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Pu­bli­ka­tio­nen 2013

Pu­bli­ka­tio­nen 2013

De­part­ment of Bio­geo­che­mis­try

Allers E., Abed R.M.M., Wehrmann L.M., Wang T., Larsson A.I., Purser A., and de Beer D: Re­sis­tan­ce of Lo­phe­lia per­tu­sa to co­ver­age by se­di­ment and pe­tro­le­um drill cut­tings. Ma­ri­ne Pol­lu­ti­on Bul­le­tin 74, 132-140 (2013)  PubMed
Bayraktarov E, Price, RE, Ferdelman TG, and Finster K: The pH and pCO2 de­pen­dence of sul­fa­te re­duc­tion in shal­low-sea hydro­ther­mal CO2 – ven­ting se­di­ments (Mi­los Is­land, Greece). Fron­tiers Mi­cro­bio­lo­gy, 4, 111 doi: 10.3389/​fmi­cb.2013.00111 (2013)  PubMed  Full Text
Brunner, B.; Contreras, S.; Lehmann, M. F.; Matantseva, O.; Rollog, M.; Kalvelage, T.; Klockgether, G.; Lavik, G.; Jetten, M. S. M.; Kartal, B.; Kuypers, M. M. M.: Ni­tro­gen iso­to­pe ef­fects in­du­ced by anam­m­ox bac­te­ria. PNAS 110, 18994-18999. (2013)  PubMed
Canion, A.; Prakash, O.; Green, S. J.; Jahnke, L.; Kuypers, M. M. M.; Kostka, J. E.: Iso­la­ti­on and phy­sio­lo­gi­cal cha­rac­te­riza­t­i­on of psy­chro­phi­lic de­ni­tri­fy­ing bac­te­ria from per­man­ent­ly cold Arc­tic fjord se­di­ments (Sval­bard, Nor­way). En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1606-1618. (2013)  PubMed
Contreras, S., P. Meister, B. Liu, X. Prieto-Mollarc, K.-U. Hinrichs, A. Khalili, T. G. Ferdelman, M. M. M. Kuypers, and B. B. Jørgensen: Cy­clic 100-ka (gla­ci­al-in­ter­gla­ci­al) mi­gra­ti­on of sub­seaf­loor re­dox zo­na­ti­on on the Pe­ru­vi­an shelf. PNAS 110, 18098-18103 (2013)  PubMed  Full Text
Foster R., Sztejrenszus S. and Kuypers M.M.M.: Mea­su­ring car­bon and N2 fixa­ti­on in field po­pu­la­ti­ons of co­lo­ni­al and free-li­ving unicel­lu­lar Cya­no­bac­te­ria using na­no­me­ter-sca­le Se­con­da­ry Ion Mass Spec­tro­me­try. J. Phy­col. 49, 3, 502-516. doi: 10.1111/​jpy.12057. (2013)  Wiley  Full Text
Gutknecht, E.; Dadou, I.; Le Vu, B.; Cambon, G.; Sudre, J.; Garcon, V.; Machu, E.; Rixen, T.; Kock, A.; Flohr, A.; Paulmier, A.; Lavik, G.: Cou­p­led phy­si­cal/​bio­geo­che­mi­cal mo­de­ling in­clu­ding O-2-de­pen­dent pro­ces­ses in the Eas­tern Boun­da­ry Up­wel­ling Sys­tems: ap­p­li­ca­ti­on in the Ben­gue­la. Bio­geo­sci­en­ces 10, 3559-3591. (2013)  Biogeosciences   Full Text
Gutknecht, E.; Dadou, I.; Marchesiello, P.; Cambon, G.; Le Vu, B.; Sudre, J.; Garcon, V.; Machu, E.; Rixen, T.; Kock, A.; Flohr, A.; Paulmier, A.; Lavik, G.: Ni­tro­gen trans­fers off Wal­vis Bay: a 3-D cou­p­led phy­si­cal/​bio­geo­che­mi­cal mo­de­ling ap­proach in the Na­mi­bi­an up­wel­ling sys­tem. Bio­geo­sci­en­ces 10, 4117-4135. (2013)  Biogeosciences   Full Text
Heindel K, Birgel D, Brunner B, Thiel V, Wesphal H, Gischler E, Ziegenbalg SB, Cabioch G, Sjövall P, Peckmann J: Post-gla­ci­al mi­cro­bia­li­te for­ma­ti­on in co­ral reefs of the Pa­ci­fic, At­lan­tic, and In­dian Oce­ans. Chem. Geol.,304-305:117-118. (2013)  ScienceDirect
Heisterkamp, I. M.; Schramm, A.; Larsen, L. H.: Svenningsen, N. B.; Lavik, G.; de Beer, D.; Stief, P.: Shell bio­film-as­so­cia­ted ni­trous oxi­de pro­duc­tion in ma­ri­ne mol­luscs: pro­ces­ses, pre­cur­sors and re­la­ti­ve im­port­an­ce. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1943-1955. (2013)  PubMed
Holtappels, M., R. N. Glud, D. Donis, B. Liu, A. Hume, F. Wenzhöfer and M. M. M. Kuypers: Ef­fects of tran­si­ent bot­tom wa­ter cur­rents and oxy­gen con­cen­tra­ti­ons on bent­hic ex­ch­an­ge ra­tes as as­ses­sed by eddy cor­re­la­ti­on mea­su­re­ments. J. Geo­phys. Res. Oce­ans, 118, doi:10.1002/​jgrc.20112. (2013)  Wiley
Jaekel Ulrike ,Niculina Musat, Birgit Adam, Marcel Kuypers, Olav Grundmann and Florin Musat: An­ae­ro­bic de­gra­da­ti­on of pro­pa­ne and bu­ta­ne by sul­fa­te-re­du­cing bac­te­ria en­ri­ched from ma­ri­ne hy­dro­c­ar­bon cold seeps. The ISME Jour­nal 7, 885-895. (2013)  PubMed  Full Text
Kalvelage T, Lavik G, Lam P, Contreras S, Arteaga L, Loescher CR, Oschlies A, Paulmier A, Stramma and Kuypers MMM.: Ni­tro­gen cy­cling dri­ven by or­ga­nic mat­ter ex­port in the South Pa­ci­fic oxy­gen mi­ni­mum zone. Na­tu­re Geo­sci­ence 6, 228–234 doi:10.1038/​ngeo1739  (2013)  Nature
Kamyshny, A.; Oduro, H.; Mansaray, Z. F.; Farquhar, J.: Hy­dro­gen Cya­ni­de Ac­cu­mu­la­ti­on and Trans­for­ma­ti­ons in Non-pol­lu­ted Salt Mar­sh Se­di­ments. Aqua­tic Geo­che­mis­try 19, 97-113. (2013)  Springer
Könneke, M.; Kuever, J.; Galushko, A.; Jørgensen, B. B.: Des­ul­fo­con­ve­xum al­gi­dum gen. nov., sp nov., a psy­chro­phi­lic sul­fa­te-re­du­cing bac­te­ri­um iso­la­ted from a per­man­ent­ly cold ma­ri­ne se­di­ment. In­ter­na­tio­nal Jour­nal of Sys­te­ma­tic and Evo­lu­tio­na­ry Mi­cro­bio­lo­gy 63, 959-964. (2013)  PubMed
Krupke A, Musat N, LaRoche N, Mohr W, Fuchs B, Amann R, Kuypers MMM and Foster R.: In situ iden­ti­fi­ca­ti­on and N2 and C fixa­ti­on ra­tes of un­cul­ti­va­ted cya­no­bac­te­ria po­pu­la­ti­ons. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 36, 259-271 doi.org/​10.1016/​j.syapm.2013.02.002 (2013)  PubMed
Lichtschlag A, Kamyshny A, Ferdelman TG and deBeer D.: In­ter­me­dia­te sul­fur oxi­da­ti­on sta­te com­pounds in the eu­xi­nic sur­face se­di­ments of the Dvu­re­chens­kii mud vol­ca­no (Black Sea). Geo­chem. Cos­mochim. Acta 105: 130-145, doi.org/​10.1016/​j.gca.2012.11.025 (2013)  ScienceDirect
Liu B., K. Kindler, A. Khalili: Dy­na­mic so­lu­te re­lease from ma­ri­ne ag­gre­ga­tes. Lim­no­lo­gy and Ocea­no­gra­phy: Fluids and En­vi­ron­ments, 2.doi:10.1215/​21573689-2016772 (2013)  LaO  Full Text
Meister P., B. Liu, T.G. Ferdelman, B.B. Jørgensen , A. Khalili: Con­trol of sulp­ha­te and me­tha­ne dis­tri­bu­ti­ons in ma­ri­ne se­di­ments by or­ga­nic mat­ter re­ac­tivi­ty. Geo­chem. Cos­mochim. Acta, 104:183-193; doi.org/​10.1016/​j.gca.2012.11.011 (2013)  ScienceDirect
Meister, P.: Two op­po­sing ef­fects of sul­fa­te re­duc­tion on car­bo­na­te pre­ci­pi­ta­ti­on in nor­mal ma­ri­ne, hy­per­sa­li­ne, and al­ka­li­ne en­vi­ron­ments. Geo­lo­gy, 41, 499-502. (2013)  Geology
Meister, P.; Mckenzie, J. A.; Bernasconi, S. M.; Brack, P.: Do­lo­mi­te for­ma­ti­on in the shal­low seas of the Al­pi­ne Tri­as­sic. Se­di­men­to­lo­gy 60, 270-291. (2013)  Wiley
Miletto, M., P. L. E. Bodelier, T. G. Ferdelman, B. B. Jørgensen and H. J. Laanbroek: Ef­fect of the ae­ren­chy­matous he­lo­phy­te Gly­ce­ria ma­xi­ma on the sul­fa­te-re­du­cing com­mu­nities in two con­tras­ting ri­pa­ri­an grass­land soils. Plant Soil, on­line, DOI 10.1007/​s11104-013-1608-1. (2013)  KNAW
Milucka, J.; Widdel, F.; Shima, S.: Im­mu­no­lo­gi­cal de­tec­tion of en­zy­mes for sul­fa­te re­duc­tion in an­ae­ro­bic me­tha­ne-oxi­di­zing con­sor­tia. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1561-1571. (2013)  PubMed
Mohr, W., T. Vagner, M. M. M. Kuypers, M. Ackermann, M. and J. LaRoche: Re­so­lu­ti­on of Con­flic­ting Si­gnals at the Sin­gle-Cell Le­vel in the Re­gu­la­ti­on of Cya­no­bac­te­ri­al Pho­to­syn­the­sis and Ni­tro­gen Fixa­ti­on. PLOS ONE, 8 (6) e66060. (2013)  PubMed  Full Text
Monismith, S. G.; Herdman, L. M. M.; Ahmerkamp, S.; Hench, J. L.: Wave Trans­for­ma­ti­on and Wave-Dri­ven Flow across a Steep Co­ral Reef. Jour­nal of phy­si­cal Ocea­no­gra­phy 43, 1356-1379. (2013)  AMS  Full Text
Müller IA, Brunner B, Breuer C, Coleman M, Bach W.: The oxy­gen iso­to­pe equi­li­bri­um frac­tio­na­ti­on bet­ween sul­fi­te spe­cies and wa­ter. Geochim. Cos­mochim. Acta 120, 562-581. (2013)  ScienceDirect
Müller IA, Brunner B, Coleman M.: Iso­to­pic evi­dence of the pi­vo­tal role of sul­fi­te oxi­da­ti­on in shaping the oxy­gen iso­to­pe si­gna­tu­re of sul­fa­te. Chem Geol 354, 186-202. (2013)  ScienceDirect
Owens, Jeremy D., Benjamin C. Gill, Hugh C. Jenkyns, Steven M. Bates, Silke Severmann, Marcel M. M. Kuypers, Richard G. Woodfine, and Timothy W. Lyons: Sul­fur iso­topes track the glo­bal extent and dy­na­mics of eu­xi­nia du­ring Cret­aceous Ocea­nic An­oxic Event 2. PNAS, on­line (2013)  PubMed
Schunck, H., G. Lavik, D. K. Desai, T. Großkopf, T. Kalvelage, C. R. Löscher, A. Paulmier, S. Contreras, H. Siegel, M. Holtappels, P. Rosenstiel, M. B. Schilhabel, M. Graco, R. A. Schmitz, M. M. M. Kuypers, J. LaRoche: Gi­ant Hy­dro­gen Sul­fi­de Plu­me in the Oxy­gen Mi­ni­mum Zone off Peru Sup­ports Che­mo­li­tho­au­to­tro­phy. PLoS ONE 8(8): e68661. doi:10.1371/​jour­nal.pone.0068661. (2013)  PubMed  Full Text
Scott, C.; Planavsky, N. J.; Dupont, C. L.; Kendall, B.; Gill, B. C.; Robbins, L. J.; Husband, K. F.; Arnold, G. L.; Wing, B. A.; Poulton, S. W.; Bekker, A.; Anbar, A. D.; Konhauser, K. O.; Lyons, T. W.: Bio­a­vail­a­bi­li­ty of zinc in ma­ri­ne sys­tems through time. Na­tu­re Geo­sci­ence 6, 125-128. (2013)  Nature
Sergeeva, N. G.; Mazlumyan, S. A.; Cagatay, N.; Lichtschlag, A.:Hy­po­xic Mei­o­bent­hic Com­mu­nities of the Is­tan­bul Strait's (Bos­po­rus) Out­let Area of the Black Sea. Tur­kish Jour­nal of Fis­he­ries and Aqua­tic Sci­en­ces 13, 33-41. (2013)  eprints
Sheik, A. R.; Brussaard, C. P. D.; Lavik, G.; Foster, R. A.; Musat, N.; Adam, B.; Kuypers, M. M. M.: Vi­ral in­fec­tion of Phaeo­cys­tis glo­bo­sa im­pe­des re­lease of chi­ti­n­ous star-like struc­tu­res: quan­ti­fi­ca­ti­on using sin­gle cell ap­proa­ches. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1441-1451. (2013)  PubMed
Song, G. D., S. M. Liu, H. Marchant, M. M. M. Kuypers, and G. Lavik: Anam­m­ox, de­ni­tri­fi­ca­ti­on and dis­si­mi­la­to­ry ni­tra­te re­duc­tion to am­mo­ni­um in the East Chi­na Sea se­di­ment. Bio­geo­sci­en­ces 10, 6851–6864. (2013)  Biogeosciences
Thang, N. M.; Bruchert, V.; Formolo, M.; Wegener, G.; Ginters, L.; Jorgensen, B. B.; Ferdelman, T. G.: The Im­pact of Se­di­ment and Car­bon Flu­xes on the Bio­geo­che­mis­try of Me­tha­ne and Sul­fur in Lit­to­ral Bal­tic Sea Se­di­ments (Him­merf­jar­den, Swe­den). Es­tua­ries and Co­asts 36, 98-115. (2013)  Springer
Wehrmann LM, Arndt S, März C, Ferdelman TG, Brunner B.: The evo­lu­ti­on of ear­ly dia­ge­ne­tic si­gnals in Be­ring Sea sub­seaf­loor se­di­ments in re­s­pon­se to va­ry­ing or­ga­nic car­bon de­po­si­ti­on over the last 4.3 Ma. Geo­chem. Cos­mochim. Acta 109, 175-196 doi.org/​10.1016/​j.gca.2013.01.02 (2013)  ScienceDirect
Xie S, Lipp JS, Wegener G, Ferdelman, TG and Hinrichs KU.: Tur­no­ver of mi­cro­bi­al li­pids in the deep bio­s­phe­re and growth of bent­hic ar­cha­el po­pu­la­ti­ons. PNAS 110, 6010-6014 doi.10.1073/​pnas.1218569110. (2013)  PubMed  Full Text
M.Sc. theses
Charlotte Vavourakis: Te­tra­thio­na­te tur­no­ver in ma­ri­ne san­dy se­di­ments. Uni­ver­si­ty of Ams­ter­dam, NL (2013)
Ph.D. theses
Inigo Müller: The pi­vo­tal role of sul­fi­te spe­cies in shaping the oxy­gen iso­to­pe com­po­si­ti­on of sul­fa­te: new in­sights from a sta­ble iso­to­pe per­spec­tive. Uni­ver­si­ty of Bre­men. (2013)
Sarah Sokoll: Trans­for­ma­ti­on pro­ces­ses of ni­tro­gen, phos­pho­rus and iron in sub-eu­pho­tic wa­ters and sur­face se­di­ments. Uni­ver­si­ty of Bre­men. (2013)
Thang Manh Nguyen: Bio­geo­che­mi­cal con­trols on car­bon and sul­fur cy­cling in Bal­tic Sea se­di­ments. Uni­ver­si­ty of Bre­men. (2013)

Mi­cro­sen­sor Group

Abed, R. M. M.; Lam, P.; de Beer, D., Stief, P.: High ra­tes of de­ni­tri­fi­ca­ti­on and ni­trous oxi­de emis­si­on in arid bio­lo­gi­cal soil crusts from the Sul­ta­na­te of Oman. ISME Jour­nal 7, 1862-1875. (2013)  PubMed
Behrendt, A.; de Beer, D.; Stief, P.: Ver­ti­cal ac­tivi­ty dis­tri­bu­ti­on of dis­si­mi­la­to­ry ni­tra­te re­duc­tion in co­as­tal ma­ri­ne se­di­ments. Bio­geo­sci­en­ces 10, 7509-7529. (2013)  Biogeosciences  Full Text
Long, M. H.; Berg, P.; de Beer, D.; Zieman, J. C.: In Situ Co­ral Reef Oxy­gen Me­ta­bo­lism: An Eddy Cor­re­la­ti­on Stu­dy. PLoS ONE 8, e58581. (2013)  PubMed  Full Text
Farí­as, M. E.; Rascovan, N.; Toneatti, D. M.; Albarrací­n, V. H.; Flores, M. R.; Poiré, D. G.; Collavino, M. M.; Aguilar, O. M.; Vazquez, M. P.; Polerecky: The Dis­co­very of Stroma­to­li­tes De­ve­lo­ping at 3570 m above Sea Le­vel in a High-Alti­tu­de Vol­ca­nic Lake So­com­pa, Ar­gen­ti­ne­an An­des. PLoS ONE 8, e53497. (2013)  PubMed  Full Text
Finke, N.; Hoehler, T. M.; Polerecky, L.; Buehring, B.; Thamdrup, B.: Com­pe­ti­ti­on for in­or­ga­nic car­bon bet­ween oxy­ge­nic and an­oxy­ge­nic pho­to­tro­phs in a hy­per­sa­li­ne mi­cro­bi­al mat, Gu­er­re­ro Ne­gro, Me­xi­co. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1532–1550. (2013)  PubMed
Kamp A., Stief P., Knappe J. de Beer D.: Re­s­pon­se of the Ubi­qui­tous Pel­agic Dia­tom Tha­l­as­sio­si­ra weiss­flogii to Darkness and An­oxia. PLoS ONE 8: e82605. (2013)  PubMed  Full Text
Poulsen M, Kofoed MVW, Larsen LH, Schramm A, Stief P.: Chi­ro­no­mus plu­mo­sus lar­vae in­crea­se flu­xes of de­ni­tri­fi­ca­ti­on pro­ducts and di­ver­si­ty of ni­tra­te-re­du­cing bac­te­ria in freshwa­ter se­di­ment. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy. on­line (2013)  PubMed  Full Text
Stief, P.: Sti­mu­la­ti­on of mi­cro­bi­al ni­tro­gen cy­cling in aqua­tic eco­sys­tems by bent­hic ma­cro­fau­na: me­cha­nisms and en­vi­ron­men­tal im­pli­ca­ti­ons. Bio­geo­sci­en­ces 10, 7829-7846. (2013)  Biogeosciences  Full Text
Stief, P.; Kamp, A.; de Beer, D.: Role of Dia­toms in the Spa­ti­al-Tem­po­ral Dis­tri­bu­ti­on of In­tra­cel­lu­lar Ni­tra­te in In­terti­dal Se­di­ment. PLoS ONE 8, e73257. (2013)  PubMed  Full Text
You, X. L.; Sun, S.; Zhu, J. Q.; Li, Q.; Hu, W. X.; Dong, H. L.: Mi­cro­bi­al­ly me­dia­ted do­lo­mi­te in Cam­bri­an stroma­to­li­tes from the Ta­rim Ba­sin, north-west Chi­na: im­pli­ca­ti­ons for the role of or­ga­nic sub­stra­te on do­lo­mi­te pre­ci­pi­ta­ti­on. Ter­ra Nova 25, 387–395. (2013)  Wiley
M.Sc. theses
Bettina Buchmann: Oxy­ge­nic Pho­to­syn­the­sis in Cya­no­bac­te­ria as a Pro­tec­tion Me­cha­nism against Iron Pre­ci­pi­ta­ti­on. Uni­ver­si­ty of Ol­den­burg. (2013)
Folasade Adeboyejo: Ni­tri­fi­ca­ti­on pro­cess in the Dead Sea and its un­der­wa­ter springs; rea­li­ty or mi­ra­ge? Uni­ver­si­ty of Bre­men. (2013)
Jan Knappe: The pel­agic dia­tom Tha­l­as­sio­si­ra weiss­fo­gii is ca­pa­ble of dis­si­mi­la­to­ry ni­tra­te re­duc­tion to am­mo­ni­um (DNRA)Mas­ter The­sis. Lin­köping Uni­ver­si­ty, Swe­den. (2013)
Lisa Schueler: De­tec­tion Me­thods and En­vi­ron­men­tal Ab­un­dance of In­tron-Con­tai­ning Bac­te­ri­al SSU. Uni­ver­si­ty Han­no­ver. (2013)
Ph.D. theses
Kristina Stemmer: Shell for­ma­ti­on and mi­cros­turc­tu­re of the oce­an quahog Arc­tica is­lan­di­ca: Does oce­an aci­di­fi­ca­ti­on mat­ter? (2013)

De­part­ment of Mi­cro­bio­lo­gy

Beese, P.; Venzlaff, H.; Srinivasan, J.; Garrelfs, J.; Stratmann, M.; Mayrhofer, K.: Mo­ni­to­ring of an­ae­ro­bic mi­cro­bi­al­ly in­flu­en­ced cor­ro­si­on via elec­tro­che­mi­cal fre­quen­cy mo­du­la­ti­on. Elec­tro­chi­mi­ca Acta 105, 239-247. (2013)  ScienceDirect
Bondoso, J., J. Harder, and O.M. Lage: rpoB gene as a no­vel mar­ker to in­fer phy­lo­ge­ny in Planc­to­myce­ta­les. An­to­nie van Lee­uwen­ho­ek 104, 477-488. (2013)  PubMed
Frank, C.S.,C. Klockow, M. Richter, F.O. Glöckner, and J. Harder: Ge­ne­tic di­ver­si­ty of Rho­do­pi­rel­lu­la strains. An­to­nie van Lee­uwen­ho­ek 104, 547-550. (2013)  PubMed
Lampert, K. P.; Blassmann, K.; Hissmann, K.; Schauer, J.; Shunula, P.; el Kharousy, Z.; Ngatunga, B. P.; Fricke, H.; Schartl, M.: Sin­gle-male pa­ter­ni­ty in co­elacanths. Na­tu­re Com­mu­ni­ca­ti­ons 4, 2488. (2013)  PubMed
Hahnke, R.L., and J. Harder: Phy­lo­ge­ne­tic di­ver­si­ty of Flav­o­bac­te­ria iso­la­ted from the North Sea on so­lid me­dia. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 36, 497-504. (2013)  PubMed
Hahnke, R.L., C. Probian, B.M. Fuchs, and J. Harder: Va­ria­ti­ons in pel­agic bac­te­ri­al com­mu­nities in the North At­lan­tic Oce­an co­in­ci­de with wa­ter bo­dies. Aqua­tic Mi­cro­bi­al Eco­lo­gy 71, 131-140. (2013)  AME  Full Text
Klindworth, A., M. Richter, T. Richter-Heitmann, C.-E. Wegner, C.S. Frank, F.O. Glöckner, and J. Harder: Per­ma­nent draft ge­no­me of Rho­do­pi­rel­lu­la ru­bra SWK7.  Ma­ri­ne Ge­no­mics 13(2014), 11-12 (2013)  PubMed
Koßmehl, S., L. Wöhlbrand, K. Drüppel, C. Feenders, B. Blasius, and R. Rabus.: Sub­cel­lu­lar pro­te­in lo­ca­liza­t­i­on (cell en­ve­l­o­pe) in Phaeo­b­ac­ter in­hi­bens DSM 17395. Pro­teo­mics 13, 2743–2760. (2013)  PubMed
Lin, Y. S.; Lipp, J. S.; Elvert, M.; Holler, T.; Hinrichs, K. U.: As­ses­sing pro­duc­tion of the ubi­qui­tous ar­chae­al digly­co­syl te­trae­ther li­pids in ma­ri­ne sub­sur­face se­di­ment using in­tra­mole­cu­lar sta­ble iso­to­pe pro­bing. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15, 1634-1646. (2013)  PubMed
Mann, A.J., R.L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F.O. Glöckner, R.I. Amann, and H. Teeling: The ge­no­me of the al­gae-as­so­cia­ted ma­ri­ne flav­o­bac­te­ri­um Formosa Agariphila KMM 3901T re­veals a broad po­ten­ti­al for the de­gra­da­ti­on of al­gal po­ly­sac­cha­ri­des. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 79, 6813-6822. (2013)  PubMed  Full Text
Siegert, M.; Taubert, M.; Seifert, J.; von Bergen-Tomm, M.; Basen, M.; Bastida, F.; Gehre, M.; Richnow, H. H.; Kruger, M.: The ni­tro­gen cy­cle in an­ae­ro­bic me­tha­notro­phic mats of the Black Sea is lin­ked to sul­fa­te re­duc­tion and bio­mass de­com­po­si­ti­on. FEMS 86, 231-245. (2013)  PubMed
Spring, S., T. Riedel, C. Spröer, S. Yan, J. Harder, and B.M. Fuchs: Ta­xo­no­my and evo­lu­ti­on of bac­te­riochlo­ro­phyll a-con­tai­ning mem­bers of the OM60/​NOR5 cla­de of ma­ri­ne gam­ma­pro­te­ob­ac­te­ria: de­scrip­ti­on of Lu­mi­ni­phi­lus syl­ten­sis gen. nov., sp. nov., re­clas­si­fi­ca­ti­on of Ha­liea ru­bra as Pseu­do­ha­liea ru­bra gen. nov., comb. nov., and emen­da­ti­on of Chro­ma­to­cur­vus ha­lo­to­le­rans. BMC Mi­cro­bio­lo­gy 13:118. (2013)  PubMed  Full Text
Venzlaff, H.; Enning, D.; Srinivasan, J.; Mayrhofer, K. J. J.; Hassel, A. W.; Widdel, F.; Stratmann, M.: Ac­ce­le­ra­ted ca­tho­dic re­ac­tion in mi­cro­bi­al cor­ro­si­on of iron due to di­rect elec­tron uptake by sul­fa­te-re­du­cing bac­te­ria. Cor­ro­si­on Sci­ence 66, 88-96. (2013)  ScienceDirect
Wegner, C.-E., T. Richter-Heitmann, A. Klindworth, C. Klockow, M. Richter, T. Achstetter, F.O. Glöckner, and J. Harder: Ex­pres­si­on of sul­fa­ta­ses in Rho­do­pi­rel­lu­la bal­ti­ca and the di­ver­si­ty of sul­fa­ta­ses in the ge­nus Rho­do­pi­rel­lu­la. Ma­ri­ne Ge­no­mics 9, 51-61. (2013)  PubMed
Zech, H.; Hensler, M.; Kossmehl, S.; Druppel, K.; Wohlbrand, L.; Trautwein, K.; Hulsch, R.; Maschmann, U.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Ad­ap­ta­ti­on of Phaeo­b­ac­ter in­hi­bens DSM 17395 to growth with com­plex nut­ri­ents. Pro­teo­mics 13, 2851-2868. (2013)  PubMed  Full Text
Zech, H.; Hensler, M.; Kossmehl, S.; Druppel, K.; Wohlbrand, L.; Trautwein, K.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Dy­na­mics of ami­no acid uti­liza­t­i­on in Phaeo­b­ac­ter in­hi­bens DSM 17395. Pro­teo­mics 13, 2869-2885. (2013)  PubMed
B.Sc. and M.Sc. thesis
Andreas Heß: Die Li­n­a­lool-Iso­me­ra­se aus Thau­e­ra li­n­a­loo­len­tis. Uni­ver­si­ty of Ap­p­lied Sci­en­ces Em­den/​Leer (2013)
Deni Ribicic: Di­ver­si­ty of mi­cro­or­ga­nisms in bal­last wa­ter con­ta­mi­na­ted with die­sel fuel. Eu­ro­pean M.Sc. Ma­ri­ne Bio­lo­gy and Con­ser­va­ti­on, Uni­ver­si­ty Gent (Su­per­vi­sor: Jens Har­der) (2013)
Irene Paschin: Cha­rak­te­ri­sie­rung der Li­n­a­lool-Iso­me­ra­se. Uni­ver­si­ty of Ap­p­lied Sci­en­ces Lü­beck (2013)
Linda Gloria Mahler: Phy­sio­lo­gi­sche Cha­rak­te­ri­sie­rung von Mu­tan­ten im Mo­no­ter­pen­stoff­wech­sel von Ca­s­tel­la­ni­el­la de­fra­grans. Beuth Hoch­schu­le für Tech­nik (Uni­ver­si­ty of Ap­p­lied Sci­en­ces) Ber­lin (2013)
Maria Papadatou: Bac­te­ri­al di­ver­si­ty as­so­cia­ted with an­thro­po­ge­nic par­ti­cles and neus­ton in the sur­face lay­er of the East At­lan­tic Oce­an. Eu­ro­pean M.Sc. Ma­ri­ne Bio­lo­gy and Con­ser­va­ti­on, Uni­ver­si­ty Gent
Sebastian Jordan: Ge­no­mi­sche und phy­sio­lo­gi­sche ana­ly­sen von Kan­di­da­ten­ge­nus OP3 Zel­len aus me­tha­no­ge­nen An­rei­che­run­gen. Uni­ver­si­ty of Ap­p­lied Sci­en­ces Aa­chen (2013)
Ph.D. theses
Richard L. Hahnke: Cul­ti­va­ti­on of Flav­o­bac­te­ria and other in situ ab­un­dant bac­te­ria from the North Sea. Dis­ser­ta­ti­on, Uni­ver­si­ty Bre­men (2013)
Ph.D. theses
Richard L. Hahnke: Cul­ti­va­ti­on of Flav­o­bac­te­ria and other in situ ab­un­dant bac­te­ria from the North Sea. Dis­ser­ta­ti­on, Uni­ver­si­ty Bre­men (2013)

Eco­phy­sio­lo­gy Group

Bondarev, V., Richter, M., Romano, St., Piel, J., Schwedt, A. and Schulz-Vogt, H. N.: The ge­nus Pseu­do­vi­brio con­ta­ins me­ta­bo­li­cal­ly ver­sa­ti­le bac­te­ria ad­ap­ted for sym­bio­sis. En­vi­ron. Mi­cro­bi­ol. 15: 2095-2113. (2013)  PubMed  Full Text
Ph.D. theses
Anne-Christin Kreutzmann: Elec­tron do­nors and ac­cep­tors for mem­bers of the fa­mi­ly Beggia­toaceae (2013)

Mole­cu­lar Eco­lo­gy Group

Allers E., Moraru C., Duhaime M.B., Beneze E., Solonenko N., Barrero Canosa J., Amann R., and Sullivan M.B.: Sin­gle-cell and po­pu­la­ti­on le­vel vi­ral in­fec­tion dy­na­mics re­vea­led by pha­ge­FISH, a me­thod to vi­sua­li­ze in­tra­cel­lu­lar and free vi­ru­s­es. En­vi­ron. Mi­cro­bi­ol. 15, 2306-2318 (2013)  PubMed  Full Text
Bennke C. M., Neu T. R., Fuchs B. M. and Amann R.: Map­ping gly­co­con­ju­ga­te-me­dia­ted in­ter­ac­tions of ma­ri­ne Bac­te­ro­ide­tes with dia­toms. Syst. Appl. Mi­cro­bi­ol. 36, 417–425 (2013)  PubMed
Finster K. W., Kjeldsen K., Kube M., Reinhardt R., Mußmann M., Amann R. and Schreiber L.: Com­ple­te ge­no­me se­quence of Des­ul­fo­cap­sa sul­fe­xi­gens, a ma­ri­ne δ-pro­te­ob­ac­te­ri­um spe­cia­li­zed in dis­pro­por­tio­na­ting in­or­ga­nic sul­fur com­pounds. Stan­dards in Ge­no­mic Sci­en­ces 8(1), 58-68 (doi: 10.4056/​sigs.3777412). (2013)  PubMed  Full Text
Gomez-Pereira P. R., Hartmann M., Grob C., Tarran G. A., Martin A. P., Fuchs B. M., Scanlan D. J. and Zubkov M. V.: Com­pa­ra­ble light sti­mu­la­ti­on of or­ga­nic nut­ri­ent uptake by SAR11 and Prochlo­ro­coc­cus in the North At­lan­tic sub­tro­pi­cal gyre. ISME J. 7, 603-614 (2013)  PubMed  Full Text
Gomez-Pereira P. R., Kennaway G., Fuchs B. M., Tarran G. A. and Zubkov M. V.: Flow cy­to­metric iden­ti­fi­ca­ti­on of Ma­mi­el­la­les cla­de II in the Sou­thern At­lan­tic Oce­an. FEMS Mi­cro­bi­ol. Ecol. 83, 664-671 (2013)  PubMed
Hahnke R. L., Probian C., Fuchs B. M. and Harder J.: Va­ria­ti­ons in pel­agic bac­te­ri­al com­mu­nities in the North At­lan­tic Oce­an co­in­ci­de with wa­ter bo­dies. Aquat. Mi­crob. Ecol. 71, 131-140 (2013)  AME  Full Text
Kolinko S., Wanner G., Katzmann E., Kiemer F., Fuchs B. M. and Schüler D.: Clo­ne li­bra­ries and sin­gle cell ge­no­me am­pli­fi­ca­ti­on re­veal ex­ten­ded di­ver­si­ty of un­cul­ti­va­ted ma­gne­tot­ac­tic bac­te­ria from ma­ri­ne and freshwa­ter en­vi­ron­ments. Env. Mi­cro­bi­ol. 15, 1290-1301 (2013)  PubMed
Krupke A., Musat N., LaRoche J., Mohr W., Fuchs B. M., Amann R. I., Kuypers M. M.M.. and Foster R. A.: In situ iden­ti­fi­ca­ti­on and N2 and C fixa­ti­on ra­tes of un­cul­ti­va­ted cya­no­bac­te­ria po­pu­la­ti­ons. Syst. Appl. Mi­cro­bi­ol. 36, 259–271 (2013)  PubMed
Maignien L., Parkes R., Cragg B., Niemann H., Knittel K., Coulon S., Akhmetzhanov A., Boon N.: An­ae­ro­bic oxi­da­ti­on of me­tha­ne in hy­per­sa­li­ne cold seep se­di­ments. FEMS Mi­cro­bi­ol Ecol. 83, 214-231 (2013)  PubMed
Mann A.J., Hahnke R.L., Huang S., Werner J., Xing P., Barbeyron T., Hüttel B., Stüber K., Reinhardt R., Harder J., Glöckner F.O., Amann, R.I. and Teeling H.: The ge­no­me of the al­gae-as­so­cia­ted ma­ri­ne flav­o­bac­te­ri­um Formosa agariphila KMM 3901T re­veals a broad po­ten­ti­al for the de­gra­da­ti­on of al­gal po­ly­sac­cha­ri­des. Appl. En­vi­ron. Mi­cro­bi­ol. 79, 6813-6822 (2013)  PubMed  Full Text
Mußmann M., Augspurger C., Karwautz C., Ribot M.-R., Winkel M., Battin T. and Daims H.: Co­lo­niza­t­i­on of freshwa­ter bio­films by ni­tri­fy­ing bac­te­ria from ac­tiva­ted slud­ges. FEMS Mi­cro­bi­ol. Ecol. 85(1):104-15 (2013).  PubMed
Niemann H., Linke P., Knittel K., MacPherson E., Boetius A., Bruckmann W., Lavik G., Wallmann K., Schacht U., Omoregie E., Hilton D., Brown K., and Rehder G.: Me­tha­ne-car­bon flow into the bent­hic food web at cold seeps - a case stu­dy from the Cos­ta Rica sub­duc­tion zone. PLOS ONE 8: e74894 (2013)  PubMed  Full Text
Price R.E., Lesniewski R., Nitzsche K., Meyerdierks A., Saltikov C., Pichler T., and Amend, J.P.: Ar­chae­al and bac­te­ri­al di­ver­si­ty in an ar­se­nic-rich shal­low-sea hydro­ther­mal sys­tem un­der­go­ing pha­se se­pa­ra­ti­on. Front. Ext. Mi­cro­bi­ol. 4. (2013)  PubMed  Full Text
Ruff S. E., Arnds J., Knittel K., Amann R., Wegener G, Ramette A, Boetius, A: Mi­cro­bi­al Com­mu­nities of Deep-Sea Me­tha­ne Seeps at Hi­kur­an­gi Con­ti­nen­tal Mar­gin (New Ze­a­land). PLoS ONE 8: e72627 (2013)  PubMed  Full Text
van de Vossenberg J., Woebken D., Maalcke W.J., Wessels H.J.C.T., Dutilh B.E., Kartal B., Janssen-Megens E.M., Roeselers G., Yan J., Speth D., Gloerich J., Geerts W., van der Biezen E., Pluk W., Francoijs K.-J., Russ L., Lam P., Malfatti S.A., Tringe S.G., Haaijer S.C.M., op den Camp H.J.M., Stunnenberg H.G., Amann R., Kuypers M., and Jetten M.S.M.: The me­ta­ge­no­me of the ma­ri­ne anam­m­ox bac­te­ri­um Candidatus Scalindua profunda il­lus­tra­tes the ver­sa­ti­li­ty of this glo­bal­ly im­portant ni­tro­gen cy­cle bac­te­ri­um. En­vi­ron. Mi­cro­bi­ol. 15, 1275-1289 (2013)  PubMed  Full Text
von Netzer F., Pilloni G., Kleindienst S., Krüger, M., Knittel K., Gründger F., and Lueders T.: En­han­ced gene de­tec­tion as­says for fu­mara­te-ad­ding en­zy­mes al­low un­co­ver­ing an­ae­ro­bic hy­dro­c­ar­bon de­gra­ders in ter­restri­al and ma­ri­ne sys­tems. Appl. En­vi­ron. Mi­cro­bi­ol. 79, 543-552 (2013)  PubMed  Full Text
Winkel M., De Beer D., Lavik G., Peplies J. and Mußmann M.: Clo­se as­so­cia­ti­on of ac­tive ni­tri­fiers with Beggia­toa mats co­ver­ing deep-sea hydro­ther­mal se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy, on­line doi: 10.1111/​1462-2920.12316 (2013).  PubMed
Wöhlbrand L., Jacob J., Kube M., Mußmann M., Jarling R., Beck A., Amann R., Wilkes H., Reinhardt R., and Rabus R.: Com­ple­te ge­no­me and ca­t­a­bo­lic sub-pro­teo­mes of Des­ul­fo­ba­cu­la toluo­li­ca Tol2, a ma­ri­ne aro­ma­tic com­pound-de­gra­ding sul­fa­te re­du­cer. En­vi­ron. Mi­cro­bi­ol. 15, 1334-55 (2013)  PubMed
Yarza, P.; Sproer, C.; Swiderski, J.; Mrotzek, N.; Spring, S.; Tindall, B. J.; Gronow, S.; Pukall, R.; Klenk, H. P.; Lang, E.; Verbarg, S.; Crouch, A.; Lilburn, T.; Beck, B.; Unosson, C.; Cardew, S.; Moore, E. R. B.; Gomila, M.; Nakagawa, Y.; Janssens, D.; De Vos, P.; Peiren, J.; Suttels, T.; Clermont, D.; Bizet, C.; Sakamoto, M.; Iida, T.; Kudo, T.; Kosako, Y.; Oshida, Y.; Ohkuma, M.; Arahal, D. R.; Spieck, E.; Roeser, A. P.; Figge, M.; Park, D.; Buchanan, P.; Cifuentes, A.; Munoz, R.; Euzéby, J. P.; Schleifer, K. H.; Ludwig, W.; Amann, R.; Glöckner, F. O.; Rosselló-Móra, R.: Se­quen­cing Or­phan Spe­cies in­itia­ti­ve (SOS): fil­ling the gaps in the 16S rRNA gene se­quence da­ta­ba­se for all spe­cies with va­lid­ly pu­blis­hed na­mes. Sys­tem. Appl. Mi­cro­bi­ol. 36, 69-73 (2013)  PubMed
Diploma/M.Sc./B.Sc. theses
David Probandt: En­rich­ment of ab­un­dant sul­fa­te re­du­cers from ti­d­al se­di­ments. MSc the­sis wi­t­hin IM­PRS Mar­Mic. Uni­ver­si­ty of Bre­men. (2013)
Greta Reintjes: Pro­ka­ryo­tic pi­co­plank­ton com­mu­ni­ty ana­ly­sis al­song the At­lan­tic Me­r­idio­nal Tran­sect (AMT) 22. MSc the­sis wi­t­hin IM­PRS Mar­Mic. Uni­ver­si­ty of Bre­men. (2013)
Diploma/M.Sc./B.Sc. theses
Emil Ruff : Mi­cro­bi­al com­mu­ni­ty eco­lo­gy of ma­ri­ne me­tha­ne seeps. Fa­cul­ty 02: Bio­lo­gy/​Che­mis­try, Uni­ver­si­ty of Bre­men (2013)
Stefan Thiele: The role of spe­ci­fic mi­cro­bi­al com­mu­nities in the bio­lo­gi­cal car­bon pump. Fa­cul­ty 02: Bio­lo­gy/​Che­mis­try, Uni­ver­si­ty of Bre­men (2013)
Matthias Winkel: Che­mo­lit­ho­tro­phic and che­mo­he­te­ro­tro­phic mi­cro­or­ga­nisms in se­di­ment- and rock-hosted hydro­ther­mal sys­tems. Uni­ver­si­ty of Bre­men (2013)

Sym­bio­sis Group

Kleiner, M, Young JC, Shah M, VerBerkmoes NC, Dubilier N.: Me­ta­pro­teo­mics re­veals ab­un­dant trans­po­sa­se ex­pres­si­on in mu­tua­lis­tic en­do­sym­bi­onts. mBio. 4(3): e00223-13. doi: 10.1128/​mBio.00223-13 (2013)  PubMed  Full Text
Marcon, Y.; Sahling, H.; Borowski, C.; Ferreira, C. D.; Thal, J.; Bohrmann, G.: Me­gafau­nal dis­tri­bu­ti­on and as­sess­ment of to­tal me­tha­ne and sul­fi­de con­sump­ti­on by mus­sel beds at Me­nez Gwen hydro­ther­mal vent, ba­sed on geo-re­fe­ren­ced pho­to­mo­saics. Deep-sea re­se­arch part I-ocea­no­gra­phic re­se­arch pa­pers 75, 93-109. (2013)  ScienceDirect
McFall-Ngai M, Hadfield MG, Bosch TCG, Carey HV, Domazet-Loso T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.: Ani­mals in a bac­te­ri­al world, a new im­pe­ra­ti­ve for the life sci­en­ces. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces. 110(9): 3229-3236. doi: 10.1073/​pnas.1218525110 (2013)  PubMed  Full Text
Raggi L, Schubotz F, Hinrichs K-U, Dubilier N, Petersen JM.: Bac­te­ri­al sym­bi­onts of Ba­thy­mo­dio­lus mus­sels and Es­car­pia tu­be­worms from Cha­po­po­te, an asphalt seep in the sou­thern Gulf of Me­xi­co. En­vi­ron­men­tal Mi­cro­bio­lo­gy 15(7), 1969-1987 doi: 10.1111/​1462-2920.12051 (2013)  PubMed
Wentrup C, Wendeberg A, Huang JY, Borowski C, Dubilier N.: Shift from wi­de­s­pre­ad sym­bi­ont in­fec­tion of dif­fe­rent host tis­su­es to spa­ti­al­ly re­stric­ted co­lo­niza­t­i­on of gill cells in ear­ly life sta­ges of hydro­ther­mal vent mus­sels. ISME Jour­nal. 7: 1244-1247. doi: 10.1038/​is­mej.2013.5 (2013)  PubMed  Full Text

Mi­cro­bi­al Ge­no­mics Group

Arnone M. I., C. Verde, C. Bowler, F.O. Glöckner: A new Edi­to­ri­al Team and Scope for Ma­ri­ne Ge­no­mics. Ma­ri­ne Ge­no­mics, 5: p. III-IV. (2013)  Full Text
Bourlat S. J., A. Borja , J. Gilbert , M. I. Taylor , N. Davies , S. B. Weisberg, J. F. Griffith , T. Lettieri , D. Field , J. Benzie , F. O. Glöckner, N. Rodrí­guez-Ezpeleta , D. P. Faith, T. P. Bean , M. Obst: Ge­no­mics in ma­ri­ne mo­ni­to­ring: new op­por­tu­nities for as­ses­sing ma­ri­ne health sta­tus. Ma­ri­ne Pol­lu­ti­on Bul­le­tin, 74(1): p. 19-31. (2013)  PubMed
Buttigieg P. L., W. Hankeln, I. Kostadinov, R. Kottmann, P. Yilmaz, M. Beth Duhaime, F. O. Glöckner: Eco­ge­no­mic per­spec­tives on do­mains of un­k­nown func­tion: cor­re­la­ti­on-ba­sed ex­plo­ra­ti­on of ma­ri­ne me­ta­ge­no­mes. PLoS One, 8(3): p. e50869. (2013)  PubMed  Full Text
Frank, C.S.,C. Klockow, M. Richter, F.O. Glöckner, and J. Harder: Ge­ne­tic di­ver­si­ty of Rho­do­pi­rel­lu­la strains. An­to­nie Van Lee­uwen­ho­ek, 104(4): p. 547-50. (2013)  PubMed
Klindworth A., E. Pruesse, T. Schweer, J. Peplies, C. Quast, M. Horn and F. O. Glöckner: Eva­lua­ti­on of ge­ne­ral 16S ri­bo­so­mal RNA gene PCR pri­mers for clas­si­cal and next-ge­ne­ra­ti­on se­quen­cing-ba­sed di­ver­si­ty stu­dies. Nu­cleic Acids Re­se­arch, 41(1): p. e1. (2013)  PubMed  Full Text
Lloyd, K. G.; Schreiber, L.; Petersen, D. G.; Kjeldsen, K. U.; Lever, M. A.; Steen, A. D.; Stepanauskas, R.; Richter, M.; Kleindienst, S.; Lenk, S.; Schramm, A.; Jørgensen, B. B.: Pre­do­mi­nant ar­chaea in ma­ri­ne se­di­ments de­gra­de de­tri­tal pro­te­ins. Na­tu­re 496, 215-220. (2013)  PubMed
Mann A. J., R. L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F. O. Glöckner, R. I. Amann, H. Teeling: The ge­no­me of the al­gae-as­so­cia­ted ma­ri­ne flav­o­bac­te­ri­um Formosa agariphila KMM 3901T re­veals a broad po­ten­ti­al for the de­gra­da­ti­on of al­gal po­ly­sac­cha­ri­des. Appl En­vi­ron Mi­cro­bi­ol, on­line: p. PMID: 23995932. (2013)  PubMed  Full Text
Quast C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies and F. O. Glöckner: The SIL­VA ri­bo­so­mal RNA gene da­ta­ba­se pro­ject: im­pro­ved data pro­ces­sing and web-ba­sed tools. Nu­cleic Acids Re­se­arch, 41(D1): p. D590-D596. (2013)  PubMed  Full Text
Richter M., T. Richter-Heitmann, A. Klindworth, C. Wegner, C. S. Frank, J. Harder, F. O. Glöckner: Per­ma­nent draft ge­no­mes of the Rho­do­pi­rel­lu­la maio­ri­ca strain SM1. Ma­ri­ne Ge­no­mics, on­line. (2013)  PubMed
Richter M., T. Richter-Heitmann, A. Klindworth, C. Wegner, C. S. Frank, J. Harder, F. O. Glöckner: Per­ma­nent draft ge­no­mes of the three Rho­do­pi­rel­lu­la bal­ti­ca strains SH28, SW­K14 and WH47. Ma­ri­ne Ge­no­mics, on­line. (2013)  PubMed
Richter-Heitmann T., M. Richter, A. Klindworth, C. Wegner, C. S. Frank, F. O. Glöckner, J. Harder: Per­ma­nent draft ge­no­mes of the two Rho­do­pi­rel­lu­la eu­ro­paea strains 6C and SH398. Ma­ri­ne Ge­no­mics, on­line. (2013)  PubMed
Schriml L. and I. Mizrachi (co-hosts, local organizers), P. Sterk, D. Field, L. Hirschman, T. Tatusova, S. Sansone, J. Gilbert, D. Schindel, N. Davies, C. Meyer, F. Meyer, G. Garrity, L. Proctor, M.H. Medema, Y. Lan, A. Klindworth, F. O. Glöckner, T. Korves, A. Gonzalez, P. Dwayndt, M. Göker, A. Johnston, E. Pafilis, S. Schneider, K. Baker, C. Parr, G. Sut-ton, H.H. Creasy, N. Kyrpides, K. E. Wommack, P. L. Whetzel, D. Nasko, H. Lapp, T. Fujisawa, A. M. Phillippy, R. Kottman, J. A. Blake, J. Li, E. M. Glass, L. Schriml, I. Mizrachi, P. ten Hoopen, J. Gilbert, R. Knight, S. Holmes, C. Huttenhower, S. L. Salzberg, B. Ma, O. White: The 15th Ge­no­mic Stan­dards Con­sor­ti­um mee­ting. Stan­dards in Ge­no­mic Sci­en­ces, 8(1). (2013)  SIGS  Full Text
Wegner C., T. Richter-Heitmann, A. Klindworth, C. Klockow, M. Richter, T. Achstetter, F. O. Glöckner, J. Harder: Ex­pres­si­on of sul­fa­ta­ses in Rho­do­pi­rel­lu­la bal­ti­ca and the di­ver­si­ty of sul­fa­ta­ses in the ge­nus Rho­do­pi­rel­lu­la. Ma­ri­ne Ge­no­mics, 9: p. 51-61. (2013)  PubMed
Wegner C., M. Richter, T. Richter-Heitmann, A. Klindworth, C. S. Frank, F. O. Glöckner, J. Harder: Per­ma­nent draft ge­no­me of Rho­do­pi­rel­lu­la sal­len­ti­na SM41. Ma­ri­ne Ge­no­mics, on­line. (2013)  PubMed
Yarza P., C. Spröer, J. Swiderski, N. Mrotzek, S.Spring, B. J. Tindall, S. Gronow, R. Pukall, H. Klenk, E. Lang, S. Verbarg, A. Crouch, T  Lilburn, B. Beck, C. Unosson, S. Cardew, E. R.B. Moore, M. Gomila, Y. Nakagawa, D. Janssens, P. De Vos, J. Peiren, T. Suttels, D. Clermont, C. Bizet, M. Sakamoto, T. Iida, T. Kudo, Y. Kosako, Y. Oshida, M. Ohkuma, D. R. Arahal, E. Spieck, A. Pommerening Roeser, M. Figge, D. Park, P. Buchanan, A. Cifuentes, R. Munoz, J. P. Euzéby, K. Schleifer, W. Ludwig, R. Amann, F. O. Glöckner, R. Rosselló-Móra: Sequencing orphan species initiative (SOS): Fil­ling the gaps in the 16S rRNA gene se­quence da­ta­ba­se for all spe­cies with va­lid­ly pu­blis­hed na­mes. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy, 36(1): p. 69-73. (2013)  PubMed

Mi­cro­bi­al Ge­no­mics & Bio­in­for­ma­tics Group

Bondarev V., Richter M., Romano S., Piel P., A. Schwedt and H. N. Schulz-Vogt: The ge­nus Pseu­do­vi­brio con­ta­ins me­ta­bo­li­cal­ly ver­sa­ti­le bac­te­ria ad­ap­ted for sym­bio­sis. En­vi­ron Mi­cro­bi­ol, 15(7): p. 2095-113. (2013)  PubMed
Fernandez-Gomez B., M. Richter, M.Schüler, J. Pinhassi, S.G. Acinas, J. M. Gonzalez and C. Pedros-Alio: Eco­lo­gy of ma­ri­ne Bac­te­ro­ide­tes: a com­pa­ra­ti­ve ge­no­mics ap­proach. ISME J, 7(5): p. 1026-37. (2013)  PubMed
Golyshin P.N., J. Werner, T. N. Chernikova, H. Tran, M. Ferrer, M. M. Yakimov, H. Teeling, O. V. Golyshina, MAMBA Scientific Consortium: Ge­no­me Se­quence of Tha­l­as­so­li­tuus olei­vor­ans MIL-1 (DSM 14913T). Ge­no­me An­nounc, 1(2): p. e0014113. (2013)  PubMed
López-López A., M. Richter, A. Pena, J. Tamames, R. Rosselló-Móra: New in­sights into the ar­chae­al di­ver­si­ty of a hy­per­sa­li­ne mi­cro­bi­al mat ob­tai­ned by a me­ta­ge­no­mic ap­proach. Syst Appl Mi­cro­bi­ol, 36(3): p. 205-14. (2013)  PubMed
Novo M., A. Riesgo, A. Fernandez-Guerra, and G. Giribet: Phe­ro­mo­ne evo­lu­ti­on, re­pro­duc­tive ge­nes, and com­pa­ra­ti­ve tran­scrip­to­mics in me­di­ter­ra­ne­an ear­thworms (an­ne­l­i­da, oli­gochae­ta, hor­mo­gas­tri­dae). Mol Biol Evol, 30(7): p. 1614-29. (2013)  PubMed
Wilke A., E. M. Glass, D. Bartels, J. Bischof, D. Braithwaite, M. D′Souza,W. Gerlach, T. Harrison, K. Keegan, H. Matthews, R. Kottmann, T. Paczian, W. Tang,W. L. Trimble, P. Yilmaz, J. Wilkening, N. Desai, F.Meyer: A me­ta­ge­no­mics por­tal for a de­mo­cra­ti­zed se­quen­cing world. Me­thods En­zymol, 531: p. 487-523. (2013)  PubMed
B.Sc. and M.Sc. theses
Nilgün Koc: Aus­wahl und Er­pro­bung von Tools zur Un­ter­stüt­zung von evo­lu­tio­nä­rer Da­ten­bank­ent­wick­lung (2013)
Katrin Panzer: A com­ple­te view on the aqua­tic-de­ri­ved fun­gal phy­lo­ge­ny and eco­lo­gy: The im­pact of 18S rRNA se­quence in­for­ma­ti­on and con­textu­al data from pu­blic da­ta­ba­ses and a fun­gal cul­tu­re collec­tion. Uni­ver­si­ty of Bre­men. (2013)
Ph.D. theses
Alexander Mann: Bio­in­for­ma­tic ana­ly­ses of ge­no­mes, me­ta­ge­no­mes and ex­pres­si­on data of po­ly­sac­cha­ri­de-de­gra­ding ma­ri­ne mi­cro­bes. Ja­cobs Uni­ver­si­ty. (2013)

Ma­ri­ne Geo­che­mis­try Group

Bienhold C, Ristova PP, Wenzhöfer F, Dittmar T and Boetius A: How deep-sea wood falls sustain che­mo­syn­the­tic life. PLOS One 8 (1), e53590.(2013)  PubMed  Full Text
Jaffé R, Ding Y, Niggemann J, Vähätalo AV, Campbell J and Dittmar T: Glo­bal char­co­al mo­bi­liza­t­i­on from soils via dis­so­lu­ti­on and ri­veri­ne trans­port to the oce­ans. Sci­ence 340, 345-347. (2013)  PubMed
Riedel T, Zak D, Biester H and Dittmar T: Iron traps ter­restri­al­ly de­ri­ved dis­sol­ved or­ga­nic mat­ter at re­dox in­ter­faces. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces PNAS 110 (25), 10101-10105. (2013)  PubMed  Full Text
Rossel PE, Vähätalo AV, Witt M and Dittmar T: Mole­cu­lar com­po­si­ti­on of dis­sol­ved or­ga­nic mat­ter from a wet­land plant (Jun­cus ef­fu­sus) af­ter pho­to­che­mi­cal and mi­cro­bi­al de­com­po­si­ti­on (1.25 yr): Com­mon fea­tures with deep sea dis­sol­ved or­ga­nic mat­ter. Or­ga­nic Geo­che­mis­try 60, 62-71. (2013)  ScienceDirect
Roth V-N, Dittmar T, Gaupp R and Gleixner G: La­ti­tu­de and pH dri­ven trends in the mole­cu­lar com­po­si­ti­on of DOM across a north south tran­sect along the Ye­nis­ei Ri­ver. Geochi­mi­ca et Cos­mochi­mi­ca Acta 123, 93-105. (2013)  ScienceDirect
Å antl-Temkiv T, Finster K, Dittmar T, Hansen BM, Thyrhaug R, Woetmann Nielsen N and Gosewinkel Karlson U.: Hails­to­nes: a win­dow into the mi­cro­bi­al and che­mi­cal in­ven­to­ry of a storm cloud. PLOS One 8 (1), e53550. (2013)  PubMed  Full Text
Seidel M, Ruetters H, Rullkoetter J and Sass H: Phos­pha­te-free or­ni­t­hi­ne li­pid con­tents in Des­ul­fo­vi­brio spp re­spond to growth tem­pe­ra­tu­re. Or­ga­nic Geo­che­mis­try 59, 133-142. (2013)  ScienceDirect
Ward ND, Keil RG, Medeiros PM, Brito DC, Cunha AC, Dittmar T, Yager PL, Krusche AV and Richey JE: De­gra­da­ti­on of ter­restri­al­ly de­ri­ved ma­cro­mole­cu­les in the Ama­zon Ri­ver. Na­tu­re Geo­sci­ence 6, 530-533. (2013)  Nature
Waska H, Kim G and Kim GB: Com­pa­ri­son of S, Se, and Po-210 ac­cu­mu­la­ti­on pat­terns in com­mon squid To­daro­des pa­ci­fi­cus from the Yel­low Sea and East/​Ja­pan Sea. Oce­an Sci­ence Jour­nal 48, 215-224. (2013)  Springer  Full Text
B.Sc. and M.Sc. theses
Georg Meier: Mo­le­ku­la­re Cha­rak­te­ri­sie­rung von ge­lös­tem or­ga­ni­schem Ma­te­ri­al (DOM) aus Qual­le­n­in­ku­ba­tio­nen und bak­te­ri­el­ler Ab­bau des Qual­len­ex­su­dats. Uni­ver­si­ty of Ol­den­burg. (2013)
Sven Seidensticker: Mi­kro­bi­el­ler Ab­bau von na­tür­li­chem re­frak­tä­rem Ge­lös­tem Or­ga­ni­schen Ma­te­ri­al (DOM). Uni­ver­si­ty of Ol­den­burg. (2013)
Anika Maria Pohlabeln: Dis­sol­ved or­ga­nic sul­fur in the oce­an – A mass spec­tro­metric (FT-ICR-MS) in­ves­ti­ga­ti­on. Uni­ver­si­ty of Ol­den­burg. (2013)
Irina Köster: Short-term dy­na­mics of dis­sol­ved or­ga­nic mat­ter and bac­te­ri­al com­mu­nities in the open North Sea off Hel­go­land Is­land. Uni­ver­si­ty of Ol­den­burg. (2013)

HGF MPG Deep-Sea Eco­lo­gy and Tech­no­lo­gy Group

Assmy, P.; Ehn, J. K.; Fernandez-Mendez, M.; Hop, H.; Katlein, C.; Sundfjord, A.; Bluhm, K.; Daase, M.; Engel, A.; Fransson, A.; Granskog, M. A.; Hudson, S. R.; Kristiansen, S.; Nicolaus, M.; Peeken, I.; Renner, A. H. H.; Spreen, G.; Tatarek, A.; Wiktor, J.: Floa­ting Ice-Al­gal Ag­gre­ga­tes be­low Mel­ting Arc­tic Sea Ice. PLoS ONE 8, e76599 (2013)  PubMed  Full Text
Bayon G., Dupré S., Ponzevera E., Etoubleau J., Cheron S., Pierre C., Mascle J., Boetius A., de Lange G.: For­ma­ti­on of car­bo­na­te chim­neys in the Me­di­ter­ra­ne­an Sea lin­ked to deep-wa­ter oxy­gen de­p­le­ti­on. Na­tu­re Geo­sci­ence, doi:10.1038/​ngeo1888. (2013)  Nature
Bienhold, C., Pop Ristova, P., Wenzhöfer, F., Dittmar, T. and Boetius A.: How Deep-Sea Wood Falls Sustain Che­mo­syn­the­tic Life. PLoS One 81, e53590. (2013)  PubMed  Full Text
Boetius, A., S. Albrecht, K. Bakker, C. Bienhold, J. Felden, M. Fernández-Méndez, S. Hendricks, C. Katlein, C. Lalande, T. Krumpen, M. Nicolaus, I. Peeken, B. Rabe, A. Rogacheva, E. Rybakova, R. Somavilla, F. Wenzhöfer and the RV Polarstern ARK27-3-Shipboard Science Party: Ex­port of al­gal bio­mass from the mel­ting Arc­tic sea ice. Sci­ence 339( 6126), pp. 1430-1432. DOI: 10.1126/​sci­ence.1231346. (2013)  PubMed
Boetius A, Wenzhöfer F.: Seaf­loor oxy­gen con­sump­ti­on fu­el­led by me­tha­ne from cold seeps. Na­tu­re Geo­sci­ence doi:10.1038/​ngeo1926. (2013)  Nature  Full Text
Buttigieg, P. L., Hankeln, W., Kostadinov, I., Kottmann, R., Yilmaz, P., Duhaime, M. B., & Glöckner, F. O.: Eco­ge­no­mic Per­spec­tives on Do­mains of Un­k­nown Func­tion: Cor­re­la­ti­on-Ba­sed Ex­plo­ra­ti­on of Ma­ri­ne Me­ta­ge­no­mes. (I. Fried­berg, Ed.). PLoS ONE, 8(3), e50869. doi:10.1371/​jour­nal.pone.0050869. (2013)  PubMed  Full Text
Cherkasheva A, Bracher A, Melsheimer C, Köberle C, Gerdes R, Nöthig E-M, Bauerfeind E, Boetius A.: In­flu­ence of the phy­si­cal en­vi­ron­ment on po­lar phy­top­klank­ton blooms: a case stu­dy in the Fram Strait. Jour­nal of Ma­ri­ne Sys­tems. doi: 10.1016/​j.jmar­sys.2013.11.008. (2013)  ePic  Full Text
de Beer D., M. Haeckel, J. Neumann, G. Wegener, F. Inagaki, and A. Boetius: Sa­tu­ra­ted CO2 in­hi­bits mi­cro­bi­al pro­ces­ses in CO2-ven­ted deep-sea se­di­ments. Bio­geo­sci­en­ces 10:5639–5649. (2013)  Biogeosciences  Full Text
Felden, J., A. Lichtschlag, F.Wenzhöfer, D. de Beer, T. Feseker, P. Pop Ristova, G. de Lange, A. Boetius: Li­mi­ta­ti­ons of mi­cro­bi­al hy­dro­c­ar­bon de­gra­da­ti­on at the Amon Mud Vol­ca­no (Nile Deep Sea Fan). Bio­geo­sci­en­ces 10:3269–3283. (2013)  Biogeosciences  Full Text
Giovannelli, D.; Molari, M.; d'Errico, G.; Baldrighi, E.; Pala, C.; Manini, E.: Lar­ge-Sca­le Dis­tri­bu­ti­on and Ac­tivi­ty of Pro­ka­ryo­tes in Deep-Sea Sur­face Se­di­ments of the Me­di­ter­ra­ne­an Sea and the Ad­ja­cent At­lan­tic Oce­an. PLoS ONE 8, e72996. (2013)  PubMed  Full Text
Glud RN, Wenzhöfer F, Middelboe M, Oguri K Turnewitsch R, Canfield DE, Kitazato H.: High ra­tes of mi­cro­bi­al car­bon tur­no­ver in se­di­ments in the de­epest ocea­nic trench on Earth. Na­tu­re Geo­sci­ence, DOI: 10.1038/​NGEO1773. (2013)  Nature
Gobet A, Boetius A, Ramette A: Eco­lo­gi­cal co­he­rence of di­ver­si­ty pat­terns de­ri­ved from clas­si­cal fin­ger­prin­ting and Next Ge­ne­ra­ti­on Se­quen­cing tech­ni­ques. En­vi­ron­men­tal Mi­cro­bio­lo­gy. on­line. doi: 10.1111/​1462-2920.12308. (2013)  PubMed
Holtappels M, Glud RN, Donis D, Liu B, Hume A, Wenzhöfer F, Kuypers M.: Ef­fects of tran­si­ent bot­tom wa­ter cur­rents and oxy­gen con­cen­tra­ti­ons on bent­hic ex­ch­an­ge ra­tes as as­ses­sed by eddy cor­re­la­ti­on mea­su­re­ments. Jour­nal of Geo­phy­si­cal Re­se­arch – Oce­ans 118, 1–13, doi:10.1002/​jgrc.20112. (2013)  Wiley
Jacob M, Soltwedel T, Boetius A, Ramette A.: Bio­geo­gra­phy of Deep-Sea Bent­hic Bac­te­ria at Re­gio­nal Sca­le (LTER HAUS­GAR­TEN, Fram Strait, Arc­tic). PLoS ONE 8(9): e72779. doi:10.1371/​jour­nal.pone.0072779. (2013)  PubMed  Full Text
Mau, S.; Blees, J.; Helmke, E.; Niemann, H.; Damm, E.: Ver­ti­cal dis­tri­bu­ti­on of me­tha­ne oxi­da­ti­on and me­tha­notro­phic re­s­pon­se to ele­va­ted me­tha­ne con­cen­tra­ti­ons in stra­ti­fied wa­ters of the Arc­tic fjord Storf­jor­den (Sval­bard, Nor­way). Bio­geo­sci­en­ces 10, 6267-6278. (2013)  Biogeosciences  Full Text
Meyer S, Wegener G, Lloyd KG, Teske A, Boetius A, Ramette A: Mi­cro­bi­al ha­bi­tat con­nec­tivi­ty across spa­ti­al sca­les and hydro­ther­mal tem­pe­ra­tu­re gra­di­ents at Gu­ay­mas Ba­sin. Front. Mi­cro­bi­ol., 25 July 2013   doi: 10.3389/​fmi­cb.2013.00207. (2013)  PubMed  Full Text
Niemann H, Linke P, Knittel K, MacPherson E, Boetius A, Brückmann W, Larvik G, Wallmann K, Schacht U, Omoregie E, Hilton D, Brown K, Rehder G.: Me­tha­ne-car­bon flow into the bent­hic food web at cold seeps - a case stu­dy from the Cos­ta Rica sub­duc­tion zone. PLOS One, 8(11). doi: 10.1371/​jour­nal.pone.0074894. (2013)  PubMed  Full Text
Ruff, S.E., Arnds, J., Knittel, K., Amann, R.I., Wegener, G., Ramette, A., Boetius, A.: Mi­cro­bi­al com­mu­nities of deep sea me­tha­ne seeps at Hi­kur­an­gi con­ti­nen­tal mar­gin (New Ze­a­land). Plo­sO­ne, 8(9) e72627 (2013)  PubMed  Full Text
Schöttner, S., F. Hoffmann, P. Cárdenas, H.T. Rapp, A. Boetius and A. Ramette: Re­la­ti­ons­hips bet­ween host phy­lo­ge­ny, host type and bac­te­ri­al com­mu­ni­ty di­ver­si­ty in cold-wa­ter co­ral reef spon­ges. PLoS One, 8(2): e55505, doi:10.1371/​jour­nal.pone.0055505. (2013)  PubMed  Full Text
Soltwedel, T., Schauer, U., Boebel, O., Nöthig, E.-M., Bracher, A., Metfies, K., Schewe, I., Klages, M. and Boetius, A.: FRAM Fron­tiers in Arc­tic ma­ri­ne Mo­ni­to­ring: Per­ma­nent Ob­ser­va­tions in a Gate­way to the Arc­tic Oce­an. IEEE Pro­cee­dings OCE­ANS′13. (2013)  IEEEXplore
Stanev, E., Y. He, S. Grayek, A. Boetius: Oxy­gen dy­na­mics in the Black Sea as seen by Argo pro­filing floats. Geo­phy­si­cal Re­se­arch Let­ters 40, 1-6, doi:l 0.1 002/​grl.50606. (2013)  Wiley
Xie, S., Lipp, J.S., Wegener, G., Ferdelman, T. and Hinrichs, K.-U.: Tur­no­ver of mi­cro­bi­al li­pids in the deep bio­s­phe­re and growth of bent­hic ar­chae­al po­pu­la­ti­ons. Proc. Natl. Acad. Sc. USA, 110(15), 6010-6014. (2013)  PubMed  Full Text

Mi­cro­bi­al Fit­ness Group

Chen J, Strous M: De­ni­tri­fi­ca­ti­on and ae­ro­bic re­spi­ra­ti­on, hy­brid elec­tron trans­port chains and co-evo­lu­ti­on. Bio­chi­mi­ca et Bio­phy­si­ca Acta (BBA) – Bio­en­er­ge­tics 1827(2): 136-144. (2013)  PubMed
Chen, J.; Pan, X. C.; Chen, J. W.: Re­ge­ne­ra­ti­on of ac­tiva­ted car­bon sa­tu­ra­ted with odors by non-ther­mal plas­ma. Che­mo­s­phe­re 92, 725-730. (2013)  PubMed
Winkler, M. K. H.; Kleerebezem, R.; Strous, M.; Chandran, K.; van Loosdrecht, M. C. M.: Fac­tors in­flu­en­cing the den­si­ty of ae­ro­bic gra­nu­lar sludge. Ap­p­lied Mi­cro­bio­lo­gy and Bio­tech­no­lo­gy 97, 7459-7468. (2013)  PubMed

Ma­ri­ne Iso­to­pe Geo­che­mis­try Group

Bard, E., Menot, G., Rostek, F., Licari, L., Böning, P., Edwards, R.L., Cheng, H., Wang, Y., Heaton, T.J.: Ra­dio­c­ar­bon ca­li­bra­ti­on/​com­pa­ri­son re­cor­ds ba­sed on ma­ri­ne se­di­ments from the Pa­kis­tan and Ibe­ri­an mar­gins. Ra­dio­c­ar­bon 55, 1999-2019. (2013)  UAiR  Full Text
Beck, M., Böning, P., Schueckel, U., Stiehl, T., Schnetger, B., Rullkötter, J., Brumsack, H.-J.: Con­sis­tent as­sess­ment of tra­ce me­tal con­ta­mi­na­ti­on in sur­face se­di­ments and sus­pen­ded par­ti­cu­la­te mat­ter: A case stu­dy from the Jade Bay in NW Ger­ma­ny. Ma­ri­ne Pol­lu­ti­on Bul­le­tin, 70, 100-111. (2013)  PubMed
Ehlert, C., P. Grasse & M. Frank: Chan­ges in Si­li­ca­te Uti­li­sa­ti­on and Up­wel­ling In­ten­si­ty off Peru Sin­ce the Last Gla­ci­al Ma­xi­mum - In­sights from Si­li­con and Neo­dy­mi­um Iso­topes. Qua­tern­ary Sci­ence Re­views 72, 18-35, doi: 10.1016/​j.qua­sci­rev.2013.04.013. (2013)  ScienceDirect
Grasse, P., C. Ehlert & M. Frank: The in­flu­ence of wa­ter mass mi­xing on the dis­sol­ved si­li­con iso­to­pe com­po­si­ti­on of the Eas­tern Equa­to­ri­al Pa­ci­fic. Earth and Pla­ne­ta­ry Sci­ence Let­ters 380, 60-71. (2013)  NASA
Hu, D., Clift, P.D., Böning, P., Hannigan, R., Hillier, S., Blusztajn, J., Wan, S., Fuller, D.Q.: Ho­lo­ce­ne evo­lu­ti­on in wea­the­ring and ero­si­on pat­terns in the Pearl Ri­ver del­ta. Geo­che­mis­try Geo­phy­sics Geo­sys­tems 14, 2349-2368. (2013)  Wiley

Mi­cro­bi­al Ha­bi­tat Group

Amend, A. S.; Oliver, T. A.; Amaral-Zettler, L. A.; Boetius, A.; Fuhrman, J. A.; Horner-Devine, M. C.; Huse, S. M.; Welch, D. B. M.; Martiny, A. C.; Ramette, A.; Zinger, L.; Sogin, M. L.; Martiny, J. B. H.: Ma­cro­eco­lo­gi­cal pat­terns of ma­ri­ne bac­te­ria on a glo­bal sca­le. Jour­nal of Bio­geo­gra­phy 40, 800-811. (2013)  PubMed
Bienhold, C., P. Pop Ristova, F. Wenzhöfer, T. Dittmar and A. Boetius: How Deep-Sea Wood Falls Sustain Che­mo­syn­the­tic Life. PLoS ONE 8(1): e53590. doi:10.1371/​jour­nal.pone.0053590. (2013)  PubMed  Full Text
Boetius, A., J. Gutt, E. Helmke and B. Meyer: Le­ben im und un­ter dem Eis – zur Viel­falt des Le­bens in po­la­ren Le­bens­räu­men. In E. Beck (ed). Die Viel­falt des Le­bens, Wi­ley-VCH Wein­heim, pp. 149-160. (2013)
Boetius, A., S. Albrecht, K. Bakker, C. Bienhold, J. Felden, M. Fernández-Méndez, S. Hendricks, C. Katlein, C. Lalande, T. Krumpen, M. Nicolaus, I. Peeken, B. Rabe, A. Rogacheva, E. Rybakova, R. Somavilla, F. Wenzhöfer and the RV Polarstern ARK27-3-Shipboard Science Party: Ex­port of al­gal bio­mass from the mel­ting Arc­tic sea ice. Sci­ence 339(6126), 1430-1432. doi:10.1126/​sci­ence.1231346 (Ex­press On­line 14 Feb 2013).  PubMed
Boetius, A. and F. Wenzhöfer: Seaf­loor oxy­gen con­sump­ti­on fu­el­led by me­tha­ne from cold seeps. Na­tu­re Geo­sci­ence 6(9), 725-734. doi:10.1038/​ngeo1926. (2013)  Nature  Full Text
Buttigieg, P.L., W. Hankeln, I. Kostadinov, R. Kottmann, P. Yilmaz, M.B. Duhaime and F.O. Glöckner: Eco­ge­no­mic Per­spec­tives on Do­mains of Un­k­nown Func­tion: Cor­re­la­ti­on-Ba­sed Ex­plo­ra­ti­on of Ma­ri­ne Me­ta­ge­no­mes. (I. Fried­berg, Ed.). PLoS ONE 8(3), e50869. doi:10.1371/​jour­nal.pone.0050869. (2013)  PubMed  Full Text
Chennu, A., P. Färber, N. Volkenborn, M.A.A. Al-Najjar, F. Janssen, D. de Beer and L. Polerecky: Hy­per­spec­tral ima­ging of the mi­cro­s­ca­le dis­tri­bu­ti­on and dy­na­mics of mi­cro­phy­to­bent­hos in in­terti­dal se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods 11, 511-52. doi: 10.4319/​lom.2013.11.511. (2013)  ASLO  Full Text
Cherkasheva, A., A. Bracher, C. Melsheimer, C. Köberle, R. Gerdes, E.-M. Nöthig, E. Bauerfeind and A. Boetius: In­flu­ence of the phy­si­cal en­vi­ron­ment on po­lar phy­top­klank­ton blooms: a case stu­dy in the Fram Strait. Jour­nal of Ma­ri­ne Sys­tems. doi: 10.1016/​j.jmar­sys.2013.11.008. (2013)  ePic  Full Text
De Beer, D., M. Haeckel, J Neumann, G. Wegener, F. Inagaki and A. Boetius: Sa­tu­ra­ted CO2 in­hi­bits mi­cro­bi­al pro­ces­ses in CO2-ven­ted deep-sea se­di­ments. Bio­geo­sci­en­ces 10, 5639–5649. doi:10.5194/​bg-10-5639-2013. (2013)  Biogeosciences  Full Text
Deck, J., K. Barker, R. Beaman, P.L. Buttigieg, G. Dröge, R. Guralnick, C. Miller, E. Tuaman, Z. Murrell, C. Parr, B. Robbins, D. Schigel, B. Stucky, R. Walls, J. Wieczorek, N. Morrison and J. Wooley: Cla­ri­fy­ing Con­cepts and Terms in Bio­di­ver­si­ty In­for­ma­tics. Stan­dards in Ge­no­mic Sci­en­ces 8(2), 352–359. doi:10.4056/​sigs.3907833. (2013)  PubMed  Full Text
Felden, J., A. Lichtschlag, F. Wenzhöfer, D. de Beer, T. Feseker, P. Pop Ristova, G. de Lange and A. Boetius: Li­mi­ta­ti­ons of mi­cro­bi­al hy­dro­c­ar­bon de­gra­da­ti­on at the Amon Mud Vol­ca­no (Nile Deep Sea Fan). Bio­geo­sci­en­ces 10, 3269–3283. doi:bio­geo­sci­en­ces.net/​10/​3269/​2013/. (​2013)  Biogeosciences  Full Text
Glud, R.N., F. Wenzhöfer, M. Middelboe, K. Oguri, R. Turnewitsch, D.E. Canfield and H. Kitazato: High ra­tes of mi­cro­bi­al car­bon tur­no­ver in se­di­ments in the de­epest ocea­nic trench on Earth. Na­tu­re Geo­sci­ence 6, 284-288. doi: 10.1038/​NGEO1773. (2013)  Nature
Gobet, A., A. Boetius and A. Ramette: Eco­lo­gi­cal co­he­rence of di­ver­si­ty pat­terns de­ri­ved from clas­si­cal fin­ger­prin­ting and Next Ge­ne­ra­ti­on Se­quen­cing tech­ni­ques. En­vi­ron­men­tal Mi­cro­bio­lo­gy. doi: 10.1111/​1462-2920.12308. (2013)  PubMed
Holtappels, M., R.N. Glud, D. Donis, B. Liu, A. Hume, F. Wenzhöfer and M. Kuypers: Ef­fects of tran­si­ent bot­tom wa­ter cur­rents and oxy­gen con­cen­tra­ti­ons on bent­hic ex­ch­an­ge ra­tes as as­ses­sed by eddy cor­re­la­ti­on mea­su­re­ments. Jour­nal of Geo­phy­si­cal Re­se­arch – Oce­ans 118, 1–13. doi:10.1002/​jgrc.20112. (2013)  Wiley
Jacob, M., T. Soltwedel, A. Boetius and A. Ramette: Bio­geo­gra­phy of Deep-Sea Bent­hic Bac­te­ria at Re­gio­nal Sca­le (LTER HAUS­GAR­TEN, Fram Strait, Arc­tic). PLOS One 8(9):e72779. doi: 10.1371/​jour­nal.pone.0072779. (2013)  PubMed  Full Text
Meyer, S., G. Wegener, K.G. Lloyd, A. Teske, A. Boetius and A. Ramette:  Mi­cro­bi­al ha­bi­tat con­nec­tivi­ty across spa­ti­al sca­les and hydro­ther­mal tem­pe­ra­tu­re gra­di­ents at Gua­ya­mas Ba­sin. Fron­tiers Mi­cro­bio­lo­gy 4(207), 1-11. doi: 10.3389/​fmi­cb.2013.00207. (2013)  PubMed  Full Text
Niemann, H., P. Linke, K. Knittel, E. MacPherson, A. Boetius, W. Brückmann, G. Larvik, K. Wallmann, U. Schacht, E. Omoregie, D. Hilton, K. Brown and G. Rehder: Me­tha­ne-car­bon flow into the bent­hic food web at cold seeps - a case stu­dy from the Cos­ta Rica sub­duc­tion zone. PLOS One 8(11). doi: 10.1371/​jour­nal.pone.0074894. (2013)  PubMed  Full Text
Ruff, S.E., J. Arnds, K. Knittel, R. Amann, G. Wegener, A. Ramette and A. Boetius: Mi­cro­bi­al com­mu­nities of deep sea me­tha­ne seeps at Hi­kur­an­gi con­ti­nen­tal mar­gin (New Ze­a­land). PLOS One 8(9): e72627. doi:10.1371/​jour­nal.pone.0072627. (2013)  PubMed  Full Text
Schöttner, S., F. Hoffmann, P. Cárdenas, H.T. Rapp, A. Boetius and A. Ramette: Re­la­ti­ons­hips bet­ween host phy­lo­ge­ny, host type and bac­te­ri­al com­mu­ni­ty di­ver­si­ty in cold-wa­ter co­ral reef spon­ges. PLoS One 8(2): e55505. doi:10.1371/​jour­nal.pone.0055505. (2013)  PubMed  Full Text
Xie, S., J.S. Lipp, G. Wegener, T. Ferdelman and K.-U. Hinrichs: Tur­no­ver of mi­cro­bi­al li­pids in the deep bio­s­phe­re and growth of bent­hic ar­chae­al po­pu­la­ti­ons. Proc. Natl. Acad. Sc. USA, 110(15), 6010-6014. (2013)  PubMed  Full Text
Yanagawa, K., Y. Morono, D. de Beer, M. Haeckel, M. Sunamura, T. Futagami, T. Hoshino, T. Terada, K. Nakamura, T. Urabe, G. Rehder, A. Boetius and F. Inagaki: Me­ta­bo­li­cal­ly ac­tive mi­cro­bi­al com­mu­nities in ma­ri­ne se­di­ment un­der high-CO2 and low-pH ex­tre­mes. The ISME Jour­nal 7, 555-567. doi: 10.1038/​is­mej.2012.124 (2013)  PubMed  Full Text

Mar­Mic

Ph.D. theses
Emil Ruff: Mi­cro­bi­al com­mu­ni­ty eco­lo­gy of ma­ri­ne me­than seeps. Uni­ver­si­ty of Bre­men. (2013)
Matthias Winkel: Che­mo­lit­ho­tro­phic and che­mo­he­te­ro- tro­phic mi­cro­or­ga­nisms in se­di­ment - and rock-hosted hydro­ther­mal sys­tems. Uni­ver­si­ty of Bre­men.(2013)
Andreas Krupke: The role of unicel­lu­lar cya­no­bac­te­ria in ni­tro­gen fixa­ti­on and as­si­mi­la­ti­on in sub­tro­pi­cal ma­ri­ne wa­ters. Uni­ver­si­ty of Bre­men. (2013)
Sandra Havemeyer: Po­ly­phos­pha­te sto­r­a­ge in the fa­mi­ly Beggia­toaceae with a fo­cus on the spe­cies Beggia­toa alba. Uni­ver­si­ty of Bre­men. (2013)
Richard Hahnke: Cul­ti­va­ti­on of Flav­o­bac­te­ria and other in situ ab­un­dant bac­te­ria from the North Sea. Uni­ver­si­ty of Bre­men. (2013)
Ingrid Torres Monroy: Iden­ti­fi­ca­ti­on of bac­te­ri­al ge­nes re­qui­red for dia­tom-bac­te­ria in­ter­ac­tions. Ja­cobs Uni­ver­si­ty. (2013)
Stefan Thiele: The role of spe­ci­fic mi­cro­bi­al com­mu­nities in the bio­lo­gi­cal car­bon pump. Uni­ver­si­ty of Bre­men. (2013)
M.Sc. theses
Boyan Angelov: Mud Vol­ca­noes: A win­dow to the Deep Bio­s­phe­re. In­ves­ti­ga­ting suc­ces­si­on and func­tio­nal shifts in ma­ri­ne deep sub­sur­face mi­cro­bi­al com­mu­nities ex­po­sed to mud vol­ca­nism. Uni­ver­si­ty of Bre­men. (2013)
Jasmine Berg: Sin­gle-cell ana­ly­sis of sul­fur com­pounds in li­ving bac­te­ria by Ra­man spec­tro­sco­py. Uni­ver­si­ty of Bre­men. (2013)
Lennart Kappelmann: (Meta-)ge­no­mic ana­ly­sis of the di­ver­si­ty and the car­bo­hy­dra­te de­gra­da­ti­on po­ten­ti­al of the SAR92 cla­de du­ring a Dia­tom-in­du­ced Bac­te­rio­plank­ton bloom. Uni­ver­si­ty of Bre­men. (2013)
Clara Martinez Perez: Mi­cro­bi­al con­trol in P par­ti­cle for­ma­ti­on. Uni­ver­si­ty of Bre­men. (2013)
Beatriz Noriega Ortega: Bio­geo­che­mis­try of Dis­sol­ved Or­ga­nic Mat­ter (DOM) in the Dead Sea and its fresh wa­ter springs. Uni­ver­si­ty of Bre­men. (2013)
Laura Piepgras: The fate of am­mo­ni­um in an­ae­ro­bic oxi­da­ti­on of me­tha­ne. Uni­ver­si­ty of Bre­men. (2013)
David Probandt: En­rich­ment of ab­un­dant sul­fa­te re­du­cers from ti­d­al se­di­ments. Uni­ver­si­ty of Bre­men. (2013)
Greta Reintjes: Pi­co­plank­ton com­mu­ni­ty ana­ly­sis along the At­lan­tic Me­r­idio­nal Tran­sect AM­T22. Uni­ver­si­ty of Bre­men. (2013)
Miriam Sadowski: Mole­cu­lar cha­rac­te­riza­t­i­on of ec­to­sym­bio­tic bac­te­ria from ne­ma­to­des in a shal­low wa­ter sys­tem. Uni­ver­si­ty of Bre­men. (2013)
Ioulia Santi: Mi­cro­bi­al di­ver­si­ty and bio­geo­che­mis­try of Mi­los (Ae­ge­an Sea, Greece) hydro­ther­mal vents. Uni­ver­si­ty of Bre­men. (2013)
Brandon Seah: Bac­te­ri­al ec­to­sym­bi­onts of the ci­lia­te Ken­tro­pho­ros. Uni­ver­si­ty of Bre­men. (2013)
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