an­oxy­ge­nic pho­to­tro­phs in the stra­ti­fied sea­wa­ter lake Ro­goz­ni­ca. En­vi­ron. Mi­crio­bi­ol. 21:3896-908. [doi:10.1111/1462-2920.14739] [internal download]

Reint­jes, G., H.E. Te­get­mey­er, M. Bür­gis­ser, S. Or­lić, I. Tews, M. Zub­kov, D. Voß, O. Zie­lin­ski, C. Quast, F.O. Glöck­ner, R. Amann, T.G. Fer­de­l­man, B.M. Fuchs. 2019. On site ana­ly­sis of bac­te­ri­al com­mu­nit­ies of the ul­tra-oli­go­tro­phic South Pa­ci­fic Gyre. Appl. En­vi­ron. Mi­cro­bi­ol. 85(14). [doi:10.1128/AEM.00184-19] [internal download]

Ramirez, A.S., O.M. Vega-Orellana, T. Viver, J.B. Poveda, R.S. Rosales, C.G. Poveda, J. Spergser, M.P. Szostak, M.J. Caballero, L. Ressel, J.M. Bradbury, M.M. Tavio, S. Karthikeyan, R. Amann, K.T. Konstantinidis, R. Rossello-Mora. 2019. First de­scrip­ti­on of two mo­dera­te­ly ha­lo­phi­lic and psy­chro­to­le­rant Mycoplasma spe­cies iso­la­ted from ce­pha­lo­pods and pro­po­sal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov. Syst. Appl. Mi­cro­bi­ol. 42:457-67. [doi:10.1016/j.syapm.2019.04.003]

Hehemann, J.H., G. Reintjes, L. Klassen, A.D. Smith, D. Ndeh, C. Arnosti, R. Amann, D.W. Abbott. 2019. Sin­gle cell fluo­re­scence ima­ging of gly­can uptake by in­tes­ti­nal bac­te­ria. ISME J. 13:1883-89. [doi:10.1038/s41396-019-0406-z] [download pdf]

Reintjes, G., C. Arnosti, B. Fuchs, R. Amann. 2019. Sel­fish, sharing and sca­ven­ging bac­te­ria in the At­lan­tic Oce­an: a bio­geo­gra­phi­cal stu­dy of bac­te­ri­al sub­stra­te uti­li­sa­ti­on. ISME J. 13:1119-32. [doi:10.1038/s41396-018-0326-3] [download pdf]

Meier, D.V., P. Pje­vac, W. Bach, S. Mark­ert, T. Schweder, J. Jam­ieson, S. Petersen, R. Amann, and A. Meyerdierks. 2019. Mi­cro­bial me­tal-sulf­ide ox­id­a­tion in in­act­ive hy­dro­ther­mal vent chim­neys sug­ges­ted by meta­ge­n­omic and meta­pro­teo­mic ana­ly­ses. En­vi­ron. Mi­crio­bi­ol. 21:682-701.[doi:10.1111/1462-2920.14514] [internal download]

Amann, R.I., S. Baichoo, B.J. Blencowe, P. Bork, M. Borodovsky, C. Brooksbank, P.S.G. Chain, R.R. Colwell, D.G. Daffonchio, A. Danchin, V. de Lorenzo, P.C. Dorrestein, R.D. Finn, C.M. Fraser, J.A. Gilbert, S.J. Hallam, P. Hugenholtz, J.P.A. Ioannidis, J.K. Jansson, J.F. Kim, H.-P. Klenk, M.G. Klotz, R. Knight, K.T. Konstantinidis, N.C. Kyrpides, C.E. Mason, A.C. McHardy, F. Meyer, C.A. Ouzounis, A.A.N. Patrinos, M. Podar, K.S. Pollard, J. Ravel, A. Reyes Muñoz, R.J. Roberts, R. Rosselló-Móra, S.-A. Sansone, P.D. Schloss, L.M. Schriml, J.C. Setubal, R. Sorek, R.L. Stevens, J.M. Tiedje, A. Turjanski, G.W. Tyson, D.W. Ussery, G.M. Weinstock, O. White, W.B. Whitman, I. Xenarios. 2019. Towards un­re­stric­ted use of pu­blic ge­no­mic data. Sci­ence 363:350-2. [doi:10.1126/science.aaw1280] [internal download]

Konstantinidis, K.T., R. Rossello-Mora, and R. Amann. 2019. Mo­ving the ca­ta­lo­guing of the "un­cul­ti­va­ted ma­jo­ri­ty" for­ward. Syst. Appl. Mi­cro­bi­ol. 42:3-4. [doi:10.1016/j.syapm.2018.12.001] [internal download]

Francis, T.B., K. Krüger, B.M. Fuchs, H. Teeling, and R.I. Amann. 2019. Candidatus Pro­si­li­i­coc­cus ver­nus, a spring phy­to­plank­ton bloom as­so­cia­ted mem­ber of the Flavobacteriaceae. Syst. Appl. Mi­cro­bi­ol. 42:41-53. [doi:10.1016/j.syapm.2018.08.007] [internal download]

Kappelmann, L., K. Krüger, J.H. Hehemann, J. Harder, S. Markert, F. Unfried, D. Becher, N. Shapiro, T. Schweder, R.I. Amann, and H. Teeling. 2019. Po­ly­sac­cha­ri­de uti­liza­t­i­on loci of North Sea Flavobacteriia as ba­sis for using SusC/​D-pro­te­in ex­pres­si­on for pre­dic­ting ma­jor phy­to­plank­ton gly­cans. ISME J. 13:76-91. [doi:10.1038/s41396-018-0242-6] [download pdf]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R.. 2019. Das Früh­jahrs­mi­kro­bi­om der süd­li­chen Nord­see: Bac­te­rio­plank­ton-Suk­zes­sio­nen und bak­te­ri­el­le Po­ly­sac­cha­ridver­wer­tung in ei­nem Küs­ten­meer. In: Die unbekannte Welt der Mikrobiome - Rundgespräche Forum Ökologie, pp. 31-41. Bay­ri­sche Aka­de­mie der Wis­sen­schaf­ten (Eds.) Ver­lag Dr. Pfeil, Mün­chen, Ger­ma­ny. [download pdf]
Amann, R., D. Schüler. 2019. Mit mo­der­nen Me­tho­den zu ma­gne­ti­schen Mi­kro­ben. BIO­spek­trum 25:18-21.  [doi:10.1007/s12268-019-0993-2]
Amann, R.. 2019. Öffent­li­che Se­quenz­da­ten soll­ten rasch wirk­lich frei zu­gäng­lich sein! BIO­spek­trum 25:119. [doi:10.1007/s12268-019-1016-z] [download pdf]

 

2018

Unfried, F., S. Becker, C.S. Robb, J.H. Hehemann, S. Markert, S.E. Heiden, T. Hinzke, D. Becher, G. Reintjes, K. Krüger, B. Avcı, L. Kappelmann, R.L. Hahnke, T. Fischer, J. Harder, H. Teeling, B. Fuchs, T. Barbeyron, R.I. Amann, and T. Schweder. 2018. Ad­ap­ti­ve me­cha­nisms that pro­vi­de com­pe­ti­ti­ve ad­van­ta­ges to ma­ri­ne bac­te­ro­ide­tes du­ring mi­cro­al­gal blooms. ISME J. 12:2894-906. [doi:10.1038/s41396-018-0243-5] [download pdf]
Chen, J., C.S. Robb, F. Unfried, L. Kappelmann, S. Markert, T. Song, J. Harder, B. Avcı, D. Becher, P. Xie, R.I. Amann, J.H. Hehemann, T. Schweder, and H. Teeling. 2018. Al­pha- and beta-man­n­an uti­liza­t­i­on by ma­ri­ne Bacteroidetes. En­vi­ron. Mi­cro­bi­ol. 20:4127-40. [doi:10.1111/1462-2920.14414] [download pdf]
Arnosti, C., G. Reintjes, R. Amann. 2018. A me­cha­nis­tic mi­cro­bi­al un­der­pin­ning for the size-re­ac­tivi­ty con­ti­nu­um of dis­sol­ved or­ga­nic car­bon de­gra­da­ti­on. Mar. Chem. 206:91-9. [doi:10.1016/j.marchem.2018.09.008] [internal download]
Jiao, N.Z., R.H. Cai, Q. Zheng, K. Tang, J.H. Liu, F.L.E Jiao, D. Wallace, F. Chen, C. Li, R. Amann, R. Benner, and F. Azam. 2018. Un­vei­ling the enig­ma of re­frac­to­ry car­bon in the oce­an. Natl. Sci. Rev. 5:459-63. [doi:10.1093/nsr/nwy020] [internal download]
Viver, T., L. Orellana, P. González-Torres, S. Díaz, M. Urdiain, M.E. Farías, V. Benes, P. Kaempfer, A. Shahinpei, M. Ali Amoozegar, R. Amann, J. Antón, K.T. Konstantinidis, R. Rosselló-Móra. 2018. Ge­no­mic com­pa­ri­son bet­ween mem­bers of the Salinibacteraceae fa­mi­ly, and de­scrip­ti­on of a new spe­cies of Salinibacter (Salinibacter altiplanensis sp. nov.) iso­la­ted from high alti­tu­de hy­per­sa­li­ne en­vi­ron­ments of the Ar­gen­ti­ni­an Al­ti­pla­no.  Syst. Appl. Mi­cro­bi­ol. 41:198-212. [doi:10.1016/j.syapm.2017.12.004] [internal download]
Pjevac, P., D.V. Meier, S. Markert, C. Hentschker, T. Schweder, D. Becher, H.R. Gruber-Vodicka, M. Richter, W. Bach, R. Amann, and A. Meyerdierks. 2018. Me­ta­pro­teo­ge­no­mic Pro­filing of Mi­cro­bi­al Com­mu­nities Co­lo­ni­zing Ac­tive­ly Ven­ting Hydro­ther­mal Chim­neys. Fron­tiers Mi­cro­bi­ol. 9:680. [doi:10.3389/fmicb.2018.00680] [download pdf]
Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. 2018. Re­ply to the com­men­ta­ry “Un­cul­ti­va­ted mi­cro­bes—in need of their own no­men­cla­tu­re?”. ISME J. 12:653-4. [doi:10.1038/s41396-017-0011-y] [internal download]
Pro­bandt, D., T. Eick­horst, A. Ellrott, R. Amann, and K. Knit­tel. 2018. Mi­cro­bi­al life on a sand grain: from bulk se­di­ment to sin­gle grains. ISME J. 12:623-33. [doi:10.1038/ismej.2017.197] [download pdf]
Chafee, M., A. Fernandez-Guerra, P.L. Buttigieg, G. Gerdts, A.M. Eren, H. Teeling, and R.I. Amann. 2018. Re­cur­rent pat­terns of mi­cro­di­ver­si­ty in a tem­pe­ra­te co­as­tal ma­ri­ne en­vi­ron­ment. ISME J. 12:237-52. [doi:10.1038/ismej.2017.165] [download pdf]

 

2017

Munoz, R., R. Rossello-Mora, R. Amann. 2017. Cor­ri­gen­dum to “Re­vi­sed phy­lo­ge­ny of Bacteroidetes and pro­po­sal of six­teen new taxa and two new com­bi­na­ti­ons in­clu­ding Rhodothermaeota phyl. nov” [Syst. Appl. Mi­cro­bi­ol. 39 (7) (2016) 491–492]. Syst. Appl. Mi­cro­bi­ol. 40:190.  [doi:10.1016/j.syapm.2017.03.001] [internal download]
Reintjes, G., C. Arnosti, B.M. Fuchs, and R. Amann. 2017. An al­ter­na­ti­ve po­ly­sac­cha­ri­de uptake me­cha­nism in ma­ri­ne bac­te­ria. ISME J. 11:1640-50. [doi:10.1038/ismej.2017.26] [download pdf]
Panschin, I., M. Becher, S. Verbarg, C. Spröer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R.L. Hahnke. 2017. De­scrip­ti­on of Gramella forsetii sp. nov., a ma­ri­ne Flavobacteriaceae iso­la­ted from North Sea wa­ter, and emen­ded de­scrip­ti­on of Gramella gaetbulicola Cho et al. 2011. Int. J. Syst. Evol. Mi­cro­bi­ol. 67: 697-703. [doi:10.1099/ijsem.0.001700] [internal download]
Meier, D.V., P. Pjevac, W. Bach, S. Hourdez, P.R. Girguis, C. Vidoudez, R. Amann, and A. Meyerdierks. 2017. Ni­che par­ti­tio­n­ing of di­ver­se sul­fur-oxi­di­zing bac­te­ria at hydro­ther­mal vents. ISME J. 11:1545-58. [doi:10.1038/ismej.2017.37] [internal download]
Stagars, M.H., S. Mishra, T. Treude, R. Amann, and K. Knittel. 2017. Mi­cro­bi­al Com­mu­ni­ty Re­s­pon­se to Si­mu­la­ted Pe­tro­le­um See­page in Caspian Sea Se­di­ments. Fron­tiers Mi­cro­bi­ol. 8:764. [doi:10.3389/fmicb.2017.00764] [download pdf]
Avci, B., R.L. Hahnke, M. Chafee, T. Fischer, H. Gruber-Vodicka, H. Tegetmeyer, J. Harder, B.M. Fuchs, R.I. Amann, and H. Teeling. 2017. Ge­no­mic and phy­sio­lo­gi­cal ana­ly­ses of ‘Reinekea forsetii’ re­veal a ver­sa­ti­le op­por­tu­nis­tic life­style du­ring spring al­gae blooms. En­vi­ron. Mi­cro­bi­ol. 19:1209-21. [doi:10.1111/1462-2920.13646] [internal download]
Boedeker, C., M. Schüler, G. Reintjes, O. Jeske, M.C.F. van Teeseling, M. Jogler, P. Rast, D. Borchert, D.P. Devos, M. Kucklick, M. Schaffer, R. Kolter, L. van Niftrik, S. Engelmann, R. Amann, M. Rohde, H. Engelhardt, and C. Jogler. 2017. De­ter­mi­ning the bac­te­ri­al cell bio­lo­gy of Planctomycetes. Nat. Com­mun. 8:14853. [doi:10.1038/ncomms14853] [download pdf]
Hehemann, J.H., L. Van Truong, F. Unfried, N. Welsh, J. Kabisch, S.E. Heiden, S. Junker, D. Becher, A. Thürmer, R. Daniel, R. Amann, and T. Schweder. 2017. Aqua­tic ad­ap­ta­ti­on of a la­te­r­al­ly ac­qui­red pec­tin de­gra­da­ti­on pa­thway in ma­ri­ne ga­ma­pro­te­ob­ac­te­ria. En­vi­ron. Mi­cro­bi­ol. 19:2320-33. [doi:10.1111/1462-2920.13726] [internal download]
Viver, T., L.H. Orellana, J.K. Hatt, M. Urdiain, S. Diaz, M. Richter, J. Anton, M. Avian, R. Amann, K.T. Konstantinidis, and R. Rossello-Mora. 2017. No­vel taxa do­mi­na­te the low di­ver­si­ty mi­cro­bio­me of the jel­ly­fish Cotylorhiza tuberculata. En­vi­ron. Mi­cro­bi­ol. 19:3039-58. [doi:10.1111/1462-2920] [internal download]
Probandt, D., K. Knittel, H. Tegetmeyer, S. Ahmerkamp, M. Holtappels, and R. Amann. 2017. Per­me­a­bi­li­ty shapes bac­te­ri­al com­mu­nities in sub­lit­to­ral sur­face se­di­ments. En­vi­ron. Mi­cro­bi­ol. 19:1584-99.  [doi:10.1111/1462-2920.13676] [internal download]
Konstantinidis, K.T., R. Rosselló-Móra, R. Amann. 2017. Un­cul­ti­va­ted mi­cro­bes in need of their own ta­xo­no­my. ISME J. 11:2399-406. [doi:10.1038/ismej.2017] [internal download]
Barrero-Canosa, J., C. Moraru, L. Zeugner, B.M. Fuchs, and R. Amann. 2017. Di­rect-ge­ne­FISH: a sim­pli­fied pro­to­col for the si­mul­ta­neous de­tec­tion and quan­ti­fi­ca­ti­on of ge­nes and rRNA in mi­cro­or­ga­nisms. En­vi­ron. Mi­cro­bi­ol. 19:70-82. [doi:10.1111/1462-2920.13432] [internal download]

 

2016

Panschin, I., M. Becher, Susanne Verbarg, C. Spöer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R. Hahnke. 2016. De­scrip­ti­on of Gramella forsetii sp.nov., a ma­ri­ne Flavobacteriaceae iso­la­ted from North Sea wa­ter, and emen­ded de­scrip­ti­on of Gra­mel­la gaet­bu­li­co­la Cho et al. 2011. Int. J. Syst. Evol. Mi­cro­bi­ol. 67:697-703. [ncbi page] [internal download]
Barbeyron, T., F. Thomas, V. Barbe, H. Teeling, C. Schenowitz, C. Dossat, A. Goesmann, C. Leblanc, F.O. Glöckner, M. Czjzek, R. Amann, and G. Michel. 2016. Ha­bi­tat und ta­xon as dri­ving forces of car­bo­hy­dra­te ca­t­a­bo­lism in ma­ri­ne he­te­ro­tro­phic bac­te­ria: ex­amp­le of the mo­del al­gae-as­so­cia­ted bac­te­ri­um Zobellia galactanivorans Dsi­jT. En­vi­ron. Mi­cro­bi­ol. 18:4610-27. [ncbi page] [internal download]
Bennke, C.M., K. Krüger, L. Kappelmann, S. Huang, A. Gobet, M. Schüler, V. Barbe, B.M. Fuchs, G. Michel, H. Teeling, and R.I. Amann. 2016. Po­ly­sac­cha­ri­de uti­liza­t­i­on loci of Bacteroidetes from two con­tras­ting open ocea sites in the North At­lan­tic. En­vi­ron. Mi­cro­bi­ol. 18:4456-70. [ncbi page] [internal download]
Meier, D.V., W. Bach, P.R. Girguis, H. Gruber-Vodicka, E.P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks. 2016. He­te­ro­tro­phic Proteobacteria in the vicini­ty of dif­fu­se hydro­ther­mal ven­ting. En­vi­ron. Mi­cro­bi­ol. 18:4348-68. [ncbi page] [internal download]
Pizzetti, I., F. Schulz, T. Tyml, B.M. Fuchs, R. Amann, M. Horn, and S. Fazi. 2016. Chla­my­di­al sea­so­nal dy­na­mics and iso­la­ti­on of ‘Candidatus Nep­tu­noch­la­my­dia ve­xil­li­fe­ra­e’ from a Tyr­rhe­ni­an co­as­tal lake. En­vi­ron. Mi­cro­bi­ol. 18:2405-17. [ncbi page] [internal download]
Amann, R., and R. Rossello-Mora. 2016. Af­ter all, only mil­li­ons? mBio 7:e00999-16. [asm page] [download pdf]
Munoz, R., R. Rossello-Mora, and R. Amann. 2016. Re­vi­sed phy­lo­ge­ny of Bacteroidetes and pro­po­sal of six­teen new taxa and two new com­bi­na­ti­ons in­clu­ding Rhodothermaeota phyl. nov. Syst. Appl. Mi­cro­bi­ol. 39:281-96. [ncbi page] [internal download]
Raupach, M.J., R. Amann, Q.D. Wheeler, and C. Roos. 2016. The ap­p­li­ca­ti­on of “-omics” tech­no­lo­gies for the clas­si­fi­ca­ti­on and iden­ti­fi­ca­ti­on of ani­mals. Org. Di­vers. Evol. 16:1-12. [springer page] [internal download]
Teeling, H., B.M. Fuchs, C.M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Waldmann, C. Quast, F.O. Glöckner, J. Lucas, A. Wichels, G. Gerdts, K.H. Wiltshire, and R.I. Amann. 2016. Re­cur­ring pat­terns in bac­te­rio­plank­ton dy­na­mics du­ring co­as­tal spring al­gae blooms. eLi­fe 5:e11888. [ncbi page] [download pdf]
Stagars, M., E. Ruff, R. Amann, and K. Knittel. 2016. High di­ver­si­ty of an­ae­ro­bic al­ka­ne-de­gra­ding mi­cro­bi­al com­mu­nities in ma­ri­ne seep se­di­ments ba­sed on (1-me­thyl­al­kyl)suc­ci­na­te syn­tha­se ge­nes. Fron­tiers Mi­cro­bi­ol. 6:1511. [ncbi page] [download pdf]

 

2015

Bizic-Ionescu, M., M. Zeder, D. Ionescu, S. Orlic, B.M. Fuchs, H.-P. Grossart, and R. Amann. 2015. Com­par­si­on of bac­te­ri­al com­mu­nities on lim­nic ver­sus co­as­tal ma­ri­ne par­ti­cles re­veals pro­found dif­fe­ren­ces in co­lo­niza­t­i­on. En­vi­ron. Mi­cro­bi­ol. 17:3500-14. [ncbi page] [internal download]
Hahnke, R.L., C.M. Bennke, B.M. Fuchs, A.J. Mann, E. Rhiel, H. Teeling, R. Amann, and J. Harder. 2015. Di­lu­ti­on cul­ti­va­ti­on of ma­ri­ne he­te­ro­tro­phic bac­te­ria ab­un­dant af­ter a spring phy­to­plank­ton bloom in the North Sea. En­vi­ron. Mi­cro­bi­ol. 17:3515-26. [ncbi page] [internal download]
Serrano, W., J. Schruebbers, R. Amann, and U. Fischer. 2015. Allochromatium humboldtianum sp. nov., iso­la­ted from soft co­as­tal se­di­ments. Int. J. Sys­tem. Evol. Mi­cro­bi­ol. 65:2980-85. [ncbi page] [internal download]
Yamaguchi, T., B.M. Fuchs, R. Amann, S. Kawakami, K. Kubota, M. Hatamoto, and T. Yamaguchi. 2015. Ra­pid and sen­si­ti­ve iden­ti­fi­ca­ti­on of ma­ri­ne bac­te­ria by an im­pro­ved in situ DNA hy­bri­di­za­t­i­on chain re­ac­tion (quickHCR-FISH). Syst. Appl. Mi­cro­bi­ol. 38:400-5. [ncbi page] [internal download]
Krupke, A., W. Mohr, J. LaRoche, B.M. Fuchs, R.I. Amann, and M.M. Kuypers. 2015. The ef­fect of nut­ri­ents on car­bon and ni­tro­gen fixa­ti­on by the UCYN-A-hap­to­phy­te sym­bio­sis. ISME J. 9:1635-47. [ncbi page] [internal download]
Schleifer, K.H., R. Amann, and R. Rosselló-Móra. 2015. Ta­xo­no­my in the age of ge­no­mics. Syst. Appl. Mi­cro­bi­ol. 38:207-8. [ncbi page] [internal download]
Rosselló-Móra, R., and R. Amann. 2015. Past and fu­ture spe­cies de­fi­ni­ti­ons for Bac­te­ria and Ar­chaea. Syst. Appl. Mi­cro­bi­ol. 38:209-16. [ncbi page] [internal download]
Xing, P., R.L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbeyron, J. Harder, D. Becher, T. Schweder, F.O. Glöckner, R.I. Amann, and H. Teeling. 2015. Ni­ches of two po­ly­sac­cha­ri­de-de­gra­ding Polaribacter iso­la­tes from the North Sea du­ring a spring dia­tom bloom. ISME J. 9:1410-22. [ncbi page] [internal download]
Korlević, M., P. Pop Ristova, R. Garić, R. Amann,and S. Orlić. 2015. Bac­te­ri­al di­ver­si­ty in the South Adria­tic Sea du­ring a strong, deep win­ter con­vec­tion year. Appl. En­vi­ron. Mi­cro­bi­ol. 81:1715-26. [ncbi page] [download pdf]
Thiele, S., B.M. Fuchs, R. Amann, and M.H. Iversen. 2015. Co­lo­niza­t­i­on in the pho­tic zone and sub­se­quent chan­ges du­ring sin­king de­ter­mi­ne bac­te­ri­al com­mu­ni­ty com­po­si­ti­on in ma­ri­ne snow. Appl. En­vi­ron. Mi­cro­bi­ol. 81:1463-71.[ncbi page] [download pdf]
Pjevac, P., M. Korlević, J. Berg, E. Bura-Nakic, I. Ciglenecki, R. Amann, and S. Orlić. 2015. Com­mu­ni­ty shift from pho­to­tro­phic to che­mo­tro­phic sul­fi­de oxi­da­ti­on fol­lo­wing an­oxic ho­lo­mi­xis in a stra­ti­fied sea­wa­ter lake. Appl. En­vi­ron. Mi­cro­bi­ol. 81:298-308. [ncbi page] [download pdf]

 

2014

Winkel, M., P. Pjevac, M. Kleiner, A. Meyerdierks, S. Littmann, R. Amann, and M. Mußmann. 2014. Iden­ti­fi­ca­ti­on and ac­tivi­ty of ace­ta­te-as­si­mi­la­ting mi­cro­or­ga­nisms in dif­fu­se ven­ting fluids from two hydro­ther­mal sys­tems. FEMS Mi­cro­bi­ol. Ecol. 90:731-6. [ncbi page] [internal download]
Reeves, E.P., M.Y. Yoshinaga, P. Pjevac, N.I. Goldenstein, J. Peplies, A. Meyerdierks, R. Amann, W. Bach, and K.U. Hinrichs. 2014. Mi­cro­bi­al li­pids re­veal car­bon as­si­mi­la­ti­on pat­terns on hydro­ther­mal sul­fi­de chim­neys. En­vi­ron. Mi­cro­bi­ol. 16:3515-32.
[ncbi page] [internal download]
Bizic-Ionescu, M., R. Amann, and H.-P. Grossart. 2014. Mas­si­ve re­gime shifts and high ac­tivi­ty of he­te­ro­tro­phic bac­te­ria in an ice-co­ve­r­ed lake. PLoS ONE. 9:e113611. [ncbi page] [download pdf]
Ruff, E.S., D. Probandt, A.-C. Zinkann, M.H. Iversen, C. Klaas, L. Würzberg, N. Krombholz, D. Wolf-Gladrow, R. Amann, and K. Knittel. 2014. In­di­ca­ti­ons for al­gae-de­gra­ding bent­hic mi­cro­bi­al com­mu­nities in deep-sea se­di­ments along the Ant­arc­tic Po­lar Front. Deep Sea Re­se­arch Part II: To­pi­cal Stu­dies in Ocea­no­gra­phy. 108:6-16. [sciencedirect page] [internal download]
Yarza, P., P. Yilmaz, E. Pruesse, F.O. Glöckner, W. Ludwig, K.-H. Schleifer, W.B. Whitman, J. Euzeby, R. Amann, and R. Rossello-Mora. 2014. Unit­ing the clas­si­fi­ca­ti­on of cul­tu­red and un­cul­tu­red bac­te­ria and ar­chaea using 16S rRNA gene se­quen­ces. Nat. Rev. Mi­cro­bi­ol. 12:635-645. [ncbi page] [internal download]
Kyrpides, N.C., P. Hugenholtz, J.A. Eisen, T. Woyke, M. Göker, C.T. Parker, R. Amann, [56 authors], and H.P. Klenk. 2014. Ge­no­mic en­cy­clo­pe­dia of Bac­te­ria and Ar­chaea: Se­quen­cing a my­riad of type strains. PLoS Bio­lo­gy. 12:e1001920. [ncbi page] [download pdf]
Kleindienst, S., F.-A. Herbst, M. Stagars, F. von Netzer, M. von Bergen, J. Seifert, J. Peplies, R. Amann, F. Musat, T. Lueders, and K. Knittel. 2014. Di­ver­se sul­fa­te-re­du­cing bac­te­ria of the Desulfosarcina/Desulfococcus cla­de are the key al­ka­ne de­gra­ders at ma­ri­ne seeps. ISME J. 8:2029-44. [ncbi page] [internal download]
Krupke, A., G. Lavik, H. Halm, B.M. Fuchs, R.I. Amann, and M.M.M. Kuypers. 2014. The as­so­cia­ti­on bet­ween a unicel­lu­lar al­gae and the N2 fi­xing cya­no­bac­te­ri­um UN­CYN-A in the North At­lan­tic Oce­an. En­vi­ron. Mi­cro­bi­ol. 16:3153-67. [ncbi page] [internal download]
Kabisch, A., A. Otto, S. König, D. Becher, D. Albrecht, M. Schüler, H. Teeling, R. I. Amann, and T. Schweder. 2014. Func­tio­nal cha­rac­te­riza­t­i­on of po­ly­sac­cha­ri­de uti­liza­t­i­on loci in the ma­ri­ne Bacteroidetes ‘Gra­mel­la for­se­ti­i’ KT0803. ISME J. 8:1492-502. [ncbi page] [internal download]
Samant, S., R.I. Amann, and D. Hahn. 2014. Eva­lua­ti­on of the 23S rRNA gene as tar­get for qPCR ba­sed quan­ti­fi­ca­ti­on of Fran­kia in soils. Sys­tem. Appl. Mi­cro­bi­ol. 37:229-234. [ncbi page] [internal download]

 

2013

Mann, A.J., R.L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F.O. Glöckner, R.I. Amann, H. Teeling. 2013. The ge­no­me of the alga-as­so­cia­ted ma­ri­ne flav­o­bac­te­ri­um Formosa agariphila KMM 3901T re­veals a broad po­ten­ti­al for de­gra­da­ti­on of al­gal po­ly­sac­cha­ri­des. Appl. En­vi­ron. Mi­cro­bi­ol. 79:6813-6822. [ncbi page] [download pdf]
Bennke, C.M., T.R. Neu, B.M. Fuchs, and R. Amann. 2013. Map­ping gly­co­con­ju­ga­te-me­dia­ted in­ter­ac­tions of ma­ri­ne Bac­te­ro­ide­tes with dia­toms. Sys­tem. Appl. Mi­cro­bi­ol. 36:417-425. [ncbi page] [internal download]
Ruff, S.E., J. Arnds, K. Knittel, R. Amann, G. Wegener, A. Ramette, and A. Boetius. 2013. Mi­cro­bi­al com­mu­nities of deep-sea me­tha­ne seeps at Hi­kur­an­gi con­ti­nen­tal mar­gin (New Ze­a­land). PLOS One. 8:e72627. [ncbi page] [download pdf]
Allers, E., C. Moraru, M.B. Duhaime, E. Beneze, N. Solonenko, J. Barrero Canosa, R. Amann, and M.B. Sullivan. 2013. Sin­gle-cell and po­pu­la­ti­on le­vel vi­ral in­fec­tion dy­na­mics re­vea­led by pha­ge­FISH, a me­thod to vi­sua­li­ze in­tra­cel­lu­lar and free vi­ru­s­es. En­vi­ron. Mi­cro­bi­ol. 15:2306-2318. [ncbi page] [internal download]
Krupke, A., N. Musat, J. LaRoche, W. Mohr, B.M. Fuchs, R.I. Amann, M.M.M. Kuypers, and R.A. Foster. 2013. In situ iden­ti­fi­ca­ti­on and N2 and C fixa­ti­on of un­cul­ti­va­ted cya­no­bac­te­ri­al po­pu­la­ti­ons. Sys­tem. Appl. Mi­cro­bi­ol. 36:259-271. [ncbi page] [internal download]
Wöhlbrand, L., J.H. Jacob, M. Kube, M. Mussmann, R. Jarling, A. Beck, R. Amann, H. Wilkes, R. Reinhardt, and R. Rabus. 2013. Com­ple­te ge­no­me, ca­t­a­bo­lic sub-pro­teo­mes and key-me­ta­bo­li­tes of Desulfobacula toluolica Tol2, a ma­ri­ne, aro­ma­tic com­pound-de­gra­ding, sul­fa­te-re­du­cing bac­te­ri­um. En­vi­ron. Mi­cro­bi­ol.15:1334-1355. [ncbi page] [internal download]
van de Vossenberg, J., D. Woebken, W.J. Maalcke, H.J.C.T. Wessels, B.E. Dutilh, B. Kartal, E.M. Janssen-Megens, G. Roeselers, J. Yan, D. Speth, J. Gloerich, W. Geerts, E. van der Biezen, W. Pluk, K.-J. Francoijs, L. Russ, P. Lam, S.A. Malfatti, S.G. Tringe, S.C.M. Haaijer, H.J.M. op den Camp, H.G. Stunnenberg, R. Amann, M. Kuypers, and M.S.M. Jetten. 2013. The me­ta­ge­no­me of the ma­ri­ne anam­m­ox bac­te­ri­um Candidatus Scalindua profunda il­lus­tra­tes the ver­sa­ti­li­ty of this glo­bal­ly im­portant ni­tro­gen cy­cle bac­te­ri­um. En­vi­ron. Mi­cro­bi­ol. 15:1275-1289. [ncbi page] [internal download]
Finster, K.W., K.U. Kjeldsen, M. Kube, R. Reinhardt, M. Mussmann, R. Amann, and L. Schreiber. 2013. Com­ple­te ge­no­me se­quence of Desulfocapsa sulfexigens, a ma­ri­ne del­ta­pro­te­ob­ac­te­ri­um spe­cia­li­zed in dis­pro­por­tio­na­ting in­or­ga­nic sul­fur com­pounds. Stan­dards in Ge­no­mic Sci­en­ces. 8:58-68. [sigs page] [download pdf]
Yarza, P., C. Spröer, J. Swiderski, N. Mrotzek, S. Spring, B.J. Tindall, S. Gronow, R. Pukall, H.-P. Klenk, E. Lang, S. Verbarg, A. Crouch, T. Lilburn, B. Beck, C. Unosson, S. Cardew, E.R.B. Moore, M. Gomila, Y. Nakagawa, D. Janssens, P. De Vos, J. Peiren, T. Suttels, D. Clermont, C. Bizet, M. Sakamoto, T. Iida, T. Kudo, Y. Kosako, Y. Oshida, M. Ohkuma, D.R. Arahal, E. Spieck, A. Pommerening Roeser, M. Figge, D. Park, P. Buchanan, A. Cifuentes, R. Munoz, J.P. Euzéby, K.-H. Schleifer, W. Ludwig, R. Amann, F.O. Glöckner, and R. Rosselló-Móra. 2013. Se­quen­cing Or­phan Spe­cies in­itia­ti­ve (SOS): fil­ling the gaps in the 16S rRNA gene se­quence da­ta­ba­se for all spe­cies with va­lid­ly pu­blis­hed na­mes. Sys­tem. Appl. Mi­cro­bi­ol. 36:69-73. [ncbi page] [internal download]

 

2012

Thiele, S., B. Fuchs, N. Ramaiah, and R. Amann. 2012. Mi­cro­bi­al com­mu­ni­ty re­s­pon­se du­ring the iron fer­ti­liza­t­i­on ex­pe­ri­ment LO­HAFEX. Appl. En­vi­ron. Mi­cro­bi­ol. 78:8803-8812. [ncbi page] [download pdf]
Moraru, C., and R. Amann. 2012. Crys­tal ball: fluo­re­scence in situ hy­bri­di­za­t­i­on in the age of su­per-re­so­lu­ti­on mi­cro­sco­py. Sys­tem. Appl. Mi­cro­bi­ol. 35:549-552. [ncbi page] [internal download]
Alonso, C., N. Musat, B. Adam, M. Kuypers and R. Amann. 2012. HISH-SIMS ana­ly­sis of bac­te­ri­al uptake of al­gal-de­ri­ved car­bon in the Rio de la Pla­ta es­tua­ry. Sys­tem. Appl. Mi­cro­bi­ol. 35:541-548. [ncbi page] [internal download]
Arnosti, C., B.M. Fuchs, R. Amann, and U. Passow. 2012. Con­tras­ting ex­tra­cel­lu­lar en­zy­me ac­tivi­ties of par­ti­cle-as­so­cia­ted bac­te­ria from dis­tinct pro­vin­ces of the North At­lan­tic Oce­an. Fron­tiers in Aqua­tic Mi­cro­bio­lo­gy. 425:1-9. [fmicb page] [download pdf]
Lenk, S., C. Moraru, S. Hahnke, J. Arnds, M. Richter, M. Kube, R. Reinhardt, T. Brinkhoff, J. Harder, R. Amann, and M. Mußmann. 2012. Ro­se­ob­ac­ter cla­de bac­te­ria are ab­un­dant in co­as­tal se­di­ments and en­code a no­vel com­bi­na­ti­on of sul­fur oxi­da­ti­on ge­nes. ISME J. 6:2178-2187. [ncbi page] [internal download]
Kleindienst, S., A. Ramette, R. Amann, and K. Knittel. 2012. Dis­tri­bu­ti­on and in situ ab­un­dance of sul­fa­te-re­du­cing bac­te­ria in di­ver­se ma­ri­ne hy­dro­c­ar­bon seep se­di­ments. En­vi­ron. Mi­cro­bi­ol. 14:2689-2710. [ncbi page] [internal download]
Kubo, K., K.G. Lloyd, J. Biddle, R. Amann, A. Teske, and K. Knittel. 2012. Ar­chaea of the Mis­cel­laneous Cren­ar­chaeo­tal Group (MCG) are ab­un­dant, di­ver­se, and wi­de­s­pre­ad in ma­ri­ne en­vi­ron­ments. ISME J. 6:1949-1965. [ncbi page] [internal download]
Pizzetti, I., S. Fazi, B.M. Fuchs, and R. Amann. 2012. High ab­un­dance of no­vel en­vi­ron­men­tal chla­my­diae in a Tyr­rhe­ni­an co­as­tal lake (Lago di Pao­la, Ita­ly). En­vi­ron. Mi­cro­bi­ol. Re­ports. 4:446-452. [wiley online library] [internal download]
Bulgarelli, D., M. Rott, K. Schlaeppi, E.V.L. van Themaat, N. Ahmadinejad, F. Assenza, P. Rauf, B. Huettel, R. Reinhardt, E. Schmelzer, J. Peplies, F.O. Gloeckner, R. Amann, T. Eickhorst, and P. Schulze-Lefert. 2012. Re­vea­ling struc­tu­re and as­sem­bly cues for Ara­bi­d­op­sis root-in­ha­b­it­ing bac­te­ri­al mi­cro­bio­ta. Na­tu­re. 488:91-95. [ncbi page] [internal download]
Sanchez-Andrea, I., K. Knittel, R. Amann, R. Amils, and J.L. Sanz. 2012. Quan­ti­fi­ca­ti­on of Tin­to Ri­ver se­di­ment mi­cro­bi­al com­mu­nities: im­port­an­ce of sul­fa­te-re­du­cing bac­te­ria and their role in at­te­nua­ting acid mine drai­na­ge. Appl. En­vi­ron. Mi­cro­bi­ol. 78:4638-4645. [ncbi page] [download pdf]
Voigt, B., C.X. Hieu, K. Hempel, D. Becher, R. Schlüter, H. Teeling, F.O. Glöckner, R. Amann, M. Hecker, and T. Schweder. 2012. Cell sur­face pro­teo­me of the ma­ri­ne planc­to­my­ce­te Rhodopirellula baltica. Pro­teo­mics. 12:1781-1791. [ncbi page] [internal download]
Teeling, H., B.M. Fuchs, D. Becher, C. Klockow, A. Gardebrecht, C.M. Bennke, M. Kassabgy, S. Huang, A.J. Mann, J. Waldmann, M. Weber, A. Klindworth, A. Otto, J. Lange, J. Bernhardt, C. Reinsch, M. Hecker, J. Peplies, F.D. Bockelmann, U. Callies, G. Gerdts, A. Wichels, K.H. Wiltshire, F.O. Glöckner, T. Schweder, and R. Amann. 2012. Sub­stra­te-con­trol­led suc­ces­si­on of ma­ri­ne bac­te­rio­plank­ton po­pu­la­ti­ons in­du­ced by a phy­to­plank­ton bloom. Sci­ence 336:608-611. [ncbi page] [internal download]
Salman, V., R. Amann, D.A. Shub, and H.N. Schulz-Vogt. 2012. Mul­ti­ple self-spli­cing in­trons in the 16S rRNA ge­nes of gi­ant sul­fur bac­te­ria. Proc. Natl. Acad. Sci. USA 109:4203-4208. [ncbi page] [download pdf]
Gómez-Pereira, P.R., M. Schüler, B.M. Fuchs, C. Bennke, H. Teeling, J. Waldmann, M. Richter, V. Barbe, E. Bataille, F.O. Glöckner, and R. Amann. 2012. Ge­no­mic con­tent of un­cul­tu­red Bac­te­ro­ide­tes from con­tras­ting ocea­nic pro­vin­ces in the North At­lan­tic Oce­an. En­vi­ron. Mi­cro­bi­ol. 14:52-66. [ncbi page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., and  C. Moraru. 2012. Two de­ca­des of fluo­re­scence in situ hy­bri­di­za­t­i­on in sys­te­ma­tic and ap­p­lied mi­cro­bio­lo­gy. Syst. Appl. Mi­cro­bi­ol. 35:483-4. [ncbi page] [internal download]

 

2011

Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.U. Hinrichs, A. Teske, A. Boetius, and G. Wegener. 2011. Ther­mo­phi­lic an­ae­ro­bic oxi­da­ti­on of me­tha­ne by ma­ri­ne mi­cro­bi­al con­sor­tia. ISME J. 5:1946-1956. [ncbi page] [internal download]
Schauer, R., H. Røy, N. Augustin, H.H. Gennerich, M. Peters, F. Wenzhoefer, R. Amann, and A. Meyerdierks. 2011. Bac­te­ri­al sul­fur cy­cling shapes mi­cro­bi­al com­mu­nities in sur­face se­di­ments of an ul­tra­ma­fic hydro­ther­mal vent field. En­vi­ron. Mi­cro­bi­ol. 13:2633-2648. [ncbi page] [internal download]
Petersen, J.M., F.U. Zielinski, T. Pape, R. Seifert, C. Moraru, R. Amann, S. Hourdez, P.R. Girguis, S.D. Wankel, V. Barbe, E. Pelletier, D. Fink, C. Borowski, W. Bach, and N. Dubilier. 2011. Hy­dro­gen is an en­er­gy sour­ce for hydro­ther­mal vent sym­bio­ses. Na­tu­re. 476:176-180. [ncbi page] [internal download]
Serrano, W., R. Amann, R. Rosselló-Móra, R.A. Herbert, and U. Fischer. 2011. The ge­nus Allochromatium (Chro­ma­tia­les Chro­ma­ti­aceae) re­vi­si­ted: A stu­dy on its in­tra­ge­nic struc­tu­re ba­sed on mul­ti­lo­cus se­quence ana­ly­sis (MLSA) and DNA-DNA hy­bri­di­za­t­i­on (DDH). Syst. Appl. Mi­cro­bi­ol. 34: 590-594. [ncbi page] [internal download]
Pizzetti, I., B.M. Fuchs, G. Gerdts, A. Wichels, K.H. Wiltshire, and R. Amann. 2011. Tem­po­ral va­ria­bi­li­ty of co­as­tal Planc­to­my­ce­tes cla­des at Ka­bel­ton­ne sta­ti­on, North Sea. Appl. En­vi­ron. Mi­cro­bi­ol. 77:5009-5017. [ncbi page] [download pdf]
Kubo, K., K. Knittel, R. Amann, M. Fukui, and K. Matsuura. 2011. Sul­fur-me­ta­bo­li­zing bac­te­ri­al po­pu­la­ti­ons in mi­cro­bi­al mats of the Naka­bu­sa hot spring, Ja­pan. Syst. Appl. Mi­cro­bi­ol. 34:293-302. [ncbi page] [internal download]
Salman, V., R. Amann, A.C. Girnth, L. Polerecky, J.V. Bailey, S. Høgslund, G. Jessen, S. Pantoja, and H.N. Schulz-Vogt. 2011. A sin­gle-cell se­quen­cing ap­proach to the clas­si­fi­ca­ti­on of lar­ge, va­cuo­la­ted sul­fur bac­te­ria. Syst. Appl. Mi­cro­bi­ol. 34:243-259. [ncbi page] [internal download]
Suárez-Suárez, A., A. López-López, A. Tovar-Sánchez, P. Yarza, A. Orfila, J. Terrados, J. Arnds, S. Marqués, H. Niemann, P. Schmitt-Kopplin, R. Amann, and R. Rosselló-Móra. 2011. Re­s­pon­se of sul­fa­te-re­du­cing bac­te­ria to an ar­ti­fi­ci­al oil-spill in a co­as­tal ma­ri­ne se­di­ment. En­vi­ron. Mi­cro­bi­ol. 13:1488-1499. [ncbi page] [internal download]
Weber, M., H. Teeling, S. Huang, J. Waldmann, M. Kassabgy, B.M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts, R. Amann, and F.O. Glöckner. 2011. Prac­tical ap­p­li­ca­ti­on of self-or­ga­ni­zing maps to in­ter­re­la­te bio­di­ver­si­ty and func­tio­nal data in NGS-ba­sed me­ta­ge­no­mics. ISME J. 5:918-928. [ncbi page] [internal download]
Munoz, R., P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, and R. Rosselló-Móra. 2011. Re­lease LT­Ps104 of the All-Spe­cies Li­ving Tree. Syst. Appl. Mi­cro­bi­ol. 34:169-170. [ncbi page] [internal download]
Zeder, M., A. Ellrott, and R. Amann. 2011. Au­to­ma­ted samp­le area de­fi­ni­ti­on for high-through­put mi­cro­sco­py. Cy­to­metry A. 79:306-310. [ncbi page] [internal download]
Lenk, S., J. Arnds, K. Zerjatke, N. Musat, R. Amann, and M. Mussmann. 2011. No­vel groups of Gam­ma­pro­te­ob­ac­te­ria ca­ta­ly­se sul­fur oxi­da­ti­on and car­bon fixa­ti­on in a co­as­tal, in­terti­dal se­di­ment. En­vi­ron. Mi­cro­bi­ol. 13:758-774. [ncbi page] [internal download]
Moraru, C., G. Moraru, B.M. Fuchs, and R. Amann. 2011. Con­cepts and soft­ware for a ra­tio­nal de­sign of po­ly­nu­cleo­ti­de pro­bes. En­vi­ron. Mi­cro­bi­ol. Rep. 3:69–78. [wiley online library] [internal download]
Jogler, C., G. Wanner, S. Kolinko, M. Niebler, R. Amann, N. Petersen, M. Kube, R. Reinhardt, and D. Schüler. 2011. Con­ser­va­ti­on of pro­te­ob­ac­te­ri­al ma­gne­to­so­me ge­nes and struc­tu­res in an un­cul­ti­va­ted mem­ber of the deep-bran­ching Ni­tro­s­pi­ra phyl­um. Proc. Natl. Acad. Sci. USA 108:1134-1139. [ncbi page] [download pdf]
Pizzetti, I., A. Gobet, B.M. Fuchs, R. Amann, and S. Fazi. 2011. Ab­un­dance and di­ver­si­ty of Planc­to­my­ce­tes in a Tyr­rhe­ni­an co­as­tal sys­tem of cen­tral Ita­ly. Aquat. Mi­crob. Ecol. 65:129-139. [ame page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, I. Meseguer, M. Lucio, P. Schmitt-Kopplin, J. Dopazo, R. Rossello-Mora, M. Schüler, F. O. Glöckner, R. Amann, T. Gabaldon, and J. Anton. 2011. From ge­no­mics to mi­cro­evo­lu­ti­on and eco­lo­gy: the case of Salinibacter ruber. In: Ha­lo­phi­les and Hy­per­sa­li­ne En­vi­ron­ments, pp.. A. Ven­to­sa, A. Oren, Y. Ma (Eds.) Sprin­ger, Ber­lin, Ger­ma­ny.
Thiele, S., B.M. Fuchs, and R.I. Amann. 2011. Iden­ti­fi­ca­ti­on of Mi­cro­or­ga­nisms Using the Ri­bo­so­mal RNA Ap­proach and Fluo­re­scence In Situ Hy­bri­di­za­t­i­on. In: Trea­ti­se on Wa­ter Sci­ence, vol. 3, pp. 171–189. Pe­ter Wil­de­rer (ed.) Ox­ford: Aca­de­mic Press. [internal download]

 

2010

Yarza, P., W. Ludwig, J. Euzeby, R. Amann, K.-H. Schleifer, F.O. Glöckner, and R. Rossello-Mora. 2010. Up­date of the all-spe­cies Li­ving Tree Pro­ject ba­sed on 16S and 23S rRNA se­quence ana­ly­ses. Sys­tem. Appl. Mi­cro­bi­ol. 33:291-299. [ncbi page] [internal download]
Alonso, C., P. Gomez-Pereira, A. Ramette, L. Ortega, B. M. Fuchs, and R. Amann. 2010. Mul­ti­le­vel ana­ly­sis of the bac­te­ri­al di­ver­si­ty along the en­vi­ron­men­tal gra­di­ent Rio de la Pla­ta-South At­lan­tic Oce­an. Aquat. Mi­crob. Ecol. 61:57-72. [ame page] [internal download]
Schreiber, L., T. Holler, K. Knittel, A. Meyerdierks, and R. Amann. 2010. Iden­ti­fi­ca­ti­on of the do­mi­nant sul­fa­te-re­du­cing bac­te­ri­al part­ner of an­ae­ro­bic me­tha­notro­phs of the ANME-2 cla­de. En­vi­ron. Mi­cro­bi­ol. 12:2327-2340. [ncbi page] [internal download]
Moraru, C., P. Lam, B. Fuchs, M. Kuypers, and R. Amann. 2010. Ge­ne­FISH – an in situ tech­ni­que for lin­king gene pre­sence and cell iden­ti­ty in en­vi­ron­men­tal mi­cro­or­ga­nisms. En­vi­ron. Mi­cro­bi­ol. 12:3057-3073. [ncbi page] [internal download]
Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, C. Dossat, V. Barbe, J. Dopazo, R. Rossello-Mora, M. Schüler, F.O. Glöckner, R. Amann, T. Galbadon, and J. Anton. 2010. Fine-sca­le evo­lu­ti­on: ge­no­mic, phe­no­ty­pic and eco­lo­gi­cal dif­fe­ren­tia­ti­on in two Salinibacter ruber strains si­mul­ta­neous­ly iso­la­ted from the same sal­tern. ISME J. 4:882-895. [ncbi page] [internal download]
Jogler, C., M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A.J. Beck, D. De Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard, and D. Schüler. 2010.Cul­ti­va­ti­on-in­de­pen­dent cha­rac­te­riza­t­i­on of „Candidatus Ma­gne­tobac­te­ri­um ba­va­ri­cum“ via ul­tra­struc­tu­ral, geo­che­mi­cal, eco­lo­gi­cal and me­ta­ge­no­mic me­thods.En­vi­ron. Mi­cro­bi­ol. 12:2466-2478. [ncbi page] [internal download]
Arnds, J., K. Knittel, U. Buck, M. Winkel, and R. Amann. 2010. De­ve­lop­ment of a 16S rRNA-tar­ge­ted pro­be set for Verrucomicrobia and its ap­p­li­ca­ti­on for fluo­re­scence in situ hy­bri­di­za­t­i­on in a hu­mic lake. Sys­tem. Appl. Mi­cro­bi­ol. 33:139-148. [ncbi page] [internal download]
Simonato, F., P.R. Gomez-Pereira, B.M. Fuchs, and R. Amann. 2010. Bac­te­rio­plank­ton di­ver­si­ty and com­mu­ni­ty com­po­si­ti­on in the Sou­thern La­goon of Ve­nice. Sys­tem. Appl. Mi­cro­bi­ol. 33:128-138. [ncbi page] [internal download]
Serrano, W., R. Amann, R. Rossello-Mora, and U. Fischer. 2010. Eva­lua­ti­on of the use of mul­ti­lo­cus se­quence ana­ly­sis (MLSA) to re­sol­ve ta­xo­no­mic con­flicts with the ge­nus Marichromatium. Sys­tem. Appl. Mi­cro­bi­ol. 33:116-121. [ncbi page] [internal download]
Gomez-Pereira, P.R., B.M. Fuchs, C. Alonso, M.J. Oliver, J.E.E. van Beusekom, and R. Amann. 2010. Dis­tinct flav­o­bac­te­ri­al com­mu­nities in con­tras­ting wa­ter mas­ses of the North At­lan­tic Oce­an. ISME J. 4:472-487. [ncbi page] [internal download]
Meyerdierks, A., M. Kube, I. Kostadinov, H. Teeling, F. O. Glöckner, R. Reinhardt, and R. Amann. 2010. Me­ta­ge­no­me and mRNA ex­pres­si­on ana­ly­ses of an­ae­ro­bic me­tha­notro­phic ar­chaea of the ANME-1 group. En­vi­ron. Mi­cro­bi­ol. 12:422-439. [ncbi page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Anton, J., R. Amann, and R. Rossello-Mora. 2010. In Ber­gey­’s Ma­nu­al. Chap­ter 27. Fa­mi­ly 1. Rho­do­ther­maceae. Ge­nus II. Sa­li­ni­bac­ter, p. 146-151.

 

2009

Schattenhofer, M., B. Fuchs, R. Amann, G. Tarran, M. Zubkov, and J. Pernthaler. 2009. La­ti­tu­di­nal dis­tri­bu­ti­on of bac­te­rio­plank­ton po­pu­la­ti­ons in the At­lan­tic Oce­an. En­vi­ron. Mi­cro­bi­ol. 11:2078-2093. [ncbi page] [internal download]
Jogler, C., W. Lin, A. Meyerdierks, M. Kube, E. Katzmann, C. Flies, Y.X. Pan, R. Amann, R. Reinhardt, and D. Schüler. 2009. Toward clo­n­ing of the ma­gne­tot­ac­tic me­ta­ge­no­me: iden­ti­fi­ca­ti­on of ma­gne­to­so­me is­land gene clus­ters in un­cul­ti­va­ted ma­gne­tot­ac­tic bac­te­ria from dif­fe­rent aqua­tic se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 75:3972-3979. [ncbi page] [download pdf]
Buck, U., H.-P. Grossart, R. Amann, and J. Pernthaler. 2009. Sub­stra­te in­cor­po­ra­ti­on pat­terns of bac­te­rio­plank­ton po­pu­la­ti­ons in stra­ti­fied and mi­xed wa­ters of a hu­mic lake. En­vi­ron. Mi­cro­bi­ol. 11:1854-1865. [ncbi page] [internal download]
Lavik, G., T. Stührmann, V. Brüchert, A. van der Plas, V. Mohrholz, P. Lam, M. Mußmann, B. M. Fuchs, R. Amann, U. Lass and & M. M.M. Kuypers. 2009. De­to­xi­fi­ca­ti­on of sulph­idic Af­ri­can shelf wa­ters by bloo­m­ing che­mo­lit­ho­tro­phs. Na­tu­re 457:581-584. [ncbi page] [internal download]
Serrano, W., R. Amann, and U. Fischer. 2009. A mo­dera­te­ly ther­mo­phi­lic and high sulphi­de to­le­rant bio­ty­pe of Ma­rich­ro­ma­ti­um gra­ci­le, iso­la­ted from ti­d­al se­di­ments of the Ger­man Wad­den Sea: Marichromatium gracile bio­ty­pe thermosulphidiphilum. Sys­tem. Appl. Mi­cro­bi­ol. 32:1-7. [ncbi page] [internal download]
Yan, S., B. M. Fuchs, S. Lenk, J. Harder, J. Wulf, N.-Z. Jiao, and R. Amann. 2009. Bio­geo­gra­phy and phy­lo­ge­ny of the NOR5/​OM60 cla­de of Gammaproteobacteria. Sys­tem. Appl. Mi­cro­bi­ol. 32:124-139. [ncbi page] [internal download]
Strittmatter, A.W., H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W.F. Fricke, R. Martinez-Arias, D. Bartels, A. Goesmann, L. Krause, A. Pühler, H.-P. Klenk, M. Richter, M. Schüler, F.O. Glöckner, A. Meyerdierks, G. Gottschalk, and R. Amann. 2009. Ge­no­me se­quence of Desulfobacterium autotrophicum HRM2, a ma­ri­ne sul­fa­te re­du­cer oxi­di­zing or­ga­nic car­bon com­ple­te­ly to car­bon di­oxi­de. En­vi­ron. Mi­cro­bi­ol. 11:1038-1055. [ncbi page] [internal download]
Lam, P., G. Lavik, M.M. Jensen, J. van de Vossenberg, M. Schmid, D. Woebken, D. Guiterrez, R. Amann, M.S.M. Jetten, and M.M.M. Kuypers. 2009. Re­vi­sing the ni­tro­gen cy­cle in the Pe­ru­vi­an oxy­gen mi­ni­mum zone. Proc. Natl. Acad. Sci. USA 106:4752-4747. [ncbi page] [download pdf]

 

2008

Amann, R., and B. Fuchs. 2008. Sin­gle-cell iden­ti­fi­ca­ti­on in mi­cro­bi­al com­mu­nities by im­pro­ved fluo­re­scence in situ hy­bri­di­za­t­i­on tech­ni­ques. Na­tu­re Rev. Mi­cro­bi­ol. 6:339-348. [ncbi page] [internal download]
Hieu, C. X., B. Vogt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker, and T. Schweder. 2008. De­tai­led pro­teo­me ana­ly­sis of gro­wing cells of the planc­to­my­ce­te Rho­do­pi­rel­lu­la bal­ti­ca SH1T. Pro­teo­mics 8:1608-1623. [ncbi page] [internal download]
Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs, and R. Amann. 2008. A mi­cro­di­ver­si­ty stu­dy of anam­m­ox bac­te­ria re­veals a no­vel Can­di­da­tus Scal­in­dua phy­lo­ty­pe in ma­ri­ne oxy­gen mi­ni­mum zo­nes. En­vi­ron. Mi­cro­bi­ol. 10:3106-3119. [ncbi page] [internal download]
Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K.-H. Schleifer, W. Ludwig, F. O. Glöckner, R. Rossello-Mora. 2008. The all-spe­cies li­ving tree pro­ject: A 16S rRNA-ba­sed phy­lo­ge­ne­tic tree of all se­quen­ced type strains. Sys­tem. Appl. Mi­cro­bi­ol. 31:241-250. [ncbi page] [internal download]
Barberyon, T., F. Carpentier, S. L’Haridon, M. Schüler, G. Michel, and R. Amann. 2008. De­scrip­ti­on of Ma­ri­bac­ter for­se­tii sp. nov., a ma­ri­ne Flav­o­bac­te­ri­aceae iso­la­ted from North Sea wa­ter, and emen­ded de­scrip­ti­on of the ge­nus Ma­ri­bac­ter. Int. J. Sys­tem. Evol. Mi­cro­bi­ol. 58:790-797. [ncbi page] [internal download]
Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillon, F. Horreard, R. Amann, B.B. Jorgensen, and M.M.M. Kuypers. 2008.A sin­gle-cell view on the eco­phy­sio­lo­gy of an­ae­ro­bic pho­to­tro­phic bac­te­ria. Proc. Natl. Acad. Sci. USA 105:17861-17866. [ncbi page] [download pdf]

 

2007

Wakeham, S. G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jorgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damste, H. M. Talbot, and D. Woebken. 2007. Mi­cro­bi­al eco­lo­gy of the stra­ti­fied wa­ter co­lumn of the Black Sea as re­vea­led by a com­pre­hen­si­ve bio­mar­ker stu­dy. Or­ga­nic Geo­che­mis­try. 38:2070-2097. [sciencedirect page] [internal download]
Prast, M., A. Bischoff, U. Waller, R. Amann, und U.-G. Berninger. 2007. Im­pact of ci­lia­tes on ni­tri­fi­ca­ti­on and ni­tri­fy­ing bac­te­ria in Bal­tic Sea se­di­ments. Ma­ri­ne Ecol. Pro­gress Ser. 350:55-61. [meps page] [internal download]
Mussmann, M., F. Z. Hu, M. Richter, D. de Beer, A. Preisler, B. B. Jorgensen, M. Huntemann, F. O. Glöckner, R. Amann, W. J. H. Koopman, R. S. Lasken, B. Janto, J. Hogg, P. Stoodley, R. Boissy, and G. D. Ehrlich. 2007. In­sights into the ge­no­mes of lar­ge sul­fur bac­te­ria re­vea­led by ana­ly­sis of sin­gle fil­aments. PLoS Bio­lo­gy 5:1923-1937 (e230). [ncbi page] [download pdf]
Woebken, D., H. Teeling, P. Wecker, A. Dumitriu, I. Kostadinov, E. F. DeLong, R. Amann, and F. O. Glöckner. 2007. Fos­mids of no­vel ma­ri­ne planc­to­my­ce­tes from the Na­mi­bi­an and Ore­gon co­ast up­wel­ling sys­tems and their cross-com­pa­ri­son with planc­to­my­ce­te ge­no­mes. ISME J. 1:419-435. [ncbi page] [internal download]
Woebken, D., B. M. Fuchs, M. M. M. Kuypers, and R. Amann. 2007. Po­ten­ti­al in­ter­ac­tions of par­ti­cle-as­so­cia­ted anam­m­ox bac­te­ria with bac­te­ri­al and ar­chae­al part­ners in the Na­mi­bi­an up­wel­ling sys­tem. Appl. En­vi­ron. Mi­cro­bi­ol. 73:4648-4657. [ncbi page] [download pdf]
Lösekann, T., K. Knittel, T. Nadalig, B. Fuchs, H. Niemann, A. Boetius, and R. Amann. 2007. Di­ver­si­ty and ab­un­dance of anero­bic and an­ae­ro­bic me­tha­ne oxi­di­zers at the Haa­kon Mos­by mud vol­ca­no, Ba­rents Sea. Appl. En­vi­ron. Mi­cro­bi­ol. 73:3348-3362. [ncbi page] [download pdf]
Santos, F., A. Meyerdierks, A. Pena, R. Rossello-Mora, R. Amann, and P. Anton. 2007. Me­ta­ge­no­mic ap­proach to the stu­dy of ha­lo­pha­ges: the en­vi­ron­men­tal ha­lo­pha­ge 1 (EHP-1). En­vi­ron. Mi­cro­bi­ol. 9:1711-1723. [ncbi page] [internal download]
Soria-Carrasco, V., M. Valens-Vadell, A. Pena, J. Anton, R. Amann, J. Castresana, and R. Rossello-Mora. 2007. Phy­lo­ge­ne­tic po­si­ti­on of Salinibacter ruber ba­sed on con­ca­te­n­a­ted pro­te­in ali­gn­ments. Syst. Appl. Mi­cro­bi­ol. 30:171-179. [ncbi page] [internal download]
Fuchs, B. M., S. Spring, H. Teeling, C. Quast, J. Wulf, M. Schattenhofer, S. Yan, S. Ferriera, J. Johnson, F. O. Glöckner, and R. Amann. 2007. Cha­rac­te­riza­t­i­on of a ma­ri­ne gam­ma­pro­te­ob­ac­te­ri­um ca­pa­ble of ae­ro­bic an­oxy­ge­nic pho­to­syn­the­sis. Proc. Natl. Acad. Sci. USA 104:2891-2896. [ncbi page] [download pdf]
Alonso, C., F. Warnecke, R. Amann, and J. Pernthaler. 2007. High lo­cal and glo­bal di­ver­si­ty of Flav­o­bac­te­ria in ma­ri­ne plank­ton. En­vi­ron. Mi­cro­bi­ol. 9:1253-1266. [ncbi page] [internal download]
Musat, N., O. Giere, F. Thiermann, R. Amann, and N. Dubilier. 2007 Mole­cu­lar and mor­pho­lo­gi­cal cha­rac­te­riza­t­i­on of the sym­bio­sis bet­ween bac­te­ri­al en­do­sym­bi­onts and the ne­ma­to­de Astomonema sp. from the Ba­ha­mas. En­vi­ron. Mi­cro­bi­ol. 9:1345-1353. [ncbi page] [internal download]
Lam, P., M.M. Jensen, G. Lavik, D.F. McGinnis, B. Müller, C.J. Schubert, R. Amann, B. Thamdrup, and M.M.M. Kuypers. 2007. Lin­king cren­ar­chae­al and bac­te­ri­al ni­tri­fi­ca­ti­on to ANAM­M­OX in the Black Sea. Proc. Natl. Acad. Sci. USA 104:7104-7109. [ncbi page] [download pdf]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Fuchs, B. M., J. Pernthaler, and R. Amann. 2007. Sin­gle cell iden­ti­fi­ca­ti­on by fluo­re­scence in situ hy­bri­di­za­t­i­on, pp. 886-896. In: Me­thods for Ge­ne­ral and Mole­cu­lar Mi­cro­bio­lo­gy, 3rd Edi­ti­on. C.A. Red­dy, T. J. Be­ve­ridge, J.A. Brez­nak, G. Marz­luf, T. M. Schmidt, and L. R. Sny­der, Eds. ASM Press, Wa­shing­ton D.C. [internal download]

 

2006

Musat, N., U. Werner, K. Knittel, S. Kolb, T. Dodenhof, J. E. E. van Beusekom, D. De Beer, N. Dubilier, and R. Amann. 2006. Mi­cro­bi­al com­mu­ni­ty struc­tu­re of san­dy in­terti­dal se­di­ments in the North Sea, Sylt-Romo Ba­sin, Wad­den Sea. Syst. Appl. Mi­cro­bi­ol. 29:333-348. [ncbi page] [internal download]
MacGregor, B. J., H.T.S. Boschker, and R. Amann. 2006. Com­pa­ri­son of rRNA and po­lar-li­pid-de­ri­ved fat­ty acid bio­mar­kers for as­ses­sing 13C-sub­stra­te in­cor­po­ra­ti­on by mi­cro­or­ga­nisms in ma­ri­ne se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 72:5246-5253. [ncbi page] [download pdf]
Blazejak, A., J. Kuever, C. Erseus, R. Amann, and N. Dubilier. 2006. Phy­lo­ge­ny of 16S rRNA, ri­bu­lo­se 1,5-bis­phos­pha­te car­boxy­la­se/​oxy­ge­na­se, and ade­no­si­ne 5’-phos­pho­sul­fa­te re­duc­ta­se ge­nes from gam­ma- and al­pha­pro­te­ob­ac­te­ri­al sym­bi­onts in gut­less ma­ri­ne worms (Oli­gochae­ta) from Ber­mu­da and the Ba­ha­mas. Appl. En­vi­ron. Mi­cro­bi­ol. 72:5527-5536. [ncbi page] [download pdf]
MacGregor, B. J., and R. Amann. 2006. Sin­gle-stran­ded con­for­ma­tio­nal po­ly­mor­phism for se­pa­ra­ti­on of mi­xed rR­N­As (rRNA-SSCP), a new me­thod for pro­filing mi­cro­bi­al com­mu­nities. Syst. Appl. Mi­cro­bi­ol. 29:661-670. [ncbi page] [internal download]
Niemann, H., T. Lösekann, D. de Beer, M. Elvert, T. Nadalig, K. Knittel, R. Amann, E.J. Sauter, M. Schlüter, M. Klages, J. Foucher, and A. Boetius. 2006. No­vel mi­cro­bi­al com­mu­nities of the Haa­kon Mos­by mud vul­ca­no and their role as a me­tha­ne sink. Na­tu­re (Lon­don) 443:854-858. [ncbi page] [internal download]
Woyke, T., H. Teeling, N.N. Ivanova, M. Huntemann, M. Richter, F.O. Glöckner, D. Boffelli, I.J. Anderson, K.W. Barry, H.J. Shapiro, E. Szeto, N.C. Kyrpides, M. Mussmann, R. Amann, C. Bergin, C. Ruehland, E.M. Rubin, and N. Dubilier. 2006. Sym­bio­sis in­sights through me­ta­ge­no­mic ana­ly­sis of a mi­cro­bi­al con­sor­ti­um. Na­tu­re (Lon­don) 443:950-956. [ncbi page] [internal download]
Bauer, M., M. Kube, H. Teeling, M. Richter, T. Lombardot, E. Allers, C.A. Würdemann, C. Quast, H. Kuhl, F. Knaust, D. Woebken, K. Bischof, M. Mussmann, J.V. Choudhuri, F. Meyer, R. Reinhardt, R.I. Amann, and F.O. Glöckner. 2006. Who­le ge­no­me ana­ly­sis of the ma­ri­ne Bacteroidetes “Gramella forsetii” re­veals ad­ap­ta­ti­ons to de­gra­da­ti­on of po­ly­me­ric or­ga­nic mat­ter. En­vi­ron. Mi­cro­bi­ol. 8:2201-2213. [ncbi page] [internal download]
Mary, I., J.L. Heywood, B.M. Fuchs, R. Amann, G.A. Tarran, P.H. Burkill, and M.V. Zubkov. 2006. SAR11 do­mi­nan­ce among me­ta­bo­li­cal­ly ac­tive low nu­cleic acid bac­te­rio­plank­ton in sur­face wa­ters along an At­lan­tic me­r­idio­nal tran­sect. Aquat. Mi­crob. Ecol. 45:107-113. [ame page] [internal download]
Tujula, N. A., C. Holmström, M. Mußmann, R. Amann, S. Kjelleberg, and G. R. Crocetti. 2006. A CARD-FISH pro­to­col for the iden­ti­fi­ca­ti­on and en­u­me­ra­ti­on of epi­phytic bac­te­ria on ma­ri­ne al­gae. J. Mi­cro­bi­ol. Meth. 65:604-607. [ncbi page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., J. Peplies, and D. Schüler. 2006. Di­ver­si­ty and ta­xo­no­my of ma­gne­tot­ac­tic bac­te­ria. In: Ma­gne­to­re­cep­ti­on and Ma­gne­to­so­mes in Bac­te­ria, pp. 25-36. D. Schü­ler (Ed.). Sprin­ger-Ver­lag Ber­lin Hei­del­berg. [internal download]
Cypionka, H., H.-D. Babenzien, F. O. Glöckner, and R. Amann. 2006. The ge­nus Nevskia. In: The Pro­ka­ryo­tes. Third Edi­ti­on. Vo­lu­me 6: Pro­te­ob­ac­te­ria: Gam­ma Sub­class, pp. 1152-1155. M. Dwor­kin, S. Fal­kow, E. Ro­sen­berg, K. H. Schlei­fer and E. Sta­cke­brandt (Eds.). Sprin­ger Sci­en­ces+Busi­ness Me­dia, LLC. [internal download]

 

2005

Knittel, K., T. Lösekann, A. Boetius, R. Kort, and R. Amann. 2005. Di­ver­si­ty and dis­tri­bu­ti­on of me­tha­notro­phic ar­chaea at cold seeps. Appl. En­vi­ron. Mi­cro­bi­ol. 71:467-479. [ncbi page] [download pdf]
Kämpfer, P., R. Schulze, U. Jäckel, K. A. Malik, R. Amann, and S. Spring. 2005. Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., iso­la­ted from ac­tiva­ted sludge. Int. J. Syst. Evol. Mi­cro­bi­ol. 55:341-344. [ijsem page] [internal download]
Blazejak, A., C. Erseus, R. Amann, and N. Dubilier. 2005. Co­exis­tence of bac­te­ri­al sul­fi­de oxi­di­zers, sul­fa­te re­du­cers, and spi­ro­che­tes in a gut­less worm (Oli­gochae­ta) from the Peru Mar­gin. Appl. En­vi­ron. Mi­cro­bi­ol. 71:1553-1561. [ncbi page] [download pdf]
Knittel, K., J. Kuever, A. Meyerdierks, R. Meinke, R. Amann, and T. Brinkhoff. 2005. Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psy­chro­phi­lic, ob­li­ga­te­ly che­mo­li­tho­au­to­tro­phic, sul­fur-oxi­di­zing bac­te­ria iso­la­ted from ma­ri­ne Arc­tic se­di­ments. Int. J. Syst. Evol. Mi­cro­bi­ol. 55:781-786. [ijsem page] [internal download]
Mussmann, M., K. Ishii, R. Rabus, and R. Amann. 2005. Di­ver­si­ty and ver­ti­cal dis­tri­bu­ti­on of cul­tu­red and un­cul­tu­red Deltaproteobacteria in an in­terti­dal mud flat of the Wad­den Sea. En­vi­ron. Mi­cro­bi­ol. 7:405-418. [ncbi page] [internal download]
Lombardot, T., M. Bauer, H. Teeling, R. Amann, and F.-O. Glöckner. 2005. The tran­scrip­tio­nal re­gu­la­tor pool of the ma­ri­ne bac­te­ri­um Rhodopirellula sp. strain SH 1T as re­vea­led by who­le ge­no­me com­pa­ri­sons. FEMS Mi­cro­bi­ol. Lett. 242:137-145. [ncbi page] [internal download]
Duperon, S., T. Nadalig, J.-C. Caprais, M. Sibuet, A. Fiala-Medioni, R. Amann, and N. Dubilier. 2005. Dual sym­bio­sis in a Bathymodiolus mus­sel from a me­tha­ne seep on the Ga­bon con­ti­nen­tal mar­gin (Sou­theast At­lan­tic): 16S rRNA phy­lo­ge­ny and dis­tri­bu­ti­on of the sym­bi­onts in gills. Appl. En­vi­ron. Mi­cro­bi­ol. 71:1694-1700. [ncbi page] [download pdf]
Kuypers, M.M.M., G. Lavik, D. Woebken, M. Schmid, B. M. Fuchs, R. Amann, B. B. Jorgensen, and M. S. M. Jetten. 2005. Mas­si­ve ni­tro­gen loss from the Ben­gue­la up­wel­ling sys­tem through an­ae­ro­bic am­mo­ni­um oxi­da­ti­on. Proc. Natl. Acad. Sci. USA 102:6478-6483. [ncbi page] [download pdf]
Kumar, Y., R. Westram, S. Behrens, B. Fuchs, F. O. Glöckner, R. Amann, H. Meier, and W. Ludwig. 2005. Gra­phi­cal re­pre­sen­ta­ti­on of ri­bo­so­mal RNA pro­be ac­ces­si­bi­li­ty data using ARB soft­ware pa­cka­ge. BMC Bio­in­for­ma­tics 6:61 (doi:10.1186/​1471-2105-6-61). [ncbi page] [download pdf]
Fuchs, B. M., D. Wöbken, M. V. Zubkov, P. Burkill, and R. Amann. 2005. Mole­cu­lar iden­ti­fi­ca­ti­on of pi­co­plank­ton po­pu­la­ti­ons in con­tras­ting wa­ters of the Ara­bi­an Sea. Aqua­tic Mi­crob. Ecol. 39:145-157. [ame page] [internal download]
Kube, M., A. Beck, A. Meyerdierks, R. Amann, R. Reinhardt, and R. Rabus. 2005. A ca­t­a­bo­lic gene clus­ter for an­ae­ro­bic ben­zoa­te de­gra­da­ti­on in me­tha­notro­phic mi­cro­bi­al Black Sea mats. Syst. Appl. Mi­cro­bi­ol. 28:287-294. [ncbi page] [internal download]
Pena, A., M. Valens, F. Santos, S. Buczolits, J. Anton, P. Kämpfer, H.-J. Busse, R. Amann, and R. Rossello-Mora. 2005. In­tras­pe­ci­fic com­pa­ra­ti­ve ana­ly­sis of the spe­cies Salinibacter ruber. Ex­tremo­phi­les 9:151-161. [ncbi page] [internal download]
Gieseke, A., J.L. Nielsen, R. Amann, P.H. Nielsen, and D. DeBeer. 2005. In situ sub­stra­te con­ver­si­on and as­si­mi­la­ti­on by ni­tri­fy­ing bac­te­ria in a mo­del bio­film. En­vi­ron. Mi­cro­bi­ol. 7:1392-1404. [ncbi page] [internal download]
Pernthaler, J., and R. Amann. 2005. Fate of he­te­ro­tro­phic mi­cro­bes in pel­agic ha­bi­tats: fo­cus on po­pu­la­ti­ons. Mi­cro­bi­ol. Mol. Biol. Rev. 69:440-461. [ncbi page] [download pdf]
Gade, D., D. Theiss, D. Lange, E. Mirgorodskaya, T. Lombardot, F. O. Glöckner, M. Kube, R. Reinhardt, R. Amann, H. Lehrach, R. Rabus, and J. Gobom. 2005. Towards the pro­teo­me of the ma­ri­ne bac­te­ri­um Rhodopirellula baltica: map­ping the solub­le pro­te­ins. Pro­teo­mics 5:3654-3671. [ncbi page] [internal download]
Mußmann, M., M. Richter, T. Lombardot, A. Meyerdierks, J. Kuever, M. Kube, F. O. Glöckner, and R. Amann. 2005. Clus­te­red ge­nes re­la­ted to sul­fa­te re­spi­ra­ti­on in un­cul­tu­red pro­ka­ryo­tes sup­port the theo­ry of their con­co­mitant ho­ri­zon­tal trans­fer. J. Bac­te­ri­ol. 187:7126–7137. [ncbi page] [download pdf]
Meyerdierks, A., M. Kube, T. Lombardot, K. Knittel, M. Bauer, F. O. Glöckner, R. Reinhardt, and R. Amann. 2005. In­sights into the ge­no­mes of ar­chaea me­dia­ting the an­ae­ro­bic oxi­da­ti­on of me­tha­ne. En­vi­ron. Mi­cro­bi­ol. 7:1937-1951. [ncbi page] [internal download]
Beardsley, C., K. Knittel, R. Amann, and J. Pernthaler. 2005. Quan­ti­fi­ca­ti­on and dis­tinc­tion of aplas­ti­dic and plas­ti­dic ma­ri­ne na­no­plank­ton by fluo­re­scence in situ hy­bri­di­za­t­i­on. Aquat. Mi­crob. Ecol. 41:163-169. [ame page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Anton, J., A. Pena, M. Valens, F. Santos, F. O. Glöckner, M. Bauer, J. Dopazo, J. Herrero, R. Rossello-Mora, and R. Amann. 2005. Salinibacter ruber: ge­no­mics and bio­geo­gra­phy. In: Ad­ap­ta­ti­ons to Life at High Salt Con­cen­tra­ti­ons, p. 257-266. N. Gun­de-Ci­mer­man, A. Oren, A. Ple­me­ni­tas (Eds.). Klu­wer Aca­de­mic Pu­blis­hers BV, Dor­drecht. [internal download]

2004

Gade, D., H. Schlesner, F. O. Glöckner, R. Amann, S. Pfeiffer, and M. Thomm. 2004. Iden­ti­fi­ca­ti­on of Planc­to­my­ce­tes with or­der-, ge­nus- and strain-spe­ci­fic 16S rRNA-tar­ge­ted pro­bes. Mi­crob. Ecol. 47:243-251. [ncbi page] [internal download]
Warnecke, F., R. Amann, and J. Pernthaler. 2004. Ac­tino­bac­te­ri­al 16S rRNA ge­nes from freshwa­ter ha­bi­tats clus­ter in four dis­tinct li­na­ges. En­vi­ron. Mi­cro­bi­ol. 6:242-253. [ncbi page] [internal download]
Zubkov, M., L. J. Linn, R. Amann, and R. P. Kiene. 2004. Tem­po­ral pat­terns of bio­lo­gi­cal di­me­thyl­sul­fi­de (DMS) con­sump­ti­on du­ring la­bo­ra­to­ry-in­du­ced phy­to­plank­ton bloom cy­cles. Mar. Ecol. Prog. Ser. 271:77-86. [meps page] [internal download]
Peplies, J., S. C. K. Lau, J. Pernthaler, R. Amann, and F. O. Glöckner. 2004. Ap­p­li­ca­ti­on and va­li­da­ti­on of DNA mi­cro­ar­rays for the 16S rRNA-ba­sed ana­ly­sis of ma­ri­ne bac­te­rio­plank­ton. En­vi­ron. Mi­cro­bi­ol. 6:638-645. [ncbi page] [internal download]
Heuchert, A., F. O. Glöckner, R. Amann, and U. Fischer. 2004. Psychrobacter nivimaris sp. nov., a he­te­ro­tro­phic bac­te­ri­um at­ta­ched to or­ga­nic par­ti­cles iso­la­ted from the South At­lan­tic (Ant­arc­tica). Syst. Appl. Mi­cro­bi­ol. 27:399-406. [ncbi page] [internal download]
Altmann, D., P. Stief, R. Amann, and D. De Beer. 2004. Dis­tri­bu­ti­on and ac­tivi­ty of ni­tri­fy­ing bac­te­ria in na­tu­ral stream se­di­ment ver­sus la­bo­ra­to­ry se­di­ment mi­cro­cosms. Aquat. Mi­crob. Ecol. 36:73-81. [ame page] [internal download]
Altmann, D., P. Stief, R. Amann, and D. de Beer. 2004. Ni­tri­fi­ca­ti­on in freshwa­ter se­di­ments as in­flu­en­ced by in­sect lar­vae:quan­ti­fi­ca­ti­on by mi­cro­sen­sors and fluo­re­scence in situ hy­bri­di­za­t­i­on. Mi­crob. Ecol. 48:145-153. [ncbi page] [internal download]
Brinkmeyer, R., F.-O. Glöckner, E. Helmke, and R. Amann. 2004. Pre­do­mi­nan­ce of beta­pro­te­ob­ac­te­ria in sum­mer melt pools on Arc­tic pack ice. Lim­nol. Ocea­no­gr. 49:1013-1021. [lo page] [download pdf]
Rabus, R., A. Ruepp, T. Frickey, T. Rattei, B. Fartmann, M. Stark, M. Bauer, A. Zibat, T. Lombardot, I. Becker, J. Amann, K. Gellner, H. Teeling, W. D. Leuschner, F.-O, Glöckner, A. N. Lupas, R. Amann, and H.-P. Klenk. 2004. The ge­no­me of a sulp­ha­te­re­du­cing bac­te­ri­um from per­man­ent­ly cold Arc­tic se­di­ments: Desulfotalea psychrophila. En­vi­ron. Mi­cro­bi­ol. 6:887-902. [ncbi page] [internal download]
Teeling, H., A. Meyerdierks, M. Bauer, R. Amann, and F. O. Glöckner. 2004. Ap­p­li­ca­ti­on of te­tra­nu­cleo­ti­de fre­quen­cies for the as­si­gn­ment of ge­no­mic frag­ments. En­vi­ron. Mi­cro­bi­ol. 6:938-947. [ncbi page] [internal download]
Pernthaler, A., and R. Amann. 2004. Si­mul­ta­neous fluo­re­scence in situ hy­bri­di­za­t­i­on of mRNA and rRNA in en­vi­ron­men­tal bac­te­ria. Appl. En­vi­ron. Mi­cro­bi­ol. 70:5426-5433. [ncbi page] [download pdf]
Behrens, S., B. M. Fuchs, and R. Amann. 2004. The ef­fect of nu­cle­o­ba­se-spe­ci­fic fluo­re­scence quen­ching on in situ hy­bri­di­za­t­i­on with rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Syst. Appl. Mi­cro­bi­ol. 27:565-572. [ncbi page] [internal download]
Peplies, J., F. O. Glöckner, R. Amann, and W. Ludwig. 2004. Com­pa­ra­ti­ve se­quence ana­ly­sis and oli­go­nu­cleo­ti­de pro­be de­sign ba­sed on 23S rRNA ge­nes of Alphaproteobacteria from North Sea bac­te­rio­plank­ton. Syst. Appl. Mi­cro­bi­ol. 27:573-580. [ncbi page] [internal download]
Sekar, R., B. M. Fuchs, R. Amann, and J. Pernthaler. 2004. Flow sor­ting of ma­ri­ne bac­te­rio­plank­ton af­ter fluo­re­scence in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 70:6210-6219. [ncbi page] [download pdf]
Ishii, K., M. Mussmann, B. J. MacGregor, and R. Amann. 2004. An im­pro­ved fluo­re­scence in situ hy­bri­di­za­t­i­on pro­to­col for the iden­ti­fi­ca­ti­on of bac­te­ria and ar­chaea in ma­ri­ne se­di­ments. FEMS Mi­cro­bi­ol. Ecol. 50:203-212. [ncbi page] [internal download]
Bauer, M., T. Lombardot, H. Teeling, N. L. Ward, R. I. Amann, and F. O. Glöckner. 2004. Ar­chaea-like ge­nes for C1-trans­fer en­zy­mes in Planc­to­my­ce­tes: phy­lo­ge­ne­tic im­pli­ca­ti­ons of their un­ex­pec­ted pre­sence in this phyl­um. J. Mol. Evol. 59:571-586. [ncbi page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., R. Rossello-Mora, C. Flies, and D. Schüler. 2004. Phy­lo­ge­ny and in situ iden­ti­fi­ca­ti­on of ma­gne­tot­ac­tic bac­te­ria, p. 45-60. In: Bio­mi­ne­ra­li­sa­ti­on (2. Edi­ti­on), E. Bäu­er­lein (Ed.), Wi­ley-VCH, Wein­heim, Ger­ma­ny. [internal download]
Pernthaler, A., J. Pernthaler, and R. Amann. 2004. Sen­si­ti­ve mul­ti-co­lor in situ hy­bri­di­za­t­i­on for the iden­ti­fi­ca­ti­on of en­vi­ron­men­tal mi­cro­or­ga­nisms. In: Mole­cu­lar Mi­cro­bi­al Eco­lo­gy Ma­nu­al, Se­cond Edi­ti­on, 3.11, pp. 711-726. Ko­wal­chuk, G. et al. (Eds.). Klu­wer Aca­de­mic Pu­blis­hers, Dor­drecht, The Nether­lands. [internal download]
Oren, A., F. Rodriguez-Valera, J. Anton, S. Benlloch, R. Rossello-Mora, R. Amann, J. Coleman, and N. J. Russell. 2004. Red, ex­tre­me­ly ha­lo­phi­lic, but not ar­chae­al: the phy­sio­lo­gy and eco­lo­gy of Salinibacter ruber, a bac­te­ri­um iso­la­ted from sal­tern crys­tal­li­zer ponds. In: Ha­lo­phi­lic mi­cro­or­ga­nisms, pp. 63-76. A. Ven­to­sa. (Ed.). Sprin­ger-Ver­lag, Ber­lin Hei­del­berg. [internal download]

 

2003

Zubkov, M. V., B. M. Fuchs, G. A. Tarran, P. H. Burkill, and R. Amann. 2003. High rate of uptake of or­ga­nic ni­tro­gen com­pounds by Prochlorococcus cya­no­bac­te­ria as a key to their do­mi­nan­ce in oli­go­tro­phic ocea­nic wa­ters. Appl. En­vi­ron. Mi­cro­bi­ol. 69:1299-1304. [ncbi page] [download pdf]
Gieseke, A., L. Bjerrum, M. Wagner, and R. Amann. 2003. Struc­tu­re and ac­tivi­ty of mul­ti­ple ni­tri­fy­ing bac­te­ri­al po­pu­la­ti­ons co-exis­ting in a bio­film. En­vi­ron. Mi­cro­bi­ol. 5:355-369. [ncbi page] [internal download]
Behrens, S., C. Rühland, J. Inacio, H. Huber, A. Fonseca, I. Spencer-Martins, B. M. Fuchs, and R. Amann. 2003. In situ ac­ces­si­bi­li­ty of small-sub­u­nit rRNA of mem­bers of the do­mains Bacteria, Archaea, and Eucarya to Cy3-la­be­led oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 69:1748-1758. [ncbi page] [download pdf]
Peplies, J., F. O. Glöckner, and R. Amann. 2003. Op­ti­miza­t­i­on stra­te­gies for the DNA mi­cro­ar­ray-ba­sed de­tec­tion of bac­te­ria with 16S rRNA-tar­ge­ting oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 69:1397-1407. [ncbi page] [download pdf]
Mußmann, M., H. N. Schulz, B. Strotmann, T. Kjaer, L. P. Nielsen, R. A. Rossello-Mora, R. I. Amann, and Bo B. Jorgensen. 2003. Phy­lo­ge­ny and dis­tri­bu­ti­on of ni­tra­te-sto­ring Beggiatoa spp. in co­as­tal ma­ri­ne se­di­ments. En­vi­ron. Mi­cro­bi­ol. 5:523-533. [ncbi page] [internal download]
Beardsley, C., J. Pernthaler, W. Wosniok, and R. Amann. 2003. Are rea­di­ly cul­tura­ble bac­te­ria in co­as­tal North Sea wa­te­res sup­pres­sed by selec­tive gra­zing mor­ta­li­ty? Appl. En­vi­ron. Mi­cro­bi­ol. 69:2624-2630. [ncbi page] [download pdf]
Pernthaler, J., A. Pernthaler, and R. Amann. 2003. Au­to­ma­ted en­u­me­ra­ti­on of groups of ma­ri­ne pi­co­plank­ton af­ter fluo­re­scence in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 69:2631-2637. [ncbi page] [download pdf]
Inacio, J., S. Behrens, B. M. Fuchs, A. Fonseca, I. Spencer-Martins, and R. Amann. 2003. In situ ac­ces­si­bi­li­ty of Saccharomyces cerevisiae 26S rRNA to Cy3-la­be­led oli­go­nu­cleo­ti­de pro­bes com­pri­sing the D1 and D2 do­mains. Appl. En­vi­ron. Mi­cro­bi­ol. 69:2899-2905. [ncbi page] [download pdf]
Sekar, R., A. Pernthaler, J. Pernthaler, F. Warnecke, T. Posch, und R. Amann. 2003. An im­pro­ved pro­to­col for quan­ti­fi­ca­ti­on of freshwa­ter Actinobacteria by fluo­re­scence in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 69:2928-2935. [ncbi page] [download pdf]
Glöckner, F.O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, R. Rabus, H. Schlesner, R. Amann, and R. Reinhardt. 2003. Com­ple­te ge­no­me se­quence of the ma­ri­ne planc­to­my­ce­te Pirellula sp. strain 1. Proc. Natl. Acad. Sci. USA 100:8298-8303. [ncbi page] [download pdf]
Neretin, L. N., A. Schippers, A. Pernthaler, K. Hamann, R. Amann, and B. B. Jorgensen. 2003. Quan­ti­fi­ca­ti­on of dis­si­mi­la­to­ry (bi)sulp­hi­te re­duc­ta­se gene ex­pres­si­on in Desulfobacterium autotrophicum using real-time RT-PCR. En­vi­ron. Mi­cro­bi­ol. 5:660-671. [ncbi page] [internal download]
Gonzalez-Toril, E., E. Llobet-Brossa, E. O. Casamayor, R. Amann, and R. Amils. 2003. Mi­cro­bi­al eco­lo­gy of an ex­tre­me aci­dic en­vi­ron­ment, the Tin­to ri­ver. Appl. En­vi­ron. Mi­cro­bi­ol. 69:4853-4865. [ncbi page] [download pdf]
Behrens, S., B. M. Fuchs, F. Müller, and R. Amann. 2003. Is the in situ ac­ces­si­bi­li­ty of the 16S rRNA of Escherichia coli for Cy3-la­be­led oli­go­nu­cleo­ti­de pro­bes pre­dic­ted by a three­di­men­sio­nal struc­tu­re mo­del of the 30S ri­bo­so­mal sub­u­nit? Appl. En­vi­ron. Mi­cro­bi­ol. 69:4935-4941. [ncbi page] [download pdf]
Knittel, K., A. Boetius, A. Lemke, H. Eilers, K. Lochte, O. Pfannkuche, P. Linke, and R. Amann. 2003. Ac­tivi­ty, dis­tri­bu­ti­on, and di­ver­si­ty of sul­fa­te re­du­cers and other bac­te­ria in se­di­ments above gas hy­dra­te (Cas­ca­dia Mar­gin, Ore­gon). Geo­mi­cro­bi­ol. J. 20:269-294. [tandfonline page] [internal download]
Brinkmeyer, R., K. Knittel, J. Jürgens, H. Weyland, R. Amann, and E. Helmke. 2003. Di­ver­si­ty and struc­tu­re of bac­te­ri­al com­mu­nities in Arc­tic ver­sus Ant­arc­tic Pack Ice. Appl. En­vi­ron. Mi­cro­bi­ol. 69:6610-6619. [ncbi page] [download pdf]
Altmann, D., P. Stief, R. Amann, D. de Beer, and A. Schramm. 2003. In situ dis­tri­bu­ti­on and ac­tivi­ty of ni­tri­fy­ing bac­te­ria in freshwa­ter se­di­ment. En­vi­ron. Mi­cro­bi­ol. 5:798-803. [ncbi page] [internal download]
Krüger, M., A. Meyerdierks, F. O. Glöckner, R. Amann, F. Widdel, M. Kube, R. Reinhardt, J. Kahnt, R. Böcher, R. K. Thauer, and S. Shima. 2003. A con­spi­cuous ni­ckel pro­te­in in mi­cro­bi­al mats that oxi­di­ze me­tha­ne an­ae­ro­bi­cal­ly. Na­tu­re (Lon­don) 426:878-881. [ncbi page] [internal download]

 

2002

Gieseke, A., P. Arnz, R. Amann, and A. Schramm. 2002. Si­mul­ta­neous P and N re­mo­val in a se­quen­cing batch bio­film re­ac­tor: in­sights from re­ac­tor and mi­cro­s­ca­le in­ves­ti­ga­ti­ons. Wat. Res. 36:501-509. [ncbi page] [internal download]
Pernthaler, A., C. M. Preston, J. Pernthaler, E. F. DeLong, and R. Amann. 2002. Com­pa­ri­son of fluo­re­scent­ly la­be­led oli­go­nu­cleo­ti­de and po­ly­nu­cleo­ti­de pro­bes for the de­tec­tion of pel­agic ma­ri­ne bac­te­ria and ar­chaea. Appl. En­vi­ron. Mi­cro­bi­ol. 68:661-667. [ncbi page] [download pdf]
Anton, J., A. Oren, S. Benlloch, F. Rodriguez-Valera, R. Amann, and R. Rossello-Mora. 2002. Salinibacter ruber gen. nov., sp. nov., a no­vel, ex­tre­me­ly ha­lo­phi­lic mem­ber of the Bacteria from sal­tern crys­tal­li­zer ponds. Int. J. Syst. Evol. Mi­cro­bi­ol. 52:485-491. [ncbi page] [internal download]
Casamayor, E. O., C. Pedros-Alio, G. Muyzer, and R. Amann. 2002. Mi­cro­he­te­ro­gen­ei­ty in 16S ri­bo­so­mal DNA-de­fi­ned bac­te­ri­al po­pu­la­ti­ons from a stra­ti­fied plank­to­nic en­vi­ron­ment is re­la­ted to tem­po­ral chan­ges and to eco­lo­gi­cal ad­ap­ta­ti­ons. Appl. En­vi­ron. Mi­cro­bi­ol. 68:1706-1714. [ncbi page] [download pdf]
Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann, and P. H. Burkill. 2002. Ra­pid tur­no­ver of dis­sol­ved DMS and DMSP by de­fi­ned bac­te­rio­plank­ton com­mu­nities in the stra­ti­fied eu­pho­tic zone of the North Sea. Deep-Sea Re­se­arch II. 49:3017-3038. [sciencedirect page] [internal download]
Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluo­re­scence in situ hy­bri­di­za­t­i­on and ca­ta­ly­zed re­por­ter de­po­si­ti­on for the iden­ti­fi­ca­ti­on of ma­ri­ne bac­te­ria. Appl. En­vi­ron. Mi­cro­bi­ol. 68:3094-3101. [ncbi page] [download pdf]
R. Rabus, D. Gade, R. Helbig, M. Bauer, F. O. Glöckner, M. Kube, H. Schlesner, R. Reinhardt, and R. Amann. 2002. Ana­ly­sis of N-ace­tylg­lu­co­sa­mi­ne me­ta­bo­lism in the ma­ri­ne bac­te­ri­um Pirellula sp. strain 1 by a pro­teo­mic ap­proach. Pro­teo­mics 2:649-655. [ncbi page] [internal download]
Abed, R. M. M., W. Schönhuber, R. Amann, and F. Garcia-Pichel. 2002. Pi­co­bent­hic cya­no­bac­te­ri­al po­pu­la­ti­ons re­vea­led by 16S rRNA-tar­ge­ted in situ hy­bri­di­za­t­i­on. En­vi­ron. Mi­cro­bi­ol. 4:375-382. [ncbi page] [internal download]
Michaelis, W., R. Seifert, K. Nauhaus, T. Treude, V. Thiel, M. Blumenberg, K. Knittel, A. Gieseke, K. Peterknecht, T. Pape, A. Boetius, R. Amann, B. B. Joergensen, F. Widdel, J. Peckmann, N. V. Pimenov, and M. B. Gulin. 2002. Mi­cro­bi­al reefs in the Black Sea fu­el­led by an­ae­ro­bic oxi­da­ti­on of me­tha­ne. Sci­ence 297:1013-1015. [ncbi page] [internal download]
MacGregor, B. J., V. Brüchert, S. Fleischer, and R. Amann. 2002. Iso­la­ti­on of small­sub­u­nit rRNA for sta­ble iso­to­pic cha­rac­te­riza­t­i­on. En­vi­ron. Mi­cro­bi­ol. 4:451-464. [ncbi page] [internal download]
Llobet-Brossa, E., R. Rabus, M. E. Böttcher, M. Könneke, N. Finke, A. Schramm, R. L. Meyer, S. Grötzschel, R. Rossello-Mora, and R. Amann. 2002. Com­mu­ni­ty struc­tu­re and ac­tivi­ty of sul­fa­te-re­du­cing bac­te­ria in an in­terti­dal sur­face-se­di­ment: a mul­ti-me­thods ap­proach. Aqua­tic Mi­crob. Ecol. 29:211-226. [ame page] [internal download]
Zubkov, M. V., B. M. Fuchs, G. A. Tarran, P. H. Burkill, and R. Amann. 2002. Me­so­s­ca­le dis­tri­bu­ti­on of do­mi­nant bac­te­rio­plank­ton groups in the nort­hern North Sea in ear­ly sum­mer. Aquat. Mi­crob. Ecol. 29:135-144. [ame page] [internal download]
Pernthaler, A., J. Pernthaler, M. Schattenhofer, and R. Amann. 2002. Iden­ti­fi­ca­ti­on of DNA-syn­the­si­zing bac­te­ri­al cells in co­as­tal North Sea plank­ton. Appl. En­vi­ron. Mi­cro­bi­ol. 68:5728-5736. [ncbi page] [download pdf]
Borowski, C., O. Giere, J. Krieger, R. Amann, und N. Dubilier. 2002. New as­pects of the sym­bio­sis in the pro­van­nid snail Ifremeria nautilei from the North Fiji Back Arc Ba­sin. Cah. Biol. Mar. 43:321-324. [cbm page] [download pdf]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Knittel, K., T. Losekann, A. Boetius, T. Nadalig, and R. Amann. 2002. Di­ver­si­ty of mi­cro­or­ga­nisms me­dia­ting an­ae­ro­bic oxi­da­ti­on of me­tha­ne. In: Geochi­mi­ca Et Cos­mochi­mi­ca Acta. 66(15A):A407.
Amann, R. 2002.Think big: the in­ter­na­tio­nal di­men­si­on of en­vi­ron­men­tal mi­cro­bio­lo­gy. En­vi­ron. Mi­cro­bi­ol. 4:3. [ncbi page]
Amann, R. 2002. Mo­le­ku­la­re Po­pu­la­ti­ons­ana­ly­se von Mi­kro­or­ga­nis­men. Rund­ge­sprä­che der Kom­mis­si­on für Öko­lo­gie, Bd. 23 “Be­deu­tung der Mi­kro­or­ga­nis­men für die Um­welt”, P. 31-40, Ver­lag Dr. Fried­rich Pfeil, Mün­chen. [internal download]
MacGregor, B. J., K. Ravenschlag, and R. Amann. 2002. Nu­cleic acid-ba­sed tech­ni­ques for ana­ly­zing the di­ver­si­ty, stru­cut­re, and func­tion of mi­cro­bi­al com­mu­nities in ma­ri­ne wa­ters and se­di­ments. In: Mi­cro­bi­al sys­tems in se­di­men­ta­ry en­vi­ron­ments of con­ti­nen­tal mar­gins, pp. 419-438. G. We­fer et al. Eds. Sprin­ger-Ver­lag, Ber­lin. [internal download]
Boetius, A., B. B. Jorgensen, R. Amann, J. P. Henriet, K. U. Hinrichs, K. Lochte, B. J. MacGregor, G. Voordouw. 2002. Mi­cro­bi­al sys­tems in se­di­men­ta­ry en­vi­ron­ments of con­ti­nen­tal mar­gins. In: Mi­cro­bi­al sys­tems in se­di­men­ta­ry en­vi­ron­ments of con­ti­nen­tal mar­gins, pp. 479-495. G. We­fer et al. Eds. Sprin­ger-Ver­lag, Ber­lin. [internal download]

 

2001

Ravenschlag, K., K. Sahm, and R. Amann. 2001. Quan­ti­ta­ti­ve mole­cu­lar ana­ly­sis of the mi­cro­bi­al com­mu­ni­ty in ma­ri­ne Arc­tic se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 67:387-395. [ncbi page] [download pdf]
Schweitzer, B., I. Huber, R. Amann, W. Ludwig, and M. Simon. 2001. Al­pha- and beta­pro­te­ob­ac­te­ria con­trol the con­sump­ti­on and re­lease of ami­no acids on lake snow ag­gre­ga­tes. Appl. En­vi­ron. Mi­cro­bi­ol. 67:632-637. [ncbi page] [download pdf]
Fuchs, B. M., K. Syutsubo, W. Ludwig, and R. Amann. 2001. In situ ac­ces­si­bi­li­ty of Escherichia coli 23S rRNA to fluo­re­scent­ly la­be­led oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 67:961-968. [ncbi page] [download pdf]
Rossello-Mora, R., and R. Amann. 2001. The spe­cies con­cept for pro­ka­ryo­tes. FEMS Mi­cro­bi­ol. Rev. 25:39-67. [ncbi page] [internal download]
Gieseke, A., U. Purkhold, M. Wagner, R. Amann, and A. Schramm. 2001. Com­mu­ni­ty struc­tu­re and ac­tivi­ty dy­na­mics of ni­tri­fy­ing bac­te­ria in a phos­pha­te-re­mo­ving bio­film. Appl. En­vi­ron. Mi­cro­bi­ol. 67:1351-1362. [ncbi page] [download pdf]
Nogales, B., E. R. B. Moore, E. Llobet-Brossa, R. Rossello-Mora, R. Amann, and K. N. Timmis. 2001. Com­bi­ned use of 16S ri­bo­so­mal DNA and 16S rRNA to stu­dy the bac­te­ri­al com­mu­ni­ty of po­ly­chlo­ri­na­ted bi­phe­nyl-pol­lu­ted soil. Appl. En­vi­ron. Mi­cro­bi­ol. 67:1874-1884. [ncbi page] [download pdf]
Pernthaler, J., T. Posch, K. Simek, J. Vrba, A. Pernthaler, F. O. Glöckner, U. Nübel, R. Psenner, and R. Amann. 2001. Pre­da­tor-spe­ci­fic en­rich­ment of Ac­tino­bac­te­ria from a cos­mo­po­li­tan freshwa­ter cla­de in mi­xed con­ti­nuous cul­tu­re. Appl. En­vi­ron. Mi­cro­bi­ol. 67:2145-2155. [ncbi page] [download pdf]
Dubilier, N., C. Mülders, T. Ferdelman, D. De Beer, A. Pernthaler, M. Klein, M. Wagner, C. Erseus, F. Thiermann, J. Krieger, O. Giere, and R. Amann. 2001. En­do­sym­bio­tic sulp­hat-re­du­cing and sulphi­de-oxi­di­zing bac­te­ria in an oli­gochae­te worm. Na­tu­re (Lon­don) 411:298-302. [ncbi page] [internal download]
Simek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Chan­ges in bac­te­ri­al com­mu­ni­ty com­po­si­ti­on and dy­na­mics and vi­ral mor­ta­li­ty ra­tes as­so­cia­ted with en­han­ced fla­gel­la­te gra­zing in a me­soeu­tro­phic re­ser­voir. Appl. En­vi­ron. Mi­cro­bi­ol. 67:2723-2733. [ncbi page] [download pdf]
Amann, R., B. M. Fuchs, and S. Behrens. 2001. The iden­ti­fi­ca­ti­on of mi­cro­or­ga­nisms by fluo­re­scence in situ hy­bri­di­sa­ti­on. Curr. Opin. Bio­tech. 12:231-236. [ncbi page] [internal download]
Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann, and P. H. Burkill. 2001. Lin­king the com­po­si­ti­on of bac­te­rio­plank­ton to ra­pid tur­no­ver of dis­sol­ved di­me­thyl­sulp­ho­nio­pro­pio­na­te in an al­gal bloom in the North Sea. En­vi­ron. Mi­cro­bi­ol. 3:304-311. [ncbi page] [internal download]
West, N. J., W. A. Schönhuber, N. J. Fuller, R. I. Amann, R. Rippka, A. F. Post, and D. J. Scanlan. 2001.Clo­se­ly re­la­ted Prochlorococcus ge­no­ty­pes show re­mar­ka­b­ly dif­fe­rent depth dis­tri­bu­ti­ons in two ocea­nic re­gi­ons as re­vea­led by in situ hy­bri­di­sa­ti­on using 16S rR­NA­tar­ge­ted oli­go­nu­cleo­ti­des. Mi­cro­bi­ol. 147:1731-1744. [ncbi page] [internal download]
Pernthaler A., J. Pernthaler, H. Eilers, and R. Amann. 2001. Growth pat­terns of two ma­ri­ne iso­la­tes: ad­ap­ta­ti­ons to sub­stra­te patchi­ness? Appl. En­vi­ron. Mi­cro­bi­ol. 67:4077-4083. [ncbi page] [download pdf]
Schönhuber, W., G. Le Bourhis, J. Tremblay, R. Amann, and S. Kulakauskas. 2001. Uti­liza­t­i­on of tm RNA se­quen­ces for bac­te­ri­al iden­ti­fi­ca­ti­on. BMC Mi­cro­bio­lo­gy 1:20. [ncbi page] [download pdf]
Eilers, H., J. Pernthaler, J. Peplies, F. O. Glöckner, G. Gerdts, and R. Amann. 2001. Iso­la­ti­on of no­vel pel­agic bac­te­ria from the Ger­man Bight and their sea­so­nal cont­ri­bu­ti­ons to sur­face pi­co­plank­ton. Appl. En­vi­ron. Mi­cro­bi­ol. 67:5134-5142. [ncbi page] [download pdf]
Zubkov, M. V., B. M. Fuchs, P. H. Burkill, and R. Amann. 2001. Com­pa­ri­son of cel­lu­lar and bio­mass spe­ci­fic ac­tivi­ties of do­mi­nant bac­te­rio­plank­ton groups in stra­ti­fied wa­ters of the Cel­tic Sea. Appl. En­vi­ron. Mi­cro­bi­ol. 67:5210-5218. [ncbi page] [download pdf]
Kirchman, D. L., L. Yu, B. M. Fuchs, and R. Amann. 2001. Struc­tu­re of bac­te­ri­al com­mu­nities in aqua­tic sys­tems as re­vea­led by fil­ter PCR. Aquat. Mi­crob. Ecol. 26:13-22. [ame page] [internal download]
Pernthaler, J., F. O. Glöckner, W. Schönhuber, and R. Amann. 2001. Fluo­re­scence in situ hy­bri­di­za­t­i­on with rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes, p. 207-226. In: Me­thods in Mi­cro­bio­lo­gy (Vol. 30): Ma­ri­ne Mi­cro­bio­lo­gy, J. Paul (Ed.) Aca­de­mic Press, San Die­go, USA. [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R, and R. Rossello-Mora. 2001. Mi­kro­bio­lo­gi­sche As­pek­te der Bio­di­ver­si­tät, p. 161-180. In: Bio­di­ver­si­tät: Wis­sen­schaft­li­che Grund­la­gen und ge­sell­schaft­li­che Re­le­vanz, P. Ja­nich, M. Gut­mann und K. Prieß (Ed.). Sprin­ger-Ver­lag, Ber­lin, Ger­ma­ny. [internal download]
Amann, R., and K. H. Schleifer. 2001. Nu­cleic acid pro­bes and their ap­p­li­ca­ti­on in en­vi­ron­men­tal mi­cro­bio­lo­gy, p. 67-82. In: Ber­gey­’s Ma­nu­al of Sys­te­ma­tic Bac­te­rio­lo­gy, 2. Edi­ti­on, Vol. 1, D. R. Boo­ne and R. W. Cas­ten­holz (eds.), Sprin­ger-Ver­lag, New York, USA. [internal download]

 

2000

Böttcher, M. E., B. Hespenheide, E. Llobet-Brossa, C. Beardsley, O. Larsen, A. Schramm, A. Wieland, G. Böttcher, U.-G. Berninger, and R. Amann. 2000. The bio­geo­che­mis­try, sta­ble iso­to­pe geo­che­mis­try, and mi­cro­bi­al com­mu­ni­ty struc­tu­re of a tem­pe­ra­te in­terti­dal mud­flat: An in­te­gra­ted stu­dy. Cont. Shelf Res. 20:1749-1769. [sciencedirect page] [internal download]
Amann, R. 2000. Who is out the­re? Mi­cro­bi­al as­pects of bio­di­ver­si­ty. Syst. Appl. Mi­cro­bi­ol. 23:1-8. [ncbi page] [internal download]
Groben, R., G. J. Doucette, M. Kopp, M. Kodama, R. Amann, and L. K. Medlin. 2000. 16S rRNA tar­ge­ted pro­bes for the iden­ti­fi­ca­ti­on of bac­te­ri­al strains iso­la­ted from cul­tu­res of the to­xic di­n­of­la­gel­la­te Alexandrium tamarense. Mi­cro­bi­ol. Ecol. 39:186-196. [ncbi page] [internal download]
Weller, R., F. O. Glöckner, and R. Amann. 2000. 16S rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes for the in situ de­tec­tion of mem­bers of the phyl­um Cytophaga-Flavobacterium-Bacteroides. Syst. Appl. Mi­cro­bi­ol. 23:107-114. [ncbi page] [internal download]
Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill and R. Amann. 2000. Chan­ges in com­mu­ni­ty com­po­si­ti­on du­ring di­lu­ti­on cul­tu­res of ma­ri­ne bac­te­rio­plank­ton as as­ses­sed by flow cy­to­metric and mole­cu­lar bio­lo­gi­cal tech­ni­ques. En­vi­ron. Mi­cro­bi­ol. 2:191-201. [ncbi page] [internal download]
Oerther, D. B., J. Pernthaler, A. Schramm, R. Amann, and L. Raskin. 2000. Mo­ni­to­ring pre­cur­sor 16S rR­N­As of Acinetobacter spp. in ac­tiva­ted sludge was­te­wa­ter tre­at­ment sys­tems. Appl. En­vi­ron. Mi­cro­bi­ol. 66:2154-2165. [ncbi page] [download pdf]
Thamdrup, B., R. Rossello-Mora, and R. Amann. 2000. Mi­cro­bi­al man­ga­ne­se and sul­fa­te re­duc­tion in Black Sea shelf se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 66:2888-2897. [ncbi page] [download pdf]
Eilers, H., J. Pernthaler, F. O. Glöckner, and R. Amann. 2000. Cul­tura­bi­li­ty and in situ ab­un­dance of pel­agic bac­te­ria from the North Sea. Appl. En­vi­ron. Mi­cro­bi­ol. 66:3044-3051. [ncbi page] [download pdf]
Anton, J., R. Rossello-Mora, F. Rodriguez-Valera, and R. Amann. 2000. Ex­tre­me­ly ha­lo­phi­lic Bacteria in crys­tal­li­zer ponds from so­lar sal­terns. Appl. En­vi­ron. Mi­cro­bi­ol. 66:3052-3057. [ncbi page] [download pdf]
Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jorgensen, and R. Amann. 2000. Com­mu­ni­ty struc­tu­re, cel­lu­lar rRNA con­tent, and ac­tivi­ty of sul­fa­te-re­du­cing bac­te­ria in ma­ri­ne Arc­tic se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 66:3592-3602. [ncbi page] [download pdf]
Fuchs, B. M., F. O. Glöckner, and R. Amann. 2000. Un­la­be­led hel­per oli­go­nu­cleo­ti­des in­crea­se the in situ ac­ces­si­bi­li­ty of 16S rRNA for fluo­re­scent­ly la­be­led oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 66:3603-3607. [ncbi page] [download pdf]
Amann, R., and W. Ludwig. 2000. Ri­bo­so­mal RNA-tar­ge­ted nu­cleic acid pro­bes for stu­dies in mi­cro­bi­al eco­lo­gy. FEMS Mi­cro­bi­ol. Rev. 24:555-565. [ncbi page] [internal download]
Boetius, A., K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B.B. Jorgensen, U. Witte, O. Pfannkuche. 2000. Mi­cro­sco­pic iden­ti­fi­ca­ti­on of a mi­cro­bi­al con­sor­ti­um ap­pa­r­ent­ly me­dia­ting an­ae­ro­bic me­tha­ne oxi­da­ti­on above ma­ri­ne gas hy­dra­tes. Na­tu­re (Lon­don) 407:623-626. [ncbi page] [internal download]
H. Eilers, J. Pernthaler, and R. Amann. 2000. Suc­ces­si­on of pel­agic ma­ri­ne bac­te­ria du­ring en­rich­ment: a clo­se look at cul­ti­va­ti­on-in­du­ced shifts. Appl. En­vi­ron. Mi­cro­bi­ol. 66:4634-4640. [ncbi page] [download pdf]
Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann. 2000. Com­pa­ra­ti­ve 16S rRNA ana­ly­sis of lake bac­te­rio­plank­ton re­veals glo­bal­ly dis­tri­bu­ted phy­lo­ge­ne­tic clus­ters in­clu­ding an ab­un­dant group of ac­tino­bac­te­ria. Appl. En­vi­ron. Mi­cro­bi­ol. 66:5053-5065. [ncbi page] [download pdf]
Jurgens, G., F. O. Glöckner, R. Amann, A. Saano, L. Montonen, M. Likolammi, and U. Münster. 2000. Iden­ti­fi­ca­ti­on of no­vel Ar­chaea in bac­te­rio­plank­ton of a bo­re­al fo­rest lake by phy­lo­ge­ne­tic ana­ly­sis and fluo­re­scent in situ hy­bri­di­za­t­i­on. FEMS Mi­cro­bi­ol. Ecol. 34:45-56. [ncbi page] [internal download]
Schramm, A., D. DeBeer, A. Gieseke, and R. Amann. 2000. Mi­cro­en­vi­ron­ments and dis­tri­bu­ti­on of ni­tri­fy­ing bac­te­ria in a mem­bra­ne-bound bio­film. En­vi­ron. Mi­cro­bi­ol. 2:680-686. [ncbi page] [internal download]
Amann, G., K. O. Stetter, E. Llobet-Brossa, R. Amann, and J. Anton. 2000. Di­rect pro­of for the pre­sence and ex­pres­si­on of two 5% dif­fe­rent 16S rRNA ge­nes in in­di­vi­du­al cells of Haloarcula marismortui. Ex­tremo­phi­les 4:373-376. [ncbi page] [internal download]
Ravelhofer-Rotheneder, K., H. Engelhardt, O. Wolf, R. Amann, W. Breuer, und J. Kösters. 2000. Ta­xo­no­mi­sche Klas­si­fi­zie­rung von „Me­ga­bak­te­ri­en“-Iso­la­ten aus Wel­len­sit­ti­chen (Melopsittacus undulatus Shaw, 1805). Tier­ärztl. Prax. 28(K):415-420.

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R.. 2000. Me­tho­den zur Be­stim­mung der in situ-Funk­ti­on von Mi­kro­or­ga­nis­men. BIO­spek­trum 6:274-276. [biospektrum page] [download pdf]
Amann, R.. 2000. Me­tho­do­lo­gi­cal As­pects of fluo­re­scence in situ hy­bri­di­za­t­i­on. Bio­sci­ence Mi­crof­lo­ra 19:85-91. [bm page] [download pdf]
Brand, B. C., R. I. Amann, M. Steinert, D. Grimm, and J. Hacker. 2000. Iden­ti­fi­ca­ti­on and in situ de­tec­tion of in­tra­cel­lu­lar bac­te­ria in the en­vi­ron­ment, p. 601-624. In: Sub­cel­lu­lar Bio­che­mis­try, Vo­lu­me 33: Bac­te­ri­al in­va­si­on into eu­ka­ryo­tic cells, T. A. Oel­schla­e­ger and J. Ha­cker (Eds.). Klu­wer Aca­de­mic/​Ple­num Pu­blis­hers, New York, USA. [ncbi page] [internal download]
Amann, R., R. Rossello-Mora, and D. Schüler. 2000. Phy­lo­ge­ny and in situ iden­ti­fi­ca­ti­on of ma­gne­tot­ac­tic bac­te­ria, p. 47-60. In: Bio­mi­ne­ra­li­sa­ti­on, E. Bäu­er­lein (Ed.), Wi­ley-VCH, Wein­heim, Ger­ma­ny. [internal download]

 

1999

Jürgens, K., J. Pernthaler, S. Schalla, and R. Amann. 1999. Mor­pho­lo­gi­cal and com­po­si­tio­nal chan­ges in a plank­to­nic bac­te­ri­al com­mu­ni­ty in re­s­pon­se to en­han­ced pro­to­zo­an gra­zing. Appl. En­vi­ron. Mi­cro­bi­ol. 65:1241-1250. [ncbi page] [download pdf]
Schönhuber, W., B. Zarda, S. Eix, R. Rippka, M. Herdman, W. Ludwig, and R. Amann. 1999. In situ iden­ti­fi­ca­ti­on of cya­no­bac­te­ria with hor­sera­dish per­oxi­da­se-la­be­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 65:1259-1267. [ncbi page] [download pdf]
Juretschko, S., W. Schönhuber, S. Kulakauskas, D. S. Ehrlich, K.-H. Schleifer, and R. Amann. 1999. In situ de­tec­tion of Escherichia coli cells con­tai­ning ColE1-re­la­ted plas­mids by hy­bri­di­za­t­i­on to re­gu­la­to­ry RNA II. Syst. Appl. Mi­cro­bi­ol. 22:1-8. [ncbi page] [internal download]
Glöckner, F. O., H.-D. Babenzien, J. Wulf, and R. Amann. 1999. Phy­lo­ge­ny and di­ver­si­ty of Achromatium oxaliferum. Sys­tem. Appl. Mi­cro­bi­ol. 22:28-38. [ncbi page] [internal download]
Snaidr, J., B. M. Fuchs, G. Wallner, M. Wagner, K. H. Schleifer, and R. Amann. 1999. Phy­lo­ge­ny and in situ iden­ti­fi­ca­ti­on of a mor­pho­lo­gi­cal­ly con­spi­cuous bac­te­ri­um, Candidatus Ma­gnos­pi­ra bak­ii, pre­sent in very low fre­quen­cy in ac­tiva­ted sludge. En­vi­ron. Mi­cro­bi­ol. 1:125-136. [ncbi page] [internal download]
Rabus, R., H. Wilkes, A. Schramm, G. Harms, A. Behrends, R. Amann, and F. Widdel. 1999. An­ae­ro­bic uti­liza­t­i­on of al­kyl­ben­ze­nes and n-al­ka­nes from cru­de oil in an en­rich­ment cul­tu­re of de­ni­tri­fy­ing bac­te­ria af­fi­lia­ting with the beta-sub­class of Proteobacteria. En­vi­ron. Mi­cro­bi­ol. 1:145-158. [ncbi page] [internal download]
Dubilier, N., R. Amann, C. Erseus, G. Muyzer, S. Y. Park, O. Giere, and C. M. Cavanaugh. 1999. Phy­lo­ge­ne­tic di­ver­si­ty of bac­te­ri­al en­do­sym­bi­onts in the gut­less ma­ri­ne oli­go­che­te Olavius loisae (An­ne­l­i­da) Mar. Ecol. Prog. Ser. 178:271-280. [meps page] [internal download]
Meier, H., R. Amann, W. Ludwig, and K. H. Schleifer. 1999. Spe­ci­fic oli­go­nu­cleo­ti­de pro­bes for the in situ de­tec­tion of a ma­jor group of Gram-po­si­ti­ve bac­te­ria with low DNA G+C con­tent. Syst. Appl. Mi­cro­bi­ol. 22:186-196. [ncbi page] [internal download]
Schulze, R., S. Spring, R. Amann, I. Huber, W. Ludwig, K.-H. Schleifer, and P. Kämpfer. 1999. Ge­no­ty­pic di­ver­si­ty of Acidovorax strains iso­la­ted from ac­tiva­ted sludge and de­scrip­ti­on of Acidovorax defluvii sp. nov. Syst. Appl. Mi­cro­bi­ol. 22:205-214. [ncbi page] [internal download]
Rossello-Mora, R., B. Thamdrup, H. Schäfer, R. Weller, and R. Amann. 1999. The re­pon­se of the mi­cro­bi­al com­mu­ni­ty of ma­ri­ne se­di­ments to or­ga­nic car­bon in­put un­der an­ae­ro­bic con­di­ti­ons. Syst. Appl. Mi­cro­bi­ol. 22:237-248. [ncbi page] [internal download]
Zubkov, M. V., B.M. Fuchs, H. Eilers, P. H. Burkill, and R. Amann. 1999. De­ter­mi­na­ti­on of to­tal pro­te­in con­tent of bac­te­ri­al cells using SY­PRO stai­ning and flow cy­to­metry. Appl. En­vi­ron. Mi­cro­bi­ol. 65:3251-3257. [ncbi page] [download pdf]
Simon, M., F. O. Glöckner, and R. Amann. 1999. Dif­fe­rent com­mu­ni­ty struc­tu­re and tem­pe­ra­tu­re op­ti­ma of he­te­ro­tro­phic pi­co­plank­ton in va­rious re­gi­ons of the Sou­thern Oce­an. Aqua­tic Mi­crob. Ecol. 18:275-284. [ame page] [internal download]
Glöckner, F. O., B. M. Fuchs, and R. Amann. 1999. Bac­te­rio­plank­ton com­po­si­ti­ons of lakes and oce­ans: a first com­pa­ri­son ba­sed on fluo­re­scence in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 65:3721-3726. [ncbi page] [download pdf]
Schramm, A., D. De Beer, J. C van den Heuvel, S. Ottengraf, and R. Amann. 1999. Mi­cro­s­ca­le dis­tri­bu­ti­on of po­pu­la­ti­ons and ac­tivi­ties of Nitrosospira and Nitrospira spp. along a ma­cro­s­ca­le gra­di­ent in a ni­tri­fy­ing bio­re­ac­tor: quan­ti­fi­ca­ti­on by in situ hy­bri­di­za­t­i­on and the use of mi­cro­sen­sors. Appl. En­vi­ron. Mi­cro­bi­ol. 65:3690-3696. [ncbi page] [download pdf]
Sahm, K., C. Knoblauch, and R. Amann. 1999. Phy­lo­ge­ne­tic af­fi­lia­ti­on and quan­ti­fi­ca­ti­on of psy­chro­phi­lic sul­fa­te-re­du­cing iso­la­tes in ma­ri­ne arc­tic se­di­ments Appl. En­vi­ron. Mi­cro­bi­ol. 65:3976-3981. [ncbi page] [download pdf]
Ravenschlag, K., K. Sahm, J. Pernthaler, and R. Amann. 1999. High bac­te­ri­al di­ver­si­ty in per­man­ent­ly cold ma­ri­ne se­di­ments. Appl. En­vi­ron. Mi­cro­bi­ol. 65:3882-3989. [ncbi page] [download pdf]
Schramm, A., C. M. Santegoeds, H. K. Nielsen, H. Ploug, M. Wagner, M. Pribyl, J. Wanner, R. Amann, and D. De Beer. 1999. On the oc­cur­rence of an­oxic mi­cro­ni­ches, de­ni­tri­fi­ca­ti­on, and sul­fa­te re­duc­tion in ae­ra­ted ac­tiva­ted sludge. Appl. En­vi­ron. Mi­cro­bi­ol. 65:4189-4196. [ncbi page] [download pdf]
Anton, J., E. Llobet-Brossa, F. Rodriguez-Valera, and R. Amann. 1999. Fluo­re­scence in situ hy­bri­di­za­t­i­on ana­ly­sis of the pro­ka­ryo­tic com­mu­ni­ty in­ha­b­it­ing crys­tal­li­zer ponds. En­vi­ron. Mi­cro­bi­ol. 1:517-523. [ncbi page] [internal download]
Daims, H., A. Brühl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The do­main­spe­ci­fic pro­be EU­B338 is in­suf­fi­ci­ent for the de­tec­tion of all Bac­te­ria: De­ve­lop­ment and eva­lua­ti­on of a more com­pre­hen­si­ve pro­be set. Syst. Appl. Mi­cro­bi­ol. 22:434-444. [ncbi page] [internal download]
Berchtold, M., A. Chatzinotas, W. Schönhuber, A. Brune, R. Amann, D. Hahn, and H. König. 1999. Dif­fe­ren­ti­al en­u­me­ra­ti­on and in situ lo­ca­liza­t­i­on of mi­cro­or­ga­nisms in the hind­gut of the lo­wer ter­mi­te Mastotermes darwiniensis by hy­bri­di­za­t­i­on with rRNA-tar­ge­ted pro­bes. Arch. Mi­cro­bi­ol. 172:407-416. [ncbi page] [internal download]

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Schramm, A., and R. Amann. 1999. Nu­cleic acid-ba­sed tech­ni­ques for ana­ly­zing the di­ver­si­ty, struc­tu­re, and dy­na­mics of mi­cro­bi­al com­mu­nities in was­te­wa­ter tre­at­ment, p. 85-108. In: Bio­tech­no­lo­gy: a mul­ti vo­lu­me com­pre­hen­si­ve trea­ti­se, H.-J. Rehm, G. Reed, A. Püh­ler, and P.I.W. Stad­ler (eds.), Vol. 11a, En­vi­ron­men­tal Pro­ces­ses I, J. Win­ter (ed.), Wi­ley-VCH Ver­lag GmbH, Wein­heim, Ger­ma­ny. [internal download]
Amann, R.. 1999. FIS­Hen im Un­sicht­ba­ren. Che­mie heu­te. Aus­ga­be 1999/​2000, p.118-123. [internal download]

1998

Ludwig, W., R. Amann, E. Martinez-Romero, W. Schönhuber, S. Bauer, A. Neef, and K.-H. Schleifer. 1998. rRNA ba­sed iden­ti­fi­ca­ti­on and de­tec­tion sys­tems for rhizo­bia and other bac­te­ria. Plant and Soil 204:1-19. [springerlink page] [internal download]
Spring, S., U. Lins, R. Amann, K.-H. Schleifer, L. C. S. Ferreira, D. M. S. Esquivel, and M. Farina. 1998. Phy­lo­ge­ne­tic af­fi­lia­ti­on and ul­tra­struc­tu­re of un­cul­tu­red ma­gne­tic bac­te­ria with unusu­al lar­ge ma­gne­to­so­mes. Arch. Mi­cro­bi­ol. 169:136-147. [ncbi page] [internal download]
Stoffels, M., R. Amann, W. Ludwig, D. Hekmat, and K.-H. Schleifer. 1998. Bac­te­ri­al com­mu­ni­ty dy­na­mics du­ring start-up of a trick­le-bed bio­re­ac­tor de­gra­ding aro­ma­tic com­pounds. Appl. En­vi­ron. Mi­cro­bi­ol. 64:930-939. [ncbi page] [download pdf]
Amann, R., H. Lemmer, and M. Wagner. 1998. Mo­ni­to­ring the com­mu­ni­ty struc­tu­re of was­te­wa­ter tre­at­ment plants: a com­pa­ri­son of old and new tech­ni­ques. FEMS Mi­cro­bi­ol. Ecol. 25:205-215. [sciencedirect page] [internal download]
Glöckner, F.O., H. D. Babenzien, and R. Amann. 1998. Phy­lo­ge­ny and iden­ti­fi­ca­ti­on in situ of Nevskia ramosa. Appl. En­vi­ron. Mi­cro­bi­ol. 64:1895-1901. [ncbi page] [download pdf]
Hekmat, D., R. Amann, A. Linn, M. Stephan, M. Stoffels, and D. Vortmeyer. 1998. Bio­film po­pu­la­ti­on dy­na­mics in a trick­le-bed bio­re­ac­tor. Wat. Sci. Tech­nol. 37(4-5):167-170. [wst page] [internal download]
Schramm, A., D. De Beer, H. van den Heuvel, S. Ottengraf, and R. Amann. 1998. In situ Struc­tu­re/​Func­tion stu­dies in was­te­wa­ter tre­at­ment sys­tems. Wat. Sci. Tech­nol. 37(4-5):413-416. [wst page] [internal download]
Llobet-Brossa, E., R. Rossello-Mora, and R. Amann. 1998. Mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on of Wad­den Sea se­di­ments as re­vea­led by fluo­re­scence in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 64:2691-2696. [ncbi page] [download pdf]
Amann, R., and M. Kühl. 1998. In situ me­thods for as­sess­ment of mi­cro­or­ga­nisms and their ac­tivi­ties. Curr. Opin. Mi­cro­bi­ol. 1:352-358. [ncbi page] [internal download]
Hahn, D., A. Hess, R. Amann, and J. Zeyer. 1998. In situ iden­ti­fi­ca­ti­on of bac­te­ri­al po­pu­la­ti­ons in ter­restri­al ha­bi­tats wi­thout cul­ti­va­ti­on. Col­la­na Am­bi­en­te 20:41-65. [internal download]
Schramm, A., D. De Beer, M. Wagner, and R. Amann. 1998. Iden­ti­fi­ca­ti­on and ac­tivi­ties in situ of Nitrosospira and Nitrospira spp. as do­mi­nant po­pu­la­ti­ons in a ni­tri­fy­ing flui­di­zed bed re­ac­tor. Appl. En­vi­ron. Mi­cro­bi­ol. 64:3480-3485. [ncbi page] [download pdf]
Pernthaler, J., F.-O. Glöckner, S. Unterholzner, A. Alfreider, R. Psenner and R. Amann. 1998. Sea­so­nal com­mu­ni­ty and po­pu­la­ti­on dy­na­mics of pel­agic bac­te­ria and ar­chaea in a high moun­tain lake. Appl. En­vi­ron. Mi­cro­bi­ol. 64:4299-4306. [ncbi page] [download pdf]
Frahm, E., I. Heiber, S. Hoffmann, C. Koob, H. Meier, W. Ludwig, R. Amann, K. H. Schleifer, and U. Obst. 1998. Ap­p­li­ca­ti­on of 23S rDNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes spe­ci­fic for en­te­ro­coc­ci to wa­ter hy­gie­ne con­trol. Sys­tem. Appl. Mi­cro­bi­ol. 21:450-453. [ncbi page] [internal download]
Neef, A., R. Amann, H. Schlesner, and K. H. Schleifer. 1998. Mo­ni­to­ring a wi­de­s­pre­ad bac­te­ri­al group: in situ de­tec­tion of planc­to­my­ce­tes with 16S rRNA-tar­ge­ted pro­bes. Mi­cro­bio­lo­gy 144:3257-3266. [ncbi page] [internal download]
Fuchs, B., G. Wallner, W. Beisker, I. Schwippel, W. Ludwig, and R. Amann. 1998. Flow cy­to­metric ana­ly­sis of in situ ac­ces­si­bi­li­ty of Escherichia coli 16S rRNA for fluo­re­scent­ly la­be­led oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 64:4973-4982. [ncbi page] [download pdf]
Chatzinotas, A., R. A. Sandaa, W. Schönhuber, R. Amann, F. L. Daae, V. Torsvik, J. Zeyer, and D. Hahn. 1998. Ana­ly­sis of broad-sca­le dif­fe­ren­ces in mi­cro­bi­al com­mu­ni­ty com­po­si­ti­on of two pris­ti­ne fo­rest soils. Syst. Appl. Mi­cro­bi­ol. 21:579-587. [ncbi page] [internal download]
Michel, R., K.-D. Müller, R. Amann, and E. N. Schmid. 1998. Legionella-like slen­der rods mul­ti­ply­ing wi­t­hin a strain of Acanthamoeba sp. iso­la­ted from drin­king wa­ter. Pa­ra­si­tol. Res. 60:84-88. [ncbi page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., and H. Lemmer. 1998. Grund­la­gen der in situ-Ana­ly­se von Struk­tur und Dy­na­mik kom­ple­xer mi­kro­bi­el­ler Le­bens­ge­mein­schaf­ten mit rRNS-Son­den und ihre Be­deu­tung für die was­ser­wirt­schaft­li­che Pra­xis. Münch­ner Bei­trä­ge zur Ab­was­ser-, Fi­sche­rei- und Fluß­bio­lo­gie 52:11-24. [internal download]
Lemmer, H., A. Zaglauer, A. Neef, and R. Amann. 1998. In situ-Nach­weis der do­mi­na­ten De­ni­tri­fi­kan­ten­po­pu­la­ti­on zur bio­lo­gisch be­grün­de­ten Be­triebs­op­ti­mie­rung der me­tha­nol­ge­stütz­ten De­ni­tri­fi­ka­ti­on in ei­nem Sand­fil­ter. Münch­ner Bei­trä­ge zur Ab­was­ser-, Fi­sche­rei- und Fluß­bio­lo­gie 52:43-60. [internal download]
Pernthaler, J., T. Posch, K. Simek, J. Vrba, R. Psenner, and R. Amann. 1998. Pro­tis­ten­in­du­zier­te Po­pu­la­ti­ons­ver­schie­bun­gen in ei­ner ex­pe­ri­men­tel­len mi­kro­bi­el­len Ge­mein­schaft. Münch­ner Bei­trä­ge zur Ab­was­ser-, Fi­sche­rei- und Fluß­bio­lo­gie 52:117-126. [internal download]
Pernthaler, J., A. Alfreider, B. Sattler, F.-O. Glöckner, R. Amann, and R. Psenner. 1998. Struk­tur­ana­ly­se der Bak­te­ri­en­ge­mein­schaf­ten in ei­nem hoch­al­pi­nen See. Münch­ner Bei­trä­ge zur Ab­was­ser-, Fi­sche­rei- und Fluß­bio­lo­gie 52:127-136. [internal download]
Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, and K.-H. Schleifer. 1998. Nach­weis von En­te­ro­kok­ken mit fluo­res­zie­ren­den rRNS-ge­rich­te­ten Son­den zur hy­gie­ni­schen Trink­was­ser­kon­trol­le. Münch­ner Bei­trä­ge zur Ab­was­ser-, Fi­sche­rei- und Fluß­bio­lo­gie 52:175-200. [internal download]
Wagner, M., P. Hutzler, and R. Amann. 1998. Three di­men­sio­nal ana­ly­sis of com­plex mi­cro­bi­al com­mu­nities by com­bi­ning con­fo­cal la­ser scan­ning mi­cro­sco­py and fluo­re­scence in situ hy­bri­di­za­t­i­on, p. 467-486. In: Di­gi­tal image ana­ly­sis of mi­cro­bes: ima­ging, mor­pho­me­try, fluo­ro­me­try and mo­ti­li­ty tech­ni­ques and ap­p­li­ca­ti­ons. M.H.F. Wil­kin­son and F. Schut. (eds.). John Wi­ley & Sons, Ltd., Chi­ches­ter, UK. [internal download]
Schramm, A., and R. Amann. 1998. In situ struc­tu­re and func­tion ana­ly­sis of bio­films. p.45-54 in: Tech­nik an­ae­rober Pro­zes­se, (Eds.) H. Märkl, R. Steg­mann, DE­CHE­MA­F­ach­ge­sprä­che Um­welt­schutz, DE­CHE­MA e.V., Frank­furt am Main, Ger­ma­ny. [internal download]
Amann, R. 1998. Ent­wick­lung und Ein­satz von Nu­kle­in­säu­re­son­den für die in situ-Cha­rak­te­ri­sie­rung na­tür­li­cher Bak­te­ri­en­ge­mein­schaf­ten, p. 55-72. In: Jahr­buch der Aka­de­mie der Wis­sen­schaf­ten zu Göt­tin­gen, Van den Hoeck & Rupp­recht, Göt­tin­gen, Ger­ma­ny. [internal download]
Michel, R., R. Hoffmann, K.-D. Müller, R. Amann, and E. N. Schmidt. 1998. Akant­ha­mo­eben, Na­eg­le­ri­en und an­de­re frei­le­ben­de Amö­ben als na­tür­li­che Dau­er­pro­du­zen­ten von nicht kul­ti­vier­ba­ren Bak­te­ri­en. Mitt. Österr. Ges. Tro­pen­med. Pa­ra­si­tol. 20:85-92. [internal download]

 

1997

Amann, R., N. Springer, W. Schönhuber, W. Ludwig, E.N. Schmidt, K.-D. Müller and R. Michel. 1997. Ob­li­ga­te in­tra­cel­lu­lar bac­te­ri­al pa­ra­si­tes of acant­ha­moebae re­la­ted to Chlamydia spp. Appl. En­vi­ron. Mi­cro­bi­ol. 63:115-121. [ncbi page] [download pdf]
Pernthaler, J., T. Posch, K. Simek, J. Vrba, R. Amann, and R. Psenner. 1997. Con­tras­ting bac­te­ri­al stra­te­gies to co­exist with a fla­gel­la­te pre­da­tor in an ex­pe­ri­men­tal mi­cro­bi­al as­sem­bla­ge. Appl. En­vi­ron. Mi­cro­bi­ol. 63:596-601. [ncbi page] [download pdf]
Erhart, R., D. Bradford, E.M. Seviour, R.J. Seviour, R.I. Amann, and L.L. Blackall. 1997. De­ve­lop­ment and use of fluo­re­scent in situ hy­bri­di­sa­ti­on pro­bes for the iden­ti­fi­ca­ti­on and en­u­me­ra­ti­on of "Microthrix parvicella" in ac­tiva­ted sludge. Syst. Appl. Mi­cro­bi­ol. 20:310-318. [sciencedirect page] [internal download]
Eberl, L., R. Schulze, A. Ammendola, O. Geisenberger, R. Erhart, C. Sternberg, S. Molin, and R. Amann. 1997. Use of green fluo­re­scent pro­te­in as a mar­ker for eco­lo­gi­cal stu­dies of ac­tiva­ted sludge com­mu­nities. FEMS Mi­cro­bi­ol. Lett. 149:77-83. [sciencedirect page] [internal download]
Amann, R., F.-O. Glöckner, and A. Neef. 1997. Mo­dern me­thods in sub­sur­face mi­cro­bio­lo­gy: in situ iden­ti­fi­ca­ti­on of mi­cro­or­ga­nisms with nu­cleic acid pro­bes. FEMS Mi­cro­bi­ol. Rev. 20(3/4):191-200. [sciencedirect page] [internal download]
Steinert, M., L. Emödy, R. Amann, and J. Hacker. 1997. Re­susci­ta­ti­on of via­ble but non­cul­tura­ble Legionella pneumophila Phil­adel­phia JR32 by Acanthamoeba castellanii. Appl. En­vi­ron. Mi­cro­bi­ol. 63:2047-2053. [ncbi page] [download pdf]
Kosse, D., H. Seiler, R. Amann, W. Ludwig, and S. Scherer. 1997. Iden­ti­fi­ca­ti­on of yo­ghurt-spoi­ling yeasts with 18S rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Syst. Appl. Mi­cro­bi­ol. 20:468-480. [sciencedirect page] [internal download]
Snaidr, J., R. Amann, I. Huber, W. Ludwig, and K.-H. Schleifer. 1997. Phy­lo­ge­ne­tic ana­ly­sis and in situ iden­ti­fi­ca­ti­on of bac­te­ria in ac­tiva­ted sludge. Appl. En­vi­ron. Mi­cro­bi­ol. 63:2884-2896. [ncbi page] [download pdf]
Amann, R., N. Springer, W. Schönhuber, W. Ludwig, E. N. Schmidt, K.-D. Müller and R. Michel. 1997. Coc­co­id ob­li­ga­te in­tra­cel­lu­lar pa­ra­si­tes of acant­ha­moebae are dis­tant­ly re­la­ted to the ge­nus Chlamydia. En­do­cy­to­bio­sis & Cell Res. 12:99-101. [ecs page] [internal download]
Lemmer, H., A. Zaglauer, A. Neef, H. Meier, and R. Amann. 1997. De­ni­tri­fi­ca­ti­on in a me­tha­nol-fed fi­xed bed re­ac­tor. Part 2: Com­po­si­ti­on and eco­lo­gy of the bac­te­ri­al com­mu­ni­ty in the bio­films. Wa­ter Res. 31:1903-1908. [sciencedirect page] [internal download]
Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, S. Hoffmann, U. Obst, and K.-H. Schleifer. 1997. De­tec­tion of en­te­ro­coc­ci with rRNA-tar­ge­ted DNA pro­bes and their use for hy­gie­nic drin­king wa­ter con­trol. Wat. Sci. Tech. 35(11-12):437-444. [wst page] [internal download]
Schönhuber, W., B. Fuchs, S. Juretschko, and R. Amann. 1997. Im­pro­ved sen­si­ti­vi­ty of who­le cell hy­bri­di­za­t­i­on by the com­bi­na­ti­on of hor­sera­dish per­oxi­da­se-la­be­led oli­go­nu­cleo­ti­des and ty­ra­mi­de si­gnal am­pli­fi­ca­ti­on. Appl. En­vi­ron. Mi­cro­bi­ol. 63:3268-3273. [ncbi page] [download pdf]
Schramm, A., L. H. Larsen, N. P. Revsbech, and R. I. Amann. 1997. Struc­tu­re and func­tion of a ni­tri­fy­ing bio­film as de­ter­mi­ned by mi­cro­elec­tro­des and fluo­re­scent oli­go­nu­cleo­ti­de pro­bes. Wat. Sci. Tech. 36(1):263-270. [wst page] [internal download]
Zarda, B., D. Hahn, A. Chatzinotas, W. Schönhuber, A. Neef, R. I. Amann, and J. Zeyer. 1997. Ana­ly­sis of bac­te­ri­al com­mu­ni­ty struc­tu­re in bulk soil by in situ hy­bri­di­za­t­i­on. Arch. Mi­cro­bi­ol. 168:185-192. [springerlink page] [internal download]
Wallner, G., B. Fuchs, W. Beisker, S. Spring, and R. Amann. 1997. Flow cy­to­metric sor­ting of mi­cro­or­ga­nisms for mole­cu­lar ana­ly­sis. Appl. En­vi­ron. Mi­cro­bi­ol. 63: 4223-4331. [ncbi page] [download pdf]
Lischewski, A., M. Kretschmar, H. Hof, R. Amann, J. Hacker, and J. Morschhäuser. 1997. De­tec­tion and iden­ti­fi­ca­ti­on of Candida spe­cies in ex­pe­ri­men­tal­ly in­fec­ted tis­sue and hu­man blood by rRNA-spe­ci­fic fluo­re­scent in situ hy­bri­di­za­t­i­on. J. Clin. Mi­cro­bi­ol. 35:2943-2948. [ncbi page] [download pdf]

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Wagner, M., and R. Amann. 1997. Mole­cu­lar tech­ni­ques for de­ter­mi­ning mi­cro­bi­al com­mu­ni­ty struc­tu­res in ac­tiva­ted sludge, p. 61-72. In: Mi­cro­bi­al com­mu­ni­ty ana­ly­sis: the key to the de­sign of bio­lo­gi­cal was­te­wa­ter tre­at­ment sys­tems. IAWQ Sci­en­ti­fic and Tech­ni­cal Re­port No. 5 Eds. T.E. Cloe­te and N.Y.O. Muy­ima. Uni­ver­si­ty Press, Cam­bridge, UK. [internal download]
Amann, R.. 1997. Fluo­re­scent, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes for ana­ly­zing the in situ struc­tu­re and dy­na­mics of com­plex mi­cro­bi­al com­mu­nities, p. 141-145. In: Pro­cee­dings of the In­ter­na­tio­nal Sym­po­si­um on En­vi­ron­men­tal Mi­cro­bio­lo­gy, Oos­ten­de, April 21-23, 1997. H. Ver­ach­tert and W. Ver­strae­te (eds.). Tech­no­lo­gisch In­sti­tuut, Uni­ver­sit­eit Gent, Gent, Bel­gi­um. [internal download]

1996

Springer, N., R. Amann, W. Ludwig, K.-H. Schleifer, and H. Schmidt. 1996. Polynucleobacter necessarius, an ob­li­ga­te bac­te­ri­al en­do­sym­bi­ont of the hy­potri­chous ci­lia­te Euplotes ediculatus, is a mem­ber of the ß-sub­class of Pro­te­ob­ac­te­ria. FEMS Mi­crob. Lett. 135:333-336. [ncbi page] [internal download]
Wagner, M., G. Rath, H.-P. Koops, J. Flood, and R. Amann. 1996. In situ ana­ly­sis of ni­tri­fy­ing bac­te­ria in se­wa­ge tre­at­ment plants. Wat. Sci. Tech. 34(1-2):237-244. [wst page] [internal download]
Kämpfer, P., R. Erhart, C. Beimfohr, J. Böhringer, M. Wagner, and R. Amann. 1996. Cha­rac­te­riza­t­i­on of bac­te­ri­al com­mu­nities from ac­tiva­ted sludge plant: cul­tu­re-de­pen­dent nu­me­ri­cal iden­ti­fi­ca­ti­on ver­sus in situ iden­ti­fi­ca­ti­on using group- and ge­nus-spe­ci­fic rR­NA­tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Mi­crob. Ecol. 32:101-121. [ncbi page] [internal download]
Manz, W., R. Amann, W. Ludwig, M. Vancanneyt, and K.-H. Schleifer. 1996. Ap­p­li­ca­ti­on of a sui­te of 16S rRNA-spe­ci­fic oli­go­nu­cleo­ti­de pro­bes de­si­gned to in­ves­ti­ga­te bac­te­ria of the phyl­um cy­to­pha­ga-flav­o­bac­ter-bac­te­ro­ides in the na­tu­ral en­vi­ron­ment. Mi­cro­bi­ol. 142:1097-1106. [ncbi page] [internal download]
Alfreider, A., J. Pernthaler, R. Amann, B. Sattler, F.-O. Glöckner, A. Wille and R. Psenner. 1996. Com­mu­ni­ty ana­ly­sis of the bac­te­ri­al as­sem­bla­ges in the win­ter co­ver and pel­agic lay­ers of a high moun­tain lake using in situ hy­bri­di­za­t­i­on. Appl. En­vi­ron. Mi­cro­bi­ol. 62:2138-2144. [ncbi page] [download pdf]
Weiss, P., B. Schweitzer, R. Amann, and M. Simon. 1996. Iden­ti­fi­ca­ti­on in situ and dy­na­mics of bac­te­ria on lim­ne­tic or­ga­nic ag­gre­ga­tes (lake snow). Appl. En­vi­ron. Mi­cro­bi­ol. 62:1998-2005. [ncbi page] [download pdf]
Glöckner, F.O., R. Amann, A. Alfreider, J. Pernthaler, R. Psenner, K. Trebesius, and K.-H. Schleifer. 1996. An op­ti­mi­zed in situ hy­bri­di­za­t­i­on pro­to­col for plank­to­nic bac­te­ria. Syst. Appl. Mi­cro­bi­ol. 19:403-406. [sciencedirect page] [internal download]
Lange, M., N. Simon, L. Guillou, D. Vaulot, R. Amann, W. Ludwig, and L. K. Medlin. 1996. Iden­ti­fi­ca­ti­on of the class Prymne­sio­phy­ceae and the ge­nus Phaeo­cys­tis with rR­NA­tar­ge­ted nu­cleic acid pro­bes. J. Phy­col. 32:858-868. [wiley online library] [internal download]
Amann, R., J. Snaidr, M. Wagner, W. Ludwig and K.-H. Schleifer. 1996. In situ vi­sua­liza­t­i­on of high ge­ne­tic di­ver­si­ty in a na­tu­ral mi­cro­bi­al com­mu­ni­ty. J. Bac­te­ri­ol. 178: 3496-3500. [ncbi page] [download pdf]
Lischewski, A., R. I. Amann, D. Harmsen, H. Merkert, J. Hacker and J. Mörschenhäuser. 1996. Spe­ci­fic de­tec­tion of Candida albicans and Candida tropicalis by fluo­re­scent in situ ybri­di­za­t­i­on with an 18S rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­be. Mi­cro­bio­lo­gy 142:2731-2740. [ncbi page] [internal download]
Lloyd, D., A. G. Williams, R. Amann, A. J. Hayes, L. Durrant, and J. R. Ralphs. 1996. In­tra­cel­lu­lar pro­ka­ryo­tes in ru­men ci­lia­te pro­to­zoa: de­tec­tion by con­fo­cal la­ser scan­ning mi­cro­sco­py af­ter in situ hy­bri­di­za­t­i­on with fluo­re­scent 16S rRNA pro­bes. Eu­rop. J. Pro­tis­tol. 32:523-53. [sciencedirect page] [download pdf]
Nübel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Se­quence he­te­ro­gen­ei­ties of ge­nes en­co­ding 16S rR­N­As in Paenibacillus polymyxa de­tec­ted by tem­pe­ra­tu­re gra­di­ent gel elec­tro­pho­re­sis. J. Bac­te­ri­ol. 178:5636-5643. [ncbi page] [download pdf]
Neef, A., A. Zaglauer, H. Meier, R. Amann, H. Lemmer, and K.-H. Schleifer. 1996. Po­pu­la­ti­on ana­ly­sis in a de­ni­tri­fy­ing sand fil­ter: con­ven­tio­nal and in situ iden­ti­fi­ca­ti­on of Paracoccus sp. in me­tha­nol-fed bio­films. Appl. En­vi­ron. Mi­cro­bi­ol. 62:4329-4339. [ncbi page] [download pdf]
Schramm, A., L.H. Larsen, N. P. Revsbech, N. B. Ramsing, R. Amann, and K.-H. Schleifer. 1996. Struc­tu­re and func­tion of a ni­tri­fy­ing bio­film as de­ter­mi­ned by in situ hy­bri­di­za­t­i­on and mi­cro­elec­tro­des. Appl. En­vi­ron. Mi­cro­bi­ol. 62:4641-4647. [ncbi page] [download pdf]
Wallner, G., I. Steinmetz, D. Bitter-Suermann, and R. Amann. 1996. Com­bi­na­ti­on of rRNA-tar­ge­ted hy­bri­di­za­t­i­on pro­bes and im­mu­no-pro­bes for the iden­ti­fi­ca­ti­on of bac­te­ria by flow cy­to­metry. Syst. Appl. Mi­cro­bi­ol. 19:569-576. [sciencedirect page] [internal download]
Amann, R., W. Ludwig, R. Schulze, S. Spring, E. Moore, and K.-H. Schleifer. 1996. rRNA-Tar­ge­ted oli­go­nu­cleo­ti­de pro­bes for the iden­ti­fi­ca­ti­on of ge­nui­ne and for­mer pseu­do­mo­nads. Syst. Appl. Mi­cro­bi­ol. 19:501-509. [sciencedirect page] [internal download]
Rothemund, C., R. Amann, S. Klugbauer, W. Manz, C. Bieber, K.-H. Schleifer, and P. Wilderer. 1996. Mi­crof­lo­ra of 2,4-di­chlo­ro­phen­ox­ya­ce­tic acid de­gra­ding bio­films on gas per­me­able mem­bra­nes. Syst. Appl. Mi­cro­bi­ol. 19:608-615. [sciencedirect page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R.. 1996. In situ-Iden­ti­fi­zie­rung von Mi­kro­or­ga­nis­men mit rRNS-ge­rich­te­ten Oli­go­nu­kleo­tid­son­den. Bio­spek­trum 2 (1):27-32. [internal download]
Springer, N., R. Amann, and W. Ludwig. 1996. The de­sign and ap­p­li­ca­ti­on of ri­bo­so­mal RNA-tar­ge­ted, fluo­re­scent oli­go­nu­cleo­ti­de pro­bes for the iden­ti­fi­ca­ti­on of en­do­sym­bi­onts in pro­to­zoa, p. 133-144. In: Me­thods in Mole­cu­lar Bio­lo­gy, Vol. 50: Spe­cies Dia­gnostics Pro­to­cols: PCR and other nu­cleic acid me­thods. J.P. Clapp (Ed.), Hu­ma­na Press Inc., To­to­wa NJ, USA. [ncbi page] [internal download]
Wallner, G., and R. Amann. 1996. Durch­fluß­zy­to­me­tri­sche Un­ter­su­chung von Be­lebt­schlamm mit rRNS-ge­rich­te­ten Oli­go­nu­kleo­tid­son­den, p. 81-92. In H. Lem­mer, T. Grie­be, H.-C. Flem­ming (eds.), Mi­kro­bi­el­le Öko­lo­gie des Ab­was­sers. Sprin­ger Ver­lag, Ber­lin. [internal download]
Wagner, M., and R. Amann. 1996. Die An­wen­dung von in situ Hy­bri­di­sie­rungs­son­den zur Auf­klä­rung von Struk­tur und Dy­na­mik der mi­kro­bi­el­len Biozö­no­sen in der Ab­was­ser­rei­ni­gung, p. 93-110. In H. Lem­mer, T. Grie­be, H.-C. Flem­ming (eds.), Mi­kro­bi­el­le Öko­lo­gie des Ab­was­sers. Sprin­ger Ver­lag, Ber­lin. [internal download]

 

1995

Manz, W., R. Szewzyk, U. Szewzyk, P. Hutzler, R. Amann and K. H. Schleifer. 1995. In situ iden­ti­fi­ca­ti­on of Legionellaceae using spe­ci­fic rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes and con­fo­cal la­ser scan­ning mi­cro­sco­py. Mi­cro­bi­ol. 141:29-39. [ncbi page] [internal download]
Rossello-Mora, R. A., M. Wagner, R. Amann, and K. H. Schleifer. 1995. The ab­un­dance of Zoogloea ramigera in se­wa­ge tre­at­ment plants. Appl. En­vi­ron. Mi­cro­bi­ol. 61:702-707. [ncbi page] [download pdf]
Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phy­lo­ge­ne­tic iden­ti­fi­ca­ti­on and in situ de­tec­tion of in­di­vi­du­al mi­cro­bi­al cells wi­thout cul­ti­va­ti­on. Mi­cro­bi­ol. Rev. 59:143-169. [ncbi page] [download pdf]
Assmus, B., P. Hutzler, G. Kirchhof, R. Amann, J.R. Lawrence, and A. Hartmann. 1995. In situ lo­ca­liza­t­i­on of Azospirillum brasilense in the rhi­zo­s­phe­re of wheat using fluo­re­scent­ly la­be­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes and scan­ning con­fo­cal la­ser mi­cro­sco­py. Appl. En­vi­ron. Mi­cro­bi­ol. 61:1013-1019. [ncbi page] [download pdf]
Raskin, L., R. I. Amann, L. K. Poulsen, B. E. Rittmann, and D. A. Stahl. 1995. Use of ri­bo­so­mal RNA-ba­sed mole­cu­lar pro­bes for cha­rac­te­riza­t­i­on of com­plex mi­cro­bi­al com­mu­nities in an­ae­ro­bic bio­films. Wat. Sci. Techol. 31:261-272. [wst page] [internal download]
Wallner, G., R. Erhart, and R. Amann. 1995. Flow cy­to­metric ana­ly­sis of ac­tiva­ted sludge with rRNA-tar­ge­ted pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 61:1859-1866. [ncbi page] [download pdf]
Fischer, K., D. Hahn, R. I. Amann, O. Daniel, and J. Zeyer. 1995. In situ ana­ly­sis of the bac­te­ri­al com­mu­ni­ty in the gut of the ear­thworm Lumbricus terrestris L. by who­le-cell hy­bri­di­za­t­i­on. Can. J. Mi­cro­bi­ol. 41:666-673. [cjm page] [internal download]
Neef, A., R. Amann, and K.-H. Schleifer. 1995. De­tec­tion of mi­cro­bi­al cells in ae­ro­sols using nu­cleic acid pro­bes. Syst. Appl. Mi­cro­bi­ol. 18:113-122. [sciencedirect page] [internal download]
Amann, R. I.. 1995. Fluo­re­scent­ly la­bel­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes in the stu­dy of mi­cro­bi­al eco­lo­gy. Mol. Ecol. 4:543-554. [wiley online library] [internal download]
Rossello-Mora, R. A., W. Ludwig, P. Kämpfer, R. Amann, and K.-H. Schleifer. 1995. Ferrimonas balearica, gen. nov., spec. nov., a new ma­ri­ne fa­cul­ta­ti­ve Fe(III)-re­du­cing bac­te­ri­um. Syst. Appl. Mi­cro­bi­ol. 18:196-202. [sciencedirect page] [internal download]
Wagner, M., G. Rath, R. Amann, H.-P. Koops, and K.-H. Schleifer. 1995. In situ iden­ti­fi­ca­ti­on of am­mo­nia-oxi­di­zing bac­te­ria. Syst. Appl. Mi­cro­bi­ol. 18:251-264. [sciencedirect page] [internal download]
Schleifer, K.-H., M. Ehrmann, C. Beimfohr, E. Brockmann, W. Ludwig and R. Amann. 1995. Ap­p­li­ca­ti­on of mole­cu­lar me­thods for the clas­si­fi­ca­ti­on and iden­ti­fi­ca­ti­on of lac­tic acid bac­te­ria. Int. Dai­ry J. 5:1081-1094. [sciencedirect page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R. I.. 1995. In situ iden­ti­fi­ca­ti­on of mi­cro­or­ga­nisms by who­le cell hy­bri­di­za­t­i­on with rRNA-tar­ge­ted nu­cleic acid pro­bes, 3.3.6., p. 1-15. In: Mole­cu­lar Mi­cro­bi­al Eco­lo­gy Ma­nu­al. A.D.L. Ak­ker­man, J.D. van El­sas and F.J. de Brui­jn (eds.), Klu­wer Aca­de­mic Pu­blis­hers, Dor­drecht, Nether­lands. [internal download]
Amann, R. I.. 1995. In situ hy­bri­di­za­t­i­on with rRNA-tar­ge­ted pro­bes as a tool to stu­dy the com­po­si­ton and dy­na­mics of mi­cro­bi­al com­mu­nities, p. 92. In: Bei­je­rinck Cen­ten­ni­al. Mi­cro­bi­al Phy­sio­lo­gy and Gene Re­gu­la­ti­on: Emer­ging Prin­ci­ples and Ap­p­li­ca­ti­ons. W.A. Schef­fers and J.P. van Di­jken (Eds.), Delft Uni­ver­si­ty Press, The Nether­lands. [internal download]
Stahl, D. A., R. I. Amann, L. K. Poulsen, L. Raskin, and W. C. Capman. 1995. Use of fluo­re­scent pro­bes for de­ter­mi­na­ti­ve mi­cro­sco­py of me­tha­no­ge­nic ar­chaea, p. 111-121. In: Ar­chaea: a la­bo­ra­to­ry ma­nu­al, Vol. 2, Me­tha­no­gens. K.R. So­wers & H.J. Schrei­er (Eds.), Cold Spring Har­bor Press, Cold Spring Har­bor, USA. [internal download]
Wedi, D., M. Wagner, R. Amann, R. Erhart, H. Lemmer, and P. A. Wilderer. 1995. In situ-Nach­weis der un­ter­ge­ord­ne­ten Rol­le von Bak­te­ri­en der Gat­tung Acinetobacter bei der er­höh­ten bio­lo­gi­schen P-Eli­mi­na­ti­on. GWF Was­ser Ab­was­ser 136:17-23. [internal download]

 

1994

Szewzyk, U., W. Manz, R. Amann, K.-H. Schleifer, and T.-A. Stenström. 1994. Growth and in situ de­tec­tion of a pa­tho­ge­nic Escherichia coli in bio­films of a he­te­ro­tro­phic wa­ter­bac­te­ri­um by use of 16S- and 23S-rRNA-di­rec­ted fluo­re­scent oli­go­nu­cleo­ti­de pro­bes. FEMS Mi­cro­bi­ol. Ecol. 13:169-176. [sciencedirect page] [internal download]
Wagner, M., R. Erhart, W. Manz, R. Amann, H. Lemmer, D. Wedi, and K. H. Schleifer. 1994. De­ve­lop­ment of an rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­be spe­ci­fic for the ge­nus Acinetobacter and its ap­p­li­ca­ti­on for in situ mo­ni­to­ring in ac­tiva­ted sludge. Appl. En­vi­ron. Mi­cro­bi­ol. 60:792-800. [ncbi page] [download pdf]
Aznar, R., W. Ludwig, R. I. Amann, and K.-H. Schleifer. 1994. Se­quence de­ter­mi­na­ti­on of rRNA ge­nes of pa­tho­ge­nic Vibrio spe­cies and who­le-cell iden­ti­fi­ca­ti­on of Vibrio vulnificus with rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Int. J. Syst. Bac­te­ri­ol. 44:330-337. [ncbi page] [internal download]
Manz, W., M. Wagner, R. Amann, and K. H. Schleifer. 1994. In situ cha­rac­te­riza­t­i­on of the mi­cro­bi­al con­sor­tia ac­tive in two was­te­wa­ter tre­at­ment plants. Wat. Res. 28:1715-1723. [sciencedirect page] [internal download]
Burggraf, S., T. Mayer, R. Amann, S. Schadhauser, C. R. Woese, and K. O. Stetter. 1994. Iden­ti­fy­ing mem­bers of the do­main Archaea with rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 60:3112-3119. [ncbi page] [download pdf]
Trebesius, K., R. Amann, W. Ludwig, K. Mühlegger, and K. H. Schleifer. 1994. Iden­ti­fi­ca­ti­on of who­le fi­xed bac­te­ri­al cells with non­ra­dioac­tive 23S rRNA-tar­ge­ted po­ly­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 60:3228-3235. [ncbi page] [download pdf]
Wagner, M., R. Amann, H. Lemmer, W. Manz, and K. H. Schleifer. 1994. Pro­bing ac­tiva­ted sludge with fluo­re­scent­ly la­be­led rRNA tar­ge­ted oli­go­nu­cleo­ti­des. Wat. Sci. Tech. 29:15-23. [wst page] [internal download]
Roller, C., M. Wagner, R. Amann, W. Ludwig, and K.-H. Schleifer. 1994. In situ pro­bing of Gram-po­si­ti­ve bac­te­ria with high DNA G+C con­tent using 23S rRNA-tar­ge­ted oli­go­nu­cleo­ti­des. Mi­cro­bi­ol. 140:2849-2858. [ncbi page] [internal download]
Lin, C., B. Flesher, W. C. Capman, R. I. Amann, and D. A. Stahl. 1994. Ta­xon-spe­ci­fic hy­bri­di­za­t­i­on pro­bes for fi­ber-di­gesting bac­te­ria sug­gest no­vel gut-as­so­cia­ted Fibrobacter. Syst. Appl. Mi­cro­bi­ol. 17:418-424. [sciencedirect page] [internal download]
Lloyd, D., J. Ralphs, L. Durrant, A.G. Williams, and R. Amann. 1994. Stu­dies of the bac­te­ri­al en­do­sym­bi­onts of "an­ae­ro­bic pro­to­zoa" using fluo­re­scent­ly-la­bel­led rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Bio­chem. Soc. Trans. 22:323S. [ncbi page] [internal download]
Wagner, M., R. Amann, P. Kämpfer, B. Assmus, A. Hartmann, P. Hutzler, N. Springer, and K. H. Schleifer. 1994. Iden­ti­fi­ca­ti­on and in situ de­tec­tion of gram-ne­ga­ti­ve fil­amen­tous bac­te­ria in ac­tiva­ted sludge. Syst. Appl. Mi­cro­bi­ol. 17:405-417. [sciencedirect page] [internal download]
Polz, M. F., D. L. Distel, B. Zarda, R. Amann, H. Felbeck, J. A. Ott, and C. M. Cavanaugh. 1994. Phy­lo­ge­ne­tic ana­ly­sis of a high­ly spe­ci­fic as­so­cia­ti­on bet­ween ec­to­sym­bio­tic, sul­fur oxi­di­zing bac­te­ria and a ma­ri­ne ne­ma­to­de. Appl. En­vi­ron. Mi­cro­bi­ol. 60:4461-4467. [ncbi page] [download pdf]
Wagner, M., B. Aßmus, A. Hartmann, P. Hutzler, and R. Amann. 1994. In situ ana­ly­sis of mi­cro­bi­al con­sor­tia in ac­tiva­ted sludge using fluo­re­scent­ly la­bel­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes and con­fo­cal scan­ning la­ser mi­cro­sco­py. J. Mi­cro­sco­py 176:181-187. [ncbi page] [internal download]
Spring, S., R. Amann, W. Ludwig, K.-H. Schleifer, D. Schüler, K. Poralla, and N. Petersen. 1994. Phy­lo­ge­ne­tic ana­ly­sis of un­cul­tu­red ma­gne­tot­ac­tic bac­te­ria from the al­pha­sub­class of Proteobacteria. Syst. Appl. Mi­cro­bi­ol. 17:501-508. [sciencedirect page] [internal download]
Rossello-Mora, R. A., F. Caccavo, Jr., K. Osterlehner, N. Springer, S. Spring, D. Schüler, W. Ludwig, R. Amann, M. Vanncanneyt and K. H. Schleifer. 1994. Iso­la­ti­on and ta­xo­no­mic cha­rac­te­riza­t­i­on of a ha­lo­to­le­rant, fa­cul­ta­tive­ly iron-re­du­cing bac­te­ri­um. Syst. Appl. Mi­cro­bi­ol. 17:569-573. [sciencedirect page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., B. Zarda, K. H. Trebesius, W. Ludwig, and K. H. Schleifer. 1994. Ra­pid iden­ti­fi­ca­ti­on and in situ de­tec­tion of mi­cro­or­ga­nisms using fluo­re­scent rRNA-tar­ge­ted oli­go­nu­cleo­ti­des, p. 237-244. In: Ra­pid Me­thods and Au­to­ma­ti­on in Mi­cro­bio­lo­gy and Im­mu­no­lo­gy. R.C. Spen­cer, E.P. Wright and S.W.B. New­som (Eds.), In­ter­cept Ltd., An­do­ver, UK.
Amann, R., and W. Ludwig. 1994. Typ­ing in situ with Pro­bes, pp. 115-135. In: Bac­te­ri­al Di­ver­si­ty and Sys­te­ma­tics. F.G. Priest, A. Ra­mos-Cor­menza­na, and B.J. Tindall (Eds.), Ple­num, New York, USA. [internal download]
Amann, R., W. Ludwig, and K. H. Schleifer. 1994. Iden­ti­fi­ca­ti­on of non­cul­tura­ble bac­te­ria: a chal­len­ging task for the mole­cu­lar ta­xo­no­mist. ASM News 60:360-365.
Hahn, D., R. Amann, and J. Zeyer. 1994. Oli­go­nu­cleo­ti­de pro­bes for the de­tec­tion and iden­ti­fi­ca­ti­on of bac­te­ria, p. 163-171. In: Im­pro­ving plant pro­duc­tivi­ty with rhi­zo­s­phe­re bac­te­ria. M.H. Ry­der, P.M. Ste­phens, and G.D. Bo­wen (Eds.), CSI­RO, Aus­tra­lia.
Ludwig, W., and R. Amann. 1994. De­sign and ap­p­li­ca­ti­on of rRNA-tar­ge­ted spe­ci­fic hy­bri­di­za­t­i­on pro­bes. Soils News­let­ter 17:16.

 

1993

Wallner, G., R. Amann, and W. Beisker. 1993. Op­ti­mi­zing fluo­re­scent in situ hy­bri­di­za­t­i­on with rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes for flow cy­to­metric iden­ti­fi­ca­ti­on of mi­cro­or­ga­nisms. Cy­to­metry 14:136-143. [ncbi page] [internal download]
Wagner, M., R. Amann, H. Lemmer, and K. H. Schleifer. 1993. Pro­bing ac­tiva­ted sludge with oli­go­nu­cleo­ti­des spe­ci­fic for pro­te­ob­ac­te­ria: ina­de­quacy of cul­tu­re-de­pen­dent me­thods for de­scri­bing mi­cro­bi­al com­mu­ni­ty struc­tu­re. Appl. En­vi­ron. Mi­cro­bi­ol. 59:1520-1525. [ncbi page] [download pdf]
Hahn, D., R. I. Amann, and J. Zeyer. 1993. Who­le cell hy­bri­di­za­t­i­on of Frankia strains with fluo­re­scence- or di­go­xi­ge­nin-la­be­led, 16S rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 59:1709-1716. [ncbi page] [download pdf]
Manz, W., U. Szewzyk, P. Eriksson, R. Amann, K. H. Schleifer, and T.-A. Stenström. 1993. In situ iden­ti­fi­ca­ti­on of bac­te­ria in drin­king wa­ter and ad­joi­ning bio­films by hy­bri­di­za­t­i­on with 16S and 23S rRNA-di­rec­ted fluo­re­scent oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 59:2293-2298. [ncbi page] [download pdf]
Spring, S., R. Amann, W. Ludwig, K. H. Schleifer, H. van Gemerden, and N. Petersen. 1993. Do­mi­na­ting role of an unusu­al ma­gne­tot­ac­tic bac­te­ri­um in the mi­cro­aero­phi­lic zone of a freshwa­ter se­di­ment. Appl. En­vi­ron. Mi­cro­bi­ol. 59:2397-2403. [ncbi page] [download pdf]
Beimfohr, C., A. Krause, R. Amann, W. Ludwig, and K. H. Schleifer. 1993. In situ iden­ti­fi­ca­ti­on of lac­to­coc­ci, en­te­ro­coc­ci and strep­to­coc­ci. Syst. Appl. Mi­cro­bi­ol. 16:450-456. [sciencedirect page] [internal download]
Hahn, D., R. I. Amann, and J. Zeyer. 1993. De­tec­tion of mRNA in Streptomyces cells by in situ hy­bri­di­za­t­i­on with di­go­xi­ge­nin-la­be­led pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 59:2753-2757. [ncbi page] [download pdf]
Springer, N., W. Ludwig, R. Amann, H. J. Schmidt, H.-D. Görtz, and K.-H. Schleifer. 1993. Oc­cur­rence of frag­men­ted 16S rRNA in an ob­li­ga­te bac­te­ri­al en­do­sym­bi­ont of Paramecium caudatum. Proc. Natl. Acad. Sci. USA 90:9892-9895. [ncbi page] [download pdf]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Schleifer, K. H., W. Ludwig, and R. I. Amann. 1993. Nu­cleic acid pro­bes, p. 463-510. In: Hand­book of New Bac­te­ri­al Sys­te­ma­tics. M. Good­fel­low and A.G. O'Don­nell (Eds.), Aca­de­mic Press Li­mi­ted, Lon­don, Eng­land. [internal download]
Ludwig, W., and R. Amann. 1993. The rRNA ap­proach: re­con­struc­tion of bac­te­ri­al phy­lo­ge­nies, de­sign and ap­p­li­ca­ti­on of spe­ci­fic pro­bes. Soils News­let­ter 16:10-11. [internal download]
Amann, R. I., W. Ludwig, W. Manz, S. Spring, N. Springer, M. Wagner, and K. H. Schleifer. 1993. In situ iden­ti­fi­ca­ti­on of non­cul­tura­ble bac­te­ria with rRNA-tar­ge­ted nu­cleic acid pro­bes, p. 515-520. In: Trends in Mi­cro­bi­al Eco­lo­gy. R. Gu­er­re­ro & C. Pe­dros-Alio (Eds.), Spa­nish So­cie­ty for Mi­cro­bio­lo­gy, Bar­ce­lo­na, Spain. [internal download]
Wagner, M., R. Erhart, D. Wedi, and R. Amann. 1993. In-situ-Nach­weis der un­ter­gord­ne­ten Rol­le von Acinetobacter in Klär­an­la­gen mit bio­lo­gisch er­höh­ter Phos­phateli­mi­nie­rung, p. 91-100. In: Wech­sel­wir­kun­gen der bio­lo­gi­schen und che­mi­schen Phos­pho­reli­mi­na­ti­on. H.H. Hahn & R. Trauth (Eds.), Ver­öff. Inst. Sied­lungs­was­ser­bau Uni­ver­si­tät Karls­ru­he, Band 68. [internal download]

 

1992

Amann, R. I., C. Lin, R. Key, L. Montgomery, and D. A. Stahl. 1992. Di­ver­si­ty among Fibrobacter isolates: towards a phy­lo­ge­ne­tic and ha­bi­tat-ba­sed clas­si­fi­ca­ti­on. Syst. Appl. Mi­cro­bi­ol. 15:23-3. [sciencedirect page] [internal download]
Spring, S., R. Amann, W. Ludwig, K.-H. Schleifer, and N. Petersen. 1992. Phy­lo­ge­ne­tic di­ver­si­ty and iden­ti­fi­ca­ti­on of non­cul­tura­ble ma­gne­tot­ac­tic bac­te­ria. Syst. Appl. Mi­cro­bi­ol. 15:116-122. [sciencedirect page] [internal download]
Amann, R. I., J. Stromley, R. Devereux, R. Key, and D. A. Stahl. 1992. Mole­cu­lar and mi­cro­sco­pic iden­ti­fi­ca­ti­on of sul­fa­te-re­du­cing bac­te­ria in mul­tis­pe­cies bio­films. Appl. En­vi­ron. Mi­cro­bi­ol. 58:614-623. [ncbi page] [download pdf]
Hahn, D., R. I. Amann, W. Ludwig, A. D. L. Akkermans, and K.-H. Schleifer. 1992. De­tec­tion of mi­cro-or­ga­nisms in soil af­ter in situ hy­bri­di­za­t­i­on with rRNA-tar­ge­ted, fluo­re­scent­ly la­bel­led oli­go­nu­cleo­ti­des. J. Gen. Mi­cro­bi­ol. 138:879-887. [ncbi page] [internal download]
Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Gen­son­den und ihre An­wen­dung in der Mi­kro­bio­lo­gie. Na­tur­wis­sen­schaf­ten 79:213-219. [ncbi page] [internal download]
Hicks, R. E., R. I. Amann, and D. A. Stahl. 1992. Dual stai­ning of na­tu­ral bac­te­rio­plank­ton with 4',6-dia­mi­di­no-2-phe­ny­lin­do­le and fluo­re­scent oli­go­nu­cleo­ti­de pro­bes tar­ge­ting king­dom­le­vel 16S rRNA se­quen­ces. Appl. En­vi­ron. Mi­cro­bi­ol. 58:2158-2163. [ncbi page] [download pdf]
Amann, R. I., B. Zarda, D. A. Stahl, and K. H. Schleifer. 1992. Iden­ti­fi­ca­ti­on of in­di­vi­du­al pro­ka­ryo­tic cells with en­zy­me-la­be­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes. Appl. En­vi­ron. Mi­cro­bi­ol. 58:3007-3011. [ncbi page] [download pdf]
Springer, N., W. Ludwig, V. Drozanski, R. Amann, and K.-H. Schleifer. 1992. The phy­lo­ge­ne­tic sta­tus of Sarcobium lyticum, an ob­li­ga­te in­tra­cel­lu­lar bac­te­ri­al pa­ra­si­te of small amoeba. FEMS Mi­cro­bi­ol. Lett. 96:199-202. [ncbi page] [internal download]
Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phy­lo­ge­ne­tic oli­go­de­oxy­nu­cleo­ti­de pro­bes for the ma­jor sub­clas­ses of pro­te­ob­ac­te­ria: pro­blems and so­lu­ti­ons. Syst. Appl. Mi­cro­bi­ol. 15:593-600. [sciencedirect page] [internal download]
Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Ri­bo­so­mal ri­bo­nu­cleic acid se­quence ana­ly­sis and hy­bri­di­za­t­i­on tech­no­lo­gy in the iden­ti­fi­ca­ti­on of mi­cro­or­gan­sims. Fre­se­ni­us J. Anal. Chem. 343:47. [springerlink page] [internal download]
Amann, R., W. Ludwig, and K. H. Schleifer. 1992. Iden­ti­fi­ca­ti­on and in situ de­tec­tion of in­di­vi­du­al bac­te­ri­al cells. FEMS Mi­cro­bi­ol. Lett. 100:45-50. [sciencedirect page] [internal download]

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Amann, R., and W. Ludwig. 1992. Un­be­kann­tem Le­ben auf der Spur: Stam­mes­ge­schicht­li­che Ein­ord­nung und Iden­ti­fi­zie­rung von nicht­kul­ti­vier­ba­ren Bak­te­ri­en. Na­tur­wis­sen­li­che Rund­schau 45:348-351. [internal download]
Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Ein­blick in eine ver­bor­ge­ne Welt. In: TUM For­schung für Bay­ern 3:8-9. Tech­ni­sche Uni­ver­si­tät Mün­chen. [internal download]
Schleifer, K .H., R. Amann, W. Ludwig, C. Rothemund, N. Springer, and S. Dorn. 1992. Nu­cleic acid pro­bes for the iden­ti­fi­ca­ti­on and in situ de­tec­tion of pseu­do­mo­nads, p. 127-134. In: Pseu­do­mo­nas: Mole­cu­lar Bio­lo­gy and Bio­tech­no­lo­gy. E. Gal­li, S. Sil­ver and B. Wi­tholt (Eds.), Ame­ri­can So­cie­ty for Mi­cro­bio­lo­gy, Wa­shing­ton, DC. [internal download]

 

1991

Amann, R. I., N. Springer, W. Ludwig, H.-D. Görtz, and K.-H. Schleifer. 1991. Iden­ti­fi­ca­ti­on in situ and phy­lo­ge­ny of un­cul­tu­red bac­te­ri­al en­do­sym­bi­onts. Na­tu­re (Lon­don) 351:161-164. [ncbi page] [internal download]
Schleifer, K.-H., D. Schüler, S. Spring, M. Weizenegger, R. Amann, W. Ludwig, and M. Köhler. 1991. The ge­nus Magnetospirillum gen. nov.. De­scrip­ti­on of Magnetospirillum gryphiswaldense sp. nov. and trans­fer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov.. Syst. Appl. Mi­cro­bi­ol. 14:379-385. [sciencedirect page] [internal download]
Zarda, B., R. Amann, G. Wallner, and K. H. Schleifer. 1991. Iden­ti­fi­ca­ti­on of sin­gle bac­te­ri­al cells using di­go­xi­ge­nin-la­bel­led, rRNA-tar­ge­ted oli­go­nu­cleo­ti­des. J. Gen. Mi­cro­bi­ol. 137:2823-2830. [ncbi page] [internal download]

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Stahl, D. A., and R. Amann. 1991. De­ve­lop­ment and ap­p­li­ca­ti­on of nu­cleic acid pro­bes, p. 205-248. In: Nu­cleic Acid Tech­ni­ques in Bac­te­ri­al Sys­te­ma­tics. E. Sta­cke­brandt and M. Good­fel­low (Eds.), John Wi­ley and Sons, Chi­ches­ter, Eng­land. [internal download]
Schleifer, K. H., W. Ludwig, R. Amann, C. Hertel, M. Ehrmann, W. Köhler, and A. Krause. 1991. Phy­lo­ge­ne­tic re­la­ti­ons­hips of lac­tic acid bac­te­ria and their iden­ti­fi­ca­ti­on with nu­cleic acid pro­bes. p. 23-32 In: Ac­tes du col­lo­que LAC­TIC 91. G. No­vel and J.-F. Le Quer­ler (Eds.) Caen Uni­ver­si­ty Press, Caen, Fran­ce. [internal download]

1990

Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluo­re­scent-oli­go­nu­cleo­ti­de pro­bing of who­le cells for de­ter­mi­na­ti­ve, phy­lo­ge­ne­tic, and en­vi­ron­men­tal stu­dies in mi­cro­bio­lo­gy. J. Bac­te­ri­ol. 172:762-770. [ncbi page] [download pdf]
Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Com­bi­na­ti­on of 16S rRNA-tar­ge­ted oli­go­nu­cleo­ti­de pro­bes with flow cy­to­metry for ana­ly­zing mi­xed mi­cro­bi­al po­pu­la­ti­ons. Appl. En­vi­ron. Mi­cro­bi­ol. 56:1919-1925. [ncbi page] [download pdf]

1989

 

Buch­ka­pi­tel / Un­be­gut­ach­te­te Pu­bli­ka­tio­nen:

Stahl, D. A., R. Devereux, R. I. Amann, B. Flesher, C. Lin, and J. Stromley. 1989. Ri­bo­so­mal RNA ba­sed stu­dies of na­tu­ral mi­cro­bi­al di­ver­si­ty and eco­lo­gy, p. 669-673. In: Re­cent ad­van­ces in mi­cro­bi­al eco­lo­gy. T. Hat­to­ri, Y. Ishi­da, Y. Ma­ru­yama, R. Mo­ri­ta, and A. Uchi­da (Eds.), Ja­pan Sci­en­ti­fic So­cie­ties Press, To­kio, Ja­pan. [internal download]

1988

Amann, R., P. Sostak, W. Ludwig, and K.-H. Schleifer. 1988. Clo­n­ing and se­quen­cing of ge­nes en­co­ding the beta-sub­u­nits of ATP-syn­tha­ses from Enterobacter aerogenes and Flavobacterium ferrugineum. FEMS Mi­cro­bi­ol. Lett. 50:101-106. [sciencedirect page] [internal download]
Amann, R., W. Ludwig, and K.H. Schleifer. 1988. Beta-sub­u­nit of ATP-syn­tha­se: a use­ful mar­ker for stu­dy­ing the phy­lo­ge­ne­tic re­la­ti­ons­hip of eu­bac­te­ria. J. Gen. Mi­cro­bi­ol. 134:2815-2821. [ncbi page] [download pdf]
Amann, R., W. Ludwig, W. Laubinger, P. Dimroth, and K. H. Schleifer. 1988. Clo­n­ing and se­quen­cing of the gene en­co­ding the beta-sub­u­nit of the so­di­um ion trans­lo­ca­ting AT­Psyn­tha­se of Propionigenium modestum. FEMS Mi­cro­bi­ol. Lett. 56:253-259. [sciencedirect page] [internal download]
Amann, R. I. 1988. Die beta-Un­ter­ein­heit der ATP-Syn­tha­se als phy­lo­ge­ne­ti­scher Mar­ker bei den Eu­bak­te­ri­en. Dis­ser­ta­ti­on. Tech­ni­sche Uni­ver­si­tät Mün­chen. [internal download]

 

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