Seitenpfad:
- Abteilungen
- Ehemalige Abteilung Mikrobiologie
- Publikationen der Abteilung Mikrobiologie
Publikationen der Abteilung Mikrobiologie
| 2016 | Žure, M., A. Fernandez-Guerra, C.B. Munn and J. Harder (2016) Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments. ISME J. 2016 Nov 1. doi: 10.1038/ismej.2016.123. [Epub ahead of print] |
| Weidenweber, S., R. Marmulla, U. Ermler and J. Harder (2016) X-ray structure of linalool dehydratase/isomerase from Castellaniella defragrans reveals enzymatic alkene synthesis. FEBS Letters 590, 1375-1383, doi: 10.1002/1873-3468.12165 |
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| Strijkstra A, Trautwein K, Roesler S, Feenders C, Danzer D, Riemenschneider U, Blasius B, Rabus R. (2016) High performance CCD camera system for digitalisation of 2D DIGE gels. Proteomics 16:1975-1979. |
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| Panschin, I., M. Becher, S. Verbarg, C. Spröer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, R.L. Hahnke (2016) Description of Gramella forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011. Int J Syst Evol Microbiol. 2016 Nov 28. doi: 10.1099/ijsem.0.001700. [Epub ahead of print] |
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| Marmulla, R., B. Šafarić, S. Markert, T. Schweder and J. Harder (2016) Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol. BMC Biochemistry 17, 6, doi: 10.1186/s12858-016-0062-0 |
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| Marmulla, R., E.P. Cala, S. Markert, T. Schweder and J. Harder (2016) The anaerobic linalool metabolism in Thauera linaloolentis 47Lol. BMC Microbiology 16,76, doi: 10.1186/s12866-016-0693-8. |
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| Laso-Pérez, R., G. Wegener, K. Knittel, F. Widdel, K.J. Harding, V. Krukenberg, D.V. Meier, M. Richter, H.E. Tegetmeyer, D. Riedel, H.H. Richnow, L. Adrian, T. Reemtsma, O.J. Lechtenfeld, and F. Musat (2016) Thermophilic archaea activate butane via alkyl-coenzyme M formation. Nature 539, 396-401. |
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| Dörries M, Wöhlbrand L, Kube M, Reinhardt R, Rabus R. (2016) Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059. BMC Genomics 17:918. |
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| Dörries M, Wöhlbrand L, Rabus R. (2016) Differential proteomic analysis of the metabolic network of the marine sulfate-reducer Desulfobacterium autotrophicum HRM2. Proteomics 16:2878-2893. |
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| Avci, B., R.L. Hahnke, M. Chafee, T. Fischer, H. Gruber-Vodicka, H.E. Tegetmeyer, J. Harder, B.M. Fuchs, R.I. Amann and H. Teeling (2016) Genomic and physiological analyses of ‘Reinekea forsetii’ reveal a versatile opportunistic lifestyle during spring algae blooms. Environmental Microbiology, in press |
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| 2015 | Žure, M., C.B. Munn, and J. Harder (2015) Diversity of Rhodopirellula and related planctomycetes in a North Sea coastal sediment employing carB as molecular marker. FEMS Microbiol Lett 362, fnv127. |
| Xing, P., R. L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbeyron, J. Harder, D. Becher, T. Schweder, F.O. Glöckner, R.I. Amann and H. Teeling (2015) Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom. ISME Journal 9, 1410-22, doi: 10.1038/ismej.2014.225 |
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| Rabus, R., S.S. Venceslau, L. Wöhlbrand, G. Voordouw, J.D. Wall, I.A. Pereira (2015) A post-genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes. Adv Microb Physiol 66, 55-321. |
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| Kizina, J., M. Žure, E. Rhiel, C.B. Munn, M. Richter, J. Harder (2015) Permanent draft genome of ´Rhodopirellula islandica´strain K833. Marine Genomics 24, 249-251, doi:10.1016/j.margen.2015.07.011 |
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| Kleiner, M., C. Wentrup, T. Holler, G. Lavik, J. Harder, C. Lott, S. Littmann, M.M.M. Kuypers and N. Dubilier (2015) Use of carbon monoxide and hydrogen by a bacteria–animal symbiosis from seagrass sediments. Environmental Microbiology 17, 5023-35, doi:10.1111/1462-2920.12912 |
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| Jarling R, Kühner S, Basílio Janke E, Gruner A, Drozdowska M, Golding BT, Rabus R, Wilkes H. (2015) Versatile transformations of hydrocarbons in anaerobic bacteria: substrate ranges and regio- and stereo-chemistry of activation reactions. Front Microbiol 6:880. |
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| Hahnke, R.L., C.M. Bennke, B.M. Fuchs, A.J. Mann, E. Rhiel, H. Teeling, R.I. Amann and J. Harder (2015) Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea. Environmental Microbiology 17, 3515-3526, doi: 10.1111/1462-2920.12479 |
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| Büsing I, Kant M, Dörries M, Wöhlbrand L, Rabus R. (2015b) The predicted σ(54)-dependent regulator EtpR is essential for expression of genes for anaerobic p-ethylphenol and p-hydroxyacetophenone degradation in "Aromatoleum aromaticum" EbN1. BMC Microbiol 15:251. |
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| Büsing I, Höffken W, Breuer M, Wöhlbrand L, Hauer B, Rabus R. (2015a) Molecular genetic and crystal structural analysis of 1-(4-hydroxyphenyl)-ethanol dehydrogenase from "Aromatoleum aromaticum" EbN1. J Mol Microbiol Biotechnol 25:327-339. |
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| Beese-Vasbender, P.F., J.P. Grote, J. Garrelfs, M. Stratmann and K.J. Mayrhofer (2015) Selective microbial electrosynthesis of methane by a pure culture of a marine lithoautotrophic archaeon. Bioelectrochemistry 102, 50-55. |
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| 2014 | Wiegmann K, Hensler M, Wöhlbrand L, Ulbrich M, Schomburg D, Rabus R. (2014) Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, member of the marine Roseobacter clade. Appl Environ Microbiol 80:4725-4737. |
| Wegner, C.-E., M. Richter, T. Richter-Heitmann, A. Klindworth, C.S. Frank, F.O. Glöckner, and J. Harder (2014) Permanent draft genome of Rhodopirellula sallentina SM41. Marine Genomics 13, 17-18. |
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| Strijkstra A, Trautwein K, Jarling R, Wöhlbrand L, Dörries M, Reinhardt R, Drozdowska M, Golding BT, Wilkes H, Rabus R. (2014) Anaerobic activation of p-cymene in denitrifying Betaproteobacteria: methyl group hydroxylation versus addition to fumarate. Appl Environ Microbiol 80:7592-7603. |
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| Richter-Heitmann, T., M. Richter, A. Klindworth, C.-E. Wegner, C.S. Frank, F.O. Glöckner, and J. Harder (2014) Permanent draft genomes of the two Rhodopirellula europaea strains 6C and SH398. Marine Genomics 13,15-16. |
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| Richter, M., T. Richter-Heitmann, A. Klindworth, C.-E. Wegner, C.S. Frank, J. Harder, and F.O. Glöckner (2014) Permanent draft genomes of the three Rhodopirellula baltica strains SH28, SWK14 and WH47. Marine Genomics 13, 13-14. |
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| Richter, M., T. Richter-Heitmann, A. Klindworth, C.-E. Wegner, C.S. Frank, J. Harder, and F.O. Glöckner (2014) Permanent draft genomes of the Rhodopirellula maiorica strain SM1. Marine Genomics 13, 19-20. |
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| Petasch, J., E.M. Disch, S. Markert, D. Becher, T. Schweder, B. Hüttel, R. Reinhardt and J. Harder (2014) The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen. BMC Microbiology 14, 164, doi: 10.1186/1471-2180-14-164 |
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| Marmulla R., and J. Harder (2014) Microbial monoterpene transformations - a review. Frontiers in Microbiology 5:346. doi: 10.3389/fmicb.2014.00346 |
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| Lahme S, Trautwein K, Strijkstra A, Dörries M, Wöhlbrand L, Rabus R. (2014) Benzoate mediates the simultaneous repression of anaerobic 4-methylbenzoate and succinate utilization in Magnetospillum sp. strain pMbN1. BMC Microbiology 14:269. |
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| Klindworth, A., M. Richter, T. Richter-Heitmann, C.-E. Wegner, C.S. Frank, F.O. Glöckner, and J. Harder (2014) Permanent draft genome of Rhodopirellula rubra SWK7. Marine Genomics 13, 11-12. |
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| Farnelid, H., J. Harder, M. Bentzon-Tilia, L. Riemann (2014) Isolation of heterotrophic diazotrophic bacteria from estuarine surface waters. Environmental Microbiology 16, 3072-3082, DOI:10.1111/1462-2920.12335 |
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| Drüppel K, Hensler M, Trautwein K, Koßmehl S, Wöhlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Göker M, Klenk HP, Schomburg D, Rabus R. (2014) Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade). Environ Microbiol 16:218-238 |
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| Bondoso, J., L. Albuquerque, A. Lobo-da-Cunha, M.S. da Costa, J. Harder and O.M. Lage (2014) Rhodopirellula lusitana sp. nov. and Rhodopirellula rubra sp. nov., isolated from the surface of macroalgae. Systematic and Applied Microbiology 37, 157-164, doi: 10.1016/j.syapm.2013.11.004 |
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| Ameryk, A., R.L. Hahnke, , S. Gromisz, J. Kownacka, M. Zalewski, L. Szymanek, J. Całkiewicz, J. Dunalska and J. Harder (2014) Bacterial community structure influenced by Coscinodiscus sp. in the Vistula river plume. Oceanologia 56, 825–856. |
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| Rabus, R, K. Trautwein, and L. Wöhlbrand (2014) Towards habitat-oriented systems biology of “Aromatoleum aromaticum” EbN1. Chemical sensing, catabolic network modulation and growth control in anaerobic aromatic compound degradation. Appl. Microbiol. Biotechnol, in press. |
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| Jaekel, U., C. Vogt, A. Fischer, H.H. Richnow, and F. Musat (2014) Carbon and hydrogen stable isotope fractionation associated with the anaerobic degradation of propane and butane by marine sulfate-reducing bacteria. Environ. Microbiol. 16, 130–140 |
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| Enning, D., and J. Garrelfs (2014) Corrosion of iron by sulfate-reducing bacteria: New views of an old problem. Appl. Environ. Microbiol. 80, 1226–1236. |
| 2013 |
Zech, H., M. Hensler, S. Koßmehl, K. Drüppel, L. Wöhlbrand, K. Trautwein, R. Hulsch, U. Maschmann, T. Colby, J. Schmidt, R. Reinhardt, K. Schmidt-Hohagen, D. Schomburg, and R. Rabus (2013) |
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Wöhlbrand, L., K. Trautwein, and R. Rabus (2013) |
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| Wegner, C.-E., T. Richter-Heitmann, A. Klindworth, C. Klockow, M. Richter, T. Achstetter, F.O. Glöckner, and J. Harder (2013) Expression of sulfatases in Rhodopirellula baltica and the diversity of sulfatases in the genus Rhodopirellula. Marine Genomics 9, 51–61. |
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| Spring, S., T. Riedel, C. Spröer, S. Yan, J. Harder, and B.M. Fuchs (2013) Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine Gammaproteobacteria: Description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans. BMC Microbiol.13, 118. |
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| Rabus R. (2013) Editorial – Environmental microbial proteomics: new avenues for a molecular understanding of the functional role of microorganisms in the natural environment. Proteomics 13, 2697–2699. |
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| Milucka, J., F. Widdel, and S. Shima (2013) Immunological detection of enzymes for sulfate reduction in anaerobic methane-oxidizing consortia. Environ. Microbiol. 15, 1561–1571. |
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| Mann, A.J., R.L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F.O. Glöckner, R.I. Amann, and H. Teeling (2013) The genome of the algae-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Appl. Environ. Microbiol. 79, 6813–6822. |
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| Koßmehl, S., L. Wöhlbrand, K. Drüppel, C. Feenders, B. Blasius, and R. Rabus (2013) Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395. Proteomics 13, 2743–2760. |
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| Hahnke, R.L., C. Probian, B.M. Fuchs, and J. Harder (2013) Variations in pelagic bacterial communities in the North Atlantic Ocean coincide with water bodies. Aquatic Microbial Ecol. 71, 131–140. |
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| Hahnke, R.L., and J. Harder (2013) Phylogenetic diversity of Flavobacteria isolated from the North Sea on solid media. Systematic and Applied Microbiology 36, 497–504. | |
| Frank, C.S.,C. Klockow, M. Richter, F.O. Glöckner, and J. Harder (2013) Genetic diversity of Rhodopirellula strains. Antonie van Leeuwenhoek 104, 547–550. |
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| Ebert, M., S. Laaß, M. Burghartz, J. Petersen, S. Koßmehl, L. Wöhlbrand, R. Rabus, C. Wittmann, P. Tielen, and D. Jahn (2013) Transposon mutagenesis identified chromosomal and plasmid genes essential for adaptation of the marine bacterium Dinoroseobacter shibae to anaerobic conditions. J Bacteriol 195:4769–4777. |
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| Drüppel, K., M. Hensler, K. Trautwein, S. Koßmehl, L. Wöhlbrand, K. Schmidt-Hohagen, M. Ulbrich, N. Bergen, J.P. Meier-Kolthoff, M. Göker, H.P. Klenk, D. Schomburg, and R. Rabus (2013) Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade). Environ. Microbiol. doi: 10.1111/1462-2920.12276. |
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| Bondoso, J., J. Harder, and O.M. Lage (2013) rpoB gene as a novel marker to infer phylogeny in Planctomycetales. Antonie van Leeuwenhoek 104, 477–488. |
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| 2012 | Wolfsheimer, S., A. Hartmann, R. Rabus, and G. Nuel (2012) Computing posterior probabilities for score-based alignments using ppALIGN. Stat. Appl. Gene. Mol. Biol. 11, Article 1. doi: 10.1515/1544–6115.1702 |
| Steinbach, A., S. Fraas, J. Harder, E. Warkentin, P. Kroneck, and U. Ermler (2012) Crystal structure of a ring-cleaving cyclohexane-1,2-dione hydrolase, a novel member of the thiamine diphosphate enzyme family. FEBS J. 279, 1209–1219. |
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| Lüddeke, F., A. Wülfing, M. Timke, F. Germer, J. Weber, A. Dikfidan, T. Rahnfeld, D. Linder, A. Meyerdierks, and J. Harder (2012) Geraniol and geranial dehydrogenases induced in anaerobic monoterpene degradation by Castellaniella defragrans. Applied Environmental Microbiology 78, 2128–2136. |
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| Lüddeke, F., A. Dikfidan, and J. Harder (2012) Physiology of deletion mutants in the anaerobic β-myrcene degradation pathway in Castellaniella defragrans. BMC Microbiol. 12, 192. |
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| Lenk, S., C. Moraru, S. Hahnke, J. Arnds, M. Richter, M. Kube, R. Reinhardt, T. Brinkhoff, J. Harder, R. Amann, and M. Mußmann (2012) Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME J. 6, 2178–2187. |
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| Harder, J. (2012) Vielfalt der marinen Mikroorganismen. In: E. Beck . Hrsg. Die Vielfalt des Lebens. Wiley-VCH, Weinheim. |
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| Halder T, and R. Rabus (2012) Dynamik kataboler Netzwerke in Umweltbakterien. Anpassung an wechselnde Umwelt (Nährstoff)bedingungen entschlüsselt durch quantitative Massenspektrometrie. Systembiologie.de 4, 58–61. |
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| Alain, K., J. Harder, F. Widdel, and K. Zengler (2012) Anaerobic utilization of toluene by marine alpha- and gammaproteobacteria reducing nitrate. Microbiol. 158, 2946–2957. |
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| Enning D, Venzlaff H, Garrelfs J, Dinh HT, Meyer V, Mayrhofer K, Hassel AW, Stratmann M and Widdel F (2012) Marine sulfate-reducing bacteria cause serious corrosion of iron under electroconductive biogenic mineral crust. Environ Microbiol 14: 1772-1787 DOI: 10.1111/j.1462-2920.2012.02778.x |
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| Holler T, Wegener G, Niemann H, Deusner C, Ferdelman TG, Boetius A, Brunner B and Widdel F (2012) Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction. Proc Natl Acad Sci USA 108: E1484-E1490 DOI: 10.1073/pnas.1106032108 |
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| Jarling R, Sadeghi M, Drozdowska M, Lahme S, Buckel W, Rabus R, Widdel F, Golding BT and Wilkes H (2012) Stereochemical investigations reveal the mechanism of the bacterial activation of n-alkanes without oxygen. Angew Chem Int Ed Engl 51: 1334-1338 DOI: 10.1002/anie.201106055 |
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| Jaekel U, Musat N, Adam B, Kuypers M, Grundmann O and Musat F (2012) Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps. ISME J. doi: 10.1038/ismej (20129) |
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| Kube M, Mitrovic J, Duduk B, Rabus R and Seemüller E (2012) Current view on phytoplasma genomes and encoded metabolism. ScientificWorldJournal: 185942 DOI: 10.1100/2012/185942 |
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| Lahme S, Eberlein C, Jarling R, Kube M, Boll M, Wilkes H, Reinhardt R and Rabus R (2012) Anaerobic degradation of 4-methylbenzoate via a specific 4-methylbenzoyl-CoA pathway. Environ Microbiol 14: 1118-1132 DOI: 10.1111/j.1462-2920.2011.02693.x |
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| Milucka J, Ferdelman TG, Polerecky L, Franzke D, Wegener G, Schmid M, Lieberwirth I, Wagner M, Widdel F and Kuypers MM (2012) Zero-valent sulphur is a key intermediate in marine methane oxidation. Nature 491:541-546 DOI: 10.1038/nature11656 |
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| Milucka J, Widdel F and Shima S (2012) Immunological detection of enzymes for sulfate reduction in anaerobic methane-oxidizing consortia. Environ Microbiol. doi: 10.1111/1462-2920.12003 |
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| Rabus R (2012) An overview of 2D DIGE analysis of marine (environmental) bacteria. Methods Mol Biol 854: 355-372 DOI: 10.1007/978-1-61779-573-2_25 |
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| Rabus R, Jarling R, Lahme S, Kühner S, Heider J, Widdel F and Wilkes H (2012) Co-metabolic conversion of toluene in anaerobic n-alkane-degrading bacteria. Environ Microbiol 13: 2576-2586 DOI: 10.1111/j.1462-2920.2011.02529.x |
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| Trautwein K, Grundmann O, Wöhlbrand L, Eberlein C, Boll M and Rabus R (2012) Benzoate mediates repression of C4-dicarboxylate utilization in Aromatoleum aromaticum EbN1. J Bacteriol 194: 518-528 DOI: 10.1128/JB.05072-11 |
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| Trautwein K, Wilkes H and Rabus R (2012) Proteogenomic evidence for β-oxidation of plant-derived 3-phenylpropanoids in Aromatoleum aromaticum EbN1. Proteomics 12: 1402-1413 DOI: 10.1002/pmic.201100279 |
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| Venzlaff H, Enning D, Srinivasan J, Mayrhofer K, Hassel AW, Widdel F and Stratmann M (2012) Accelerated cathodic reaction in microbial corrosion of iron due to direct electron uptake by sulphate-reducing bacteria. Corros. Sci., doi: 10.1016/j.corsci.2012.09.006 |
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| Wöhlbrand L, Kube M, Mussmann M, Jarling R, Beck A, Amann R, Wilkes H, Reinhardt R and Rabus R (2012) Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium. Environ Microbiol. doi: 10.1111/j.1462-2920.2012.02885.x |
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| Zech H, Echtermeyer C, Wöhlbrand L, Blasius B and Rabus R (2012) Biological versus technical variability in 2-D DIGE experiments with environmental bacteria. Proteomics 11: 3380-3389. (Erratum: Proteomics, 2011, 11:3942) DOI: 10.1002/pmic.201100071 |
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| 2011 | Basen M, Krüger M, Milucka J, Kuever J, Kahnt J, Grundmann O, Meyerdierks A, Widdel F and Seigo Shima S (2011) Bacterial enzymes for dissimilatory sulfate reduction in a marine microbial mat (Black Sea) mediating anaerobic oxidation of methane. Environ. Microbiol., DOI: 10.1111/j.1462-2920.2011.02443.x |
| Frank C S, Langhammer P, Fuchs B M and Harder J (2011) Ammonia and attachment of Rhodopirellula baltica. Archives of Microbiology 193: 365−372 DOI: 10.1007/s00203-011-0681-1 |
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| Holler T, Widdel F, Knittel K, Amann R, Kellermann M Y, Hinrichs K-U, Teske A , Boetius A and Wegener G (2011) Thermophilic anaerobic oxidation of methane by marine microbial consortia ISME J. 5, 1946–1956 DOI: 10.1038/ismej.2011.77 |
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| Jarling R, Sadeghi M, Drozdowska M, Lahme S, Buckel W, Rabus R, Widdel F, Golding B T and Wilkes H (2011) Stereochemical investigations reveal the mechanism of the bacterial activation of n-alkanes without oxygen. Angew Chem Int Ed, DOI: 10.1002/anie.201106055 |
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| Lahme S, Harder J and Rabus R (2011) Anaerobic degradation of 4-methylbenzoate by a new denitrifying bacterium, strain pMbN1. Appl. Environ. Microbiol., DOI: 10.1128/AEM.06552-11 |
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| Lüddeke F and Harder J (2011) Enantiospecific (S)-(+)-linalool formation from β-myrcene by linalool dehydratase-isomerase. Z. Naturforsch. 66c, 409−412 |
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| Rabus R, Jarling R, Lahme S, Kühner S, Heider J, Widdel F and Wilkes H (2011) Co-metabolic conversion of toluene in anaerobic n-alkane-degrading bacteria. Environ. Microbiol. 13, 2576−2586 DOI: 10.1111/j.1462-2920.2011.02529.x |
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| Rotaru A-E, Schauer R, Probian C, Mußmann M and Harder J (2011) Visualization of candidate division OP3 cocci in limonene degrading methanogenic cultures. J. Microbiol. Biotechnol. 22, 457–461 DOI: 10.4014/jmb.1110.10055 |
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| Steinbach A K, Fraas S, Harder J, Tabbert A, Brinkmann H, Meyer A, Ermler U and Kroneck P M H (2011) Cyclohexane-1,2-dione hydrolase from denitrifying Azoarcus sp. strain 22Lin, a novel member of the thiamine diphosphate enzyme family. J. Bacteriology 193, 6760-6769 DOI: 10.1128/JB.05348-11 |
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| Zech H, Echtermeyer C, Wöhlbrand L, Blasius B and Rabus R (2011) Biological versus technical variability in 2D DIGE experiments with environmental bacteria. Proteomics 11, 3380−3389 DOI: 10.1002/pmic.201100071 |
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| 2010 | Amann J, Lange D, Schüler M and Rabus R (2010) Substrate-dependent regulation of carbon catabolism in marine sulfate-reducing Desulfobacterium autotrophicum HRM2. J Mol Microbiol Biotechnol 18:74–84 DOI: 10.1159/000277655 |
| Brodkorb D, Gottschall M, Marmulla R, Lüddeke F and Harder J (2010) Linalool dehydratase-isomerase, a bifunctional enzyme in the anaerobic degradation of monoterpenes. J. Biol. Chem. 285, 30436−30442 DOI: 10.1074/jbc.M109.084244 |
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| Harder J (2010) Anaerobic degradation of isoprene-derived compounds. In: Handbook of hydrocarbon and lipid microbiology. Timmis, K.N. (ed.), Springer, Heidelberg. DOI: 10.1007/978-3-540-77587-4_68 |
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| Harder J (2010) Isoprene, isoprenoids and sterols. In: Handbook of hydrocarbon and lipid microbiology. Timmis, K.N. (ed.), Springer, Heidelberg. DOI: 10.1007/978-3-540-77587-4_7 |
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| Musat F, Wilkes H, Behrends A, Woebken D and Widdel F (2010) Microbial nitrate-dependent cyclohexane degradation coupled with anaerobic ammonium oxidation. ISME J. 4, 1290–1301 DOI: 10.1038/ismej.2010.50 |
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| Neumann J, Grundmann O, Thöming J, Schulte S and Stolte S (2010) Anaerobic biodegradability of ionic liquid cations under denitrifying conditions. Green Chem. 12, 620-627 DOI: 10.1039/B918453H |
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| Rabus R and Trautwein K (2010) Proteogenomics to study the anaerobic degradation of aromatic compounds and hydrocarbons. In: Handbook of hydrocarbon and lipid microbiology. Timmis, K.N. (ed.), Springer, Heidelberg DOI: 10.1007/978-3-540-77587-4_344 |
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| Rotaru A-E, Probian C, Wilkes H and Harder J (2010) Highly enriched Betaproteobacteria growing anaerobically with p-xylene and nitrate. FEMS Microbiol. Ecol. 71:460-468 DOI: 10.1111/j.1574-6941.2009.00814.x |
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| Schauer R, Bienhold C, Ramette A and Harder J (2010) Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean. ISME J. 4:159-170 DOI: 10.1038/ismej.2009.106 |
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| Widdel F and Musat F (2010) Energetic and other quantitative aspects of microbial hydrocarbon utilization. In: Handbook of hydrocarbon and lipid microbiology. Timmis, K.N. (ed.), Springer, Heidelberg DOI: 10.1007/978-3-540-77587-4_57 |
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| Widdel F and Grundmann O (2010) Biochemistry of the anaerobic degradation of non-methane alkanes. In: Handbook of hydrocarbon and lipid microbiology. Timmis, K.N. (ed.), Springer, Heidelberg DOI: 10.1007/978-3-540-77587-4_64 |
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| Koch, B.P., J. Harder, R. J. Lara and G.Kattner (2005) The effect of selective microbial degradation on the composition of mangrove derived pentacyclic triterpenols in surface sediments. Organic Geochemistry 36:273-285 DOI: 10.1016/j.orggeochem.2004.07.019 | |
| Krüger M. and T. Treude (2005) New insights into the physiology and regulation of the anaerobic oxidation of methane. In: Microorganisms and earth systems - Advances in Geomicrobiology. Gadd, G. M., Semple, K. T. & Lappin-Scott, H. M. (eds.), SGM Microbiology 65, G. M. Gadd, K. T. Temple and H. M. Lappin-Scott (eds.), Cambridge University Press DOI: 10.1017/CBO9780511754852.015 | |
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| Kube, M., A. Beck, A. Meyerdierks, R. Amann, R. Reinhardt and R. Rabus (2005) A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats. Systematic and Applied Microbiology 28:287-294 DOI: 10.1016/j.syapm.2005.02.006 | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Class IV. Deltaproteobacteria. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order I. Desulfurellales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Desulfurellaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order II. Desulfovibrionales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Desulfovibrionaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus I. Desulfovibrio. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family II. Desulfomicrobiaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family III. Desulfohalobiaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus III. Desulfothermus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family IV. Desulfonatronumaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order III. Desulfobacterales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Desulfobacteraceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus I. Desulfobacter. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds),Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus II. Desulfobacterium. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus III. Desulfobacula. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus IV. Desulfobotulus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus VI. Desulfococcus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds),Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus VII. Desulfofaba. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus VIII. Desulfofrigus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus IX. Desulfonema. In:D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus X. Desulfosarcina. In:D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus XII. Desulfotignum. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family II. Desulfobulbaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus I. Desulfobulbus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus II. Desulfocapsa. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus IV. Desulforhopalus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus V. Desulfotalea. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order IV. Desulfarcales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Desulfarculaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus I. Desulfarculus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order V. Desulfuromonales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Desulfuromonaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus I. Desulfuromonas. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Order VI. Syntrophobacterales. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family I. Syntrophobacteraceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus III. Desulforhabdus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Genus IV. Desulfovirga. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Rainey, F.A., Widdel, F. (2005) Family II. Syntrophaceae. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Schink, B. (2005) Genus I. Syntrophus. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuever, J., Schink, B. (2005) Genus III. Malonomonas. In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Kuehner, S., L. Wöhlbrand, I. Fritz, W. Wruck, C. Hultschig, P. Hufnagel, M. Kube, R. Reinhardt and R. Rabus (2005) Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1. Journal of Bacteriology 187(4):1493-1503 DOI: 10.1128/JB.187.4.1493-1503.2005 | |
| Nauhaus K., T. Treude, A. Boetius and M. Krüger (2005) Environmental regulation of the anaerobic oxidation of methane: A comparison of ANME-I or -II communities. Environmental Microbiology 7(1):98-106 DOI: 10.1111/j.1462-2920.2004.00669.x | |
| Rabus, R. (2005) Biodegradation of hydrocarbons under anoxic conditions. In: Petroleum Microbiology, Ollivier, B. and M. Magot (eds.), ASM Press, Washington, D.C. | |
| Rabus, R. (2005) Functional genomics of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. Applied Microbiology and Biotechnology 68:580-587 DOI: 10.1007/s00253-005-0030-x | |
| Rabus, R., M. Kube, J. Heider, A. Beck, K. Heitmann, F. Widdel and R. Reinhardt (2005) The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. Archives of Microbiology 183:27-36 DOI: 10.1007/s00203-004-0742-9 | |
| Schüler, D. (2005) Nanokristalle für die Magnetfeldorientierung: Biomineralisation von Magnetosomen in Bakterien. Biospektrum 3/11:291-294 | |
| Schüler, D., and K.H. Schleifer (2005) Genus IV.The genus Magnetospirillum Schleifer In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds), Bergey’s Manual of Systematic Bacteriology, second edition, Vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York | |
| Schultheiss, D., R. Handrick, D. Jendrossek, M. Hanzlik and D. Schüler (2005) The presumptive magnetosome protein Mms16 is a poly(3-hydroxybutyrate) granule-bound protein (phasin) in Magnetospirillum gryphiswaldense. Journal of Bacteriology 187(7):2416-2425 DOI: 10.1128/JB.187.7.2416-2425.2005 | |
| Ullrich, S., M. Kube, S. Schübbe, R. Reinhardt and D. Schüler (2005) A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth. Journal of Bacteriology 187(21):7176-7184 DOI: 10.1128/JB.187.21.7176-7184.2005 |