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Publications 2013
Publications 2013
Department of Biogeochemistry
| Allers E., Abed R.M.M., Wehrmann L.M., Wang T., Larsson A.I., Purser A., and de Beer D: Resistance of Lophelia pertusa to coverage by sediment and petroleum drill cuttings. Marine Pollution Bulletin 74, 132-140 (2013) PubMed |
| Bayraktarov E, Price, RE, Ferdelman TG, and Finster K: The pH and pCO2 dependence of sulfate reduction in shallow-sea hydrothermal CO2 – venting sediments (Milos Island, Greece). Frontiers Microbiology, 4, 111 doi: 10.3389/fmicb.2013.00111 (2013) PubMed Full Text |
| Brunner, B.; Contreras, S.; Lehmann, M. F.; Matantseva, O.; Rollog, M.; Kalvelage, T.; Klockgether, G.; Lavik, G.; Jetten, M. S. M.; Kartal, B.; Kuypers, M. M. M.: Nitrogen isotope effects induced by anammox bacteria. PNAS 110, 18994-18999. (2013) PubMed |
| Canion, A.; Prakash, O.; Green, S. J.; Jahnke, L.; Kuypers, M. M. M.; Kostka, J. E.: Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway). Environmental Microbiology 15, 1606-1618. (2013) PubMed |
| Contreras, S., P. Meister, B. Liu, X. Prieto-Mollarc, K.-U. Hinrichs, A. Khalili, T. G. Ferdelman, M. M. M. Kuypers, and B. B. Jørgensen: Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf. PNAS 110, 18098-18103 (2013) PubMed Full Text |
| Foster R., Sztejrenszus S. and Kuypers M.M.M.: Measuring carbon and N2 fixation in field populations of colonial and free-living unicellular Cyanobacteria using nanometer-scale Secondary Ion Mass Spectrometry. J. Phycol. 49, 3, 502-516. doi: 10.1111/jpy.12057. (2013) Wiley Full Text |
| Gutknecht, E.; Dadou, I.; Le Vu, B.; Cambon, G.; Sudre, J.; Garcon, V.; Machu, E.; Rixen, T.; Kock, A.; Flohr, A.; Paulmier, A.; Lavik, G.: Coupled physical/biogeochemical modeling including O-2-dependent processes in the Eastern Boundary Upwelling Systems: application in the Benguela. Biogeosciences 10, 3559-3591. (2013) Biogeosciences Full Text |
| Gutknecht, E.; Dadou, I.; Marchesiello, P.; Cambon, G.; Le Vu, B.; Sudre, J.; Garcon, V.; Machu, E.; Rixen, T.; Kock, A.; Flohr, A.; Paulmier, A.; Lavik, G.: Nitrogen transfers off Walvis Bay: a 3-D coupled physical/biogeochemical modeling approach in the Namibian upwelling system. Biogeosciences 10, 4117-4135. (2013) Biogeosciences Full Text |
| Heindel K, Birgel D, Brunner B, Thiel V, Wesphal H, Gischler E, Ziegenbalg SB, Cabioch G, Sjövall P, Peckmann J: Post-glacial microbialite formation in coral reefs of the Pacific, Atlantic, and Indian Oceans. Chem. Geol.,304-305:117-118. (2013) ScienceDirect |
| Heisterkamp, I. M.; Schramm, A.; Larsen, L. H.: Svenningsen, N. B.; Lavik, G.; de Beer, D.; Stief, P.: Shell biofilm-associated nitrous oxide production in marine molluscs: processes, precursors and relative importance. Environmental Microbiology 15, 1943-1955. (2013) PubMed |
| Holtappels, M., R. N. Glud, D. Donis, B. Liu, A. Hume, F. Wenzhöfer and M. M. M. Kuypers: Effects of transient bottom water currents and oxygen concentrations on benthic exchange rates as assessed by eddy correlation measurements. J. Geophys. Res. Oceans, 118, doi:10.1002/jgrc.20112. (2013) Wiley |
| Jaekel Ulrike ,Niculina Musat, Birgit Adam, Marcel Kuypers, Olav Grundmann and Florin Musat: Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps. The ISME Journal 7, 885-895. (2013) PubMed Full Text |
| Kalvelage T, Lavik G, Lam P, Contreras S, Arteaga L, Loescher CR, Oschlies A, Paulmier A, Stramma and Kuypers MMM.: Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone. Nature Geoscience 6, 228–234 doi:10.1038/ngeo1739 (2013) Nature |
| Kamyshny, A.; Oduro, H.; Mansaray, Z. F.; Farquhar, J.: Hydrogen Cyanide Accumulation and Transformations in Non-polluted Salt Marsh Sediments. Aquatic Geochemistry 19, 97-113. (2013) Springer |
| Könneke, M.; Kuever, J.; Galushko, A.; Jørgensen, B. B.: Desulfoconvexum algidum gen. nov., sp nov., a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment. International Journal of Systematic and Evolutionary Microbiology 63, 959-964. (2013) PubMed |
| Krupke A, Musat N, LaRoche N, Mohr W, Fuchs B, Amann R, Kuypers MMM and Foster R.: In situ identification and N2 and C fixation rates of uncultivated cyanobacteria populations. Systematic and Applied Microbiology 36, 259-271 doi.org/10.1016/j.syapm.2013.02.002 (2013) PubMed |
| Lichtschlag A, Kamyshny A, Ferdelman TG and deBeer D.: Intermediate sulfur oxidation state compounds in the euxinic surface sediments of the Dvurechenskii mud volcano (Black Sea). Geochem. Cosmochim. Acta 105: 130-145, doi.org/10.1016/j.gca.2012.11.025 (2013) ScienceDirect |
| Liu B., K. Kindler, A. Khalili: Dynamic solute release from marine aggregates. Limnology and Oceanography: Fluids and Environments, 2.doi:10.1215/21573689-2016772 (2013) LaO Full Text |
| Meister P., B. Liu, T.G. Ferdelman, B.B. Jørgensen , A. Khalili: Control of sulphate and methane distributions in marine sediments by organic matter reactivity. Geochem. Cosmochim. Acta, 104:183-193; doi.org/10.1016/j.gca.2012.11.011 (2013) ScienceDirect |
| Meister, P.: Two opposing effects of sulfate reduction on carbonate precipitation in normal marine, hypersaline, and alkaline environments. Geology, 41, 499-502. (2013) Geology |
| Meister, P.; Mckenzie, J. A.; Bernasconi, S. M.; Brack, P.: Dolomite formation in the shallow seas of the Alpine Triassic. Sedimentology 60, 270-291. (2013) Wiley |
| Miletto, M., P. L. E. Bodelier, T. G. Ferdelman, B. B. Jørgensen and H. J. Laanbroek: Effect of the aerenchymatous helophyte Glyceria maxima on the sulfate-reducing communities in two contrasting riparian grassland soils. Plant Soil, online, DOI 10.1007/s11104-013-1608-1. (2013) KNAW |
| Milucka, J.; Widdel, F.; Shima, S.: Immunological detection of enzymes for sulfate reduction in anaerobic methane-oxidizing consortia. Environmental Microbiology 15, 1561-1571. (2013) PubMed |
| Mohr, W., T. Vagner, M. M. M. Kuypers, M. Ackermann, M. and J. LaRoche: Resolution of Conflicting Signals at the Single-Cell Level in the Regulation of Cyanobacterial Photosynthesis and Nitrogen Fixation. PLOS ONE, 8 (6) e66060. (2013) PubMed Full Text |
| Monismith, S. G.; Herdman, L. M. M.; Ahmerkamp, S.; Hench, J. L.: Wave Transformation and Wave-Driven Flow across a Steep Coral Reef. Journal of physical Oceanography 43, 1356-1379. (2013) AMS Full Text |
| Müller IA, Brunner B, Breuer C, Coleman M, Bach W.: The oxygen isotope equilibrium fractionation between sulfite species and water. Geochim. Cosmochim. Acta 120, 562-581. (2013) ScienceDirect |
| Müller IA, Brunner B, Coleman M.: Isotopic evidence of the pivotal role of sulfite oxidation in shaping the oxygen isotope signature of sulfate. Chem Geol 354, 186-202. (2013) ScienceDirect |
| Owens, Jeremy D., Benjamin C. Gill, Hugh C. Jenkyns, Steven M. Bates, Silke Severmann, Marcel M. M. Kuypers, Richard G. Woodfine, and Timothy W. Lyons: Sulfur isotopes track the global extent and dynamics of euxinia during Cretaceous Oceanic Anoxic Event 2. PNAS, online (2013) PubMed |
| Schunck, H., G. Lavik, D. K. Desai, T. Großkopf, T. Kalvelage, C. R. Löscher, A. Paulmier, S. Contreras, H. Siegel, M. Holtappels, P. Rosenstiel, M. B. Schilhabel, M. Graco, R. A. Schmitz, M. M. M. Kuypers, J. LaRoche: Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy. PLoS ONE 8(8): e68661. doi:10.1371/journal.pone.0068661. (2013) PubMed Full Text |
| Scott, C.; Planavsky, N. J.; Dupont, C. L.; Kendall, B.; Gill, B. C.; Robbins, L. J.; Husband, K. F.; Arnold, G. L.; Wing, B. A.; Poulton, S. W.; Bekker, A.; Anbar, A. D.; Konhauser, K. O.; Lyons, T. W.: Bioavailability of zinc in marine systems through time. Nature Geoscience 6, 125-128. (2013) Nature |
| Sergeeva, N. G.; Mazlumyan, S. A.; Cagatay, N.; Lichtschlag, A.:Hypoxic Meiobenthic Communities of the Istanbul Strait's (Bosporus) Outlet Area of the Black Sea. Turkish Journal of Fisheries and Aquatic Sciences 13, 33-41. (2013) eprints |
| Sheik, A. R.; Brussaard, C. P. D.; Lavik, G.; Foster, R. A.; Musat, N.; Adam, B.; Kuypers, M. M. M.: Viral infection of Phaeocystis globosa impedes release of chitinous star-like structures: quantification using single cell approaches. Environmental Microbiology 15, 1441-1451. (2013) PubMed |
| Song, G. D., S. M. Liu, H. Marchant, M. M. M. Kuypers, and G. Lavik: Anammox, denitrification and dissimilatory nitrate reduction to ammonium in the East China Sea sediment. Biogeosciences 10, 6851–6864. (2013) Biogeosciences |
| Thang, N. M.; Bruchert, V.; Formolo, M.; Wegener, G.; Ginters, L.; Jorgensen, B. B.; Ferdelman, T. G.: The Impact of Sediment and Carbon Fluxes on the Biogeochemistry of Methane and Sulfur in Littoral Baltic Sea Sediments (Himmerfjarden, Sweden). Estuaries and Coasts 36, 98-115. (2013) Springer |
| Wehrmann LM, Arndt S, März C, Ferdelman TG, Brunner B.: The evolution of early diagenetic signals in Bering Sea subseafloor sediments in response to varying organic carbon deposition over the last 4.3 Ma. Geochem. Cosmochim. Acta 109, 175-196 doi.org/10.1016/j.gca.2013.01.02 (2013) ScienceDirect |
| Xie S, Lipp JS, Wegener G, Ferdelman, TG and Hinrichs KU.: Turnover of microbial lipids in the deep biosphere and growth of benthic archael populations. PNAS 110, 6010-6014 doi.10.1073/pnas.1218569110. (2013) PubMed Full Text |
| Charlotte Vavourakis: Tetrathionate turnover in marine sandy sediments. University of Amsterdam, NL (2013) |
| Inigo Müller: The pivotal role of sulfite species in shaping the oxygen isotope composition of sulfate: new insights from a stable isotope perspective. University of Bremen. (2013) |
| Sarah Sokoll: Transformation processes of nitrogen, phosphorus and iron in sub-euphotic waters and surface sediments. University of Bremen. (2013) |
| Thang Manh Nguyen: Biogeochemical controls on carbon and sulfur cycling in Baltic Sea sediments. University of Bremen. (2013) |
Microsensor Group
| Abed, R. M. M.; Lam, P.; de Beer, D., Stief, P.: High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman. ISME Journal 7, 1862-1875. (2013) PubMed |
| Behrendt, A.; de Beer, D.; Stief, P.: Vertical activity distribution of dissimilatory nitrate reduction in coastal marine sediments. Biogeosciences 10, 7509-7529. (2013) Biogeosciences Full Text |
| Long, M. H.; Berg, P.; de Beer, D.; Zieman, J. C.: In Situ Coral Reef Oxygen Metabolism: An Eddy Correlation Study. PLoS ONE 8, e58581. (2013) PubMed Full Text |
| Farías, M. E.; Rascovan, N.; Toneatti, D. M.; Albarracín, V. H.; Flores, M. R.; Poiré, D. G.; Collavino, M. M.; Aguilar, O. M.; Vazquez, M. P.; Polerecky: The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes. PLoS ONE 8, e53497. (2013) PubMed Full Text |
| Finke, N.; Hoehler, T. M.; Polerecky, L.; Buehring, B.; Thamdrup, B.: Competition for inorganic carbon between oxygenic and anoxygenic phototrophs in a hypersaline microbial mat, Guerrero Negro, Mexico. Environmental Microbiology 15, 1532–1550. (2013) PubMed |
| Kamp A., Stief P., Knappe J. de Beer D.: Response of the Ubiquitous Pelagic Diatom Thalassiosira weissflogii to Darkness and Anoxia. PLoS ONE 8: e82605. (2013) PubMed Full Text |
| Poulsen M, Kofoed MVW, Larsen LH, Schramm A, Stief P.: Chironomus plumosus larvae increase fluxes of denitrification products and diversity of nitrate-reducing bacteria in freshwater sediment. Systematic and Applied Microbiology. online (2013) PubMed Full Text |
| Stief, P.: Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications. Biogeosciences 10, 7829-7846. (2013) Biogeosciences Full Text |
| Stief, P.; Kamp, A.; de Beer, D.: Role of Diatoms in the Spatial-Temporal Distribution of Intracellular Nitrate in Intertidal Sediment. PLoS ONE 8, e73257. (2013) PubMed Full Text |
| You, X. L.; Sun, S.; Zhu, J. Q.; Li, Q.; Hu, W. X.; Dong, H. L.: Microbially mediated dolomite in Cambrian stromatolites from the Tarim Basin, north-west China: implications for the role of organic substrate on dolomite precipitation. Terra Nova 25, 387–395. (2013) Wiley |
| Bettina Buchmann: Oxygenic Photosynthesis in Cyanobacteria as a Protection Mechanism against Iron Precipitation. University of Oldenburg. (2013) |
| Folasade Adeboyejo: Nitrification process in the Dead Sea and its underwater springs; reality or mirage? University of Bremen. (2013) |
| Jan Knappe: The pelagic diatom Thalassiosira weissfogii is capable of dissimilatory nitrate reduction to ammonium (DNRA)Master Thesis. Linköping University, Sweden. (2013) |
| Lisa Schueler: Detection Methods and Environmental Abundance of Intron-Containing Bacterial SSU. University Hannover. (2013) |
| Kristina Stemmer: Shell formation and microsturcture of the ocean quahog Arctica islandica: Does ocean acidification matter? (2013) |
Department of Microbiology
| Beese, P.; Venzlaff, H.; Srinivasan, J.; Garrelfs, J.; Stratmann, M.; Mayrhofer, K.: Monitoring of anaerobic microbially influenced corrosion via electrochemical frequency modulation. Electrochimica Acta 105, 239-247. (2013) ScienceDirect |
| Bondoso, J., J. Harder, and O.M. Lage: rpoB gene as a novel marker to infer phylogeny in Planctomycetales. Antonie van Leeuwenhoek 104, 477-488. (2013) PubMed |
| Frank, C.S.,C. Klockow, M. Richter, F.O. Glöckner, and J. Harder: Genetic diversity of Rhodopirellula strains. Antonie van Leeuwenhoek 104, 547-550. (2013) PubMed |
| Lampert, K. P.; Blassmann, K.; Hissmann, K.; Schauer, J.; Shunula, P.; el Kharousy, Z.; Ngatunga, B. P.; Fricke, H.; Schartl, M.: Single-male paternity in coelacanths. Nature Communications 4, 2488. (2013) PubMed |
| Hahnke, R.L., and J. Harder: Phylogenetic diversity of Flavobacteria isolated from the North Sea on solid media. Systematic and Applied Microbiology 36, 497-504. (2013) PubMed |
| Hahnke, R.L., C. Probian, B.M. Fuchs, and J. Harder: Variations in pelagic bacterial communities in the North Atlantic Ocean coincide with water bodies. Aquatic Microbial Ecology 71, 131-140. (2013) AME Full Text |
| Klindworth, A., M. Richter, T. Richter-Heitmann, C.-E. Wegner, C.S. Frank, F.O. Glöckner, and J. Harder: Permanent draft genome of Rhodopirellula rubra SWK7. Marine Genomics 13(2014), 11-12 (2013) PubMed |
| Koßmehl, S., L. Wöhlbrand, K. Drüppel, C. Feenders, B. Blasius, and R. Rabus.: Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395. Proteomics 13, 2743–2760. (2013) PubMed |
| Lin, Y. S.; Lipp, J. S.; Elvert, M.; Holler, T.; Hinrichs, K. U.: Assessing production of the ubiquitous archaeal diglycosyl tetraether lipids in marine subsurface sediment using intramolecular stable isotope probing. Environmental Microbiology 15, 1634-1646. (2013) PubMed |
| Mann, A.J., R.L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F.O. Glöckner, R.I. Amann, and H. Teeling: The genome of the algae-associated marine flavobacterium Formosa Agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Applied and Environmental Microbiology 79, 6813-6822. (2013) PubMed Full Text |
| Siegert, M.; Taubert, M.; Seifert, J.; von Bergen-Tomm, M.; Basen, M.; Bastida, F.; Gehre, M.; Richnow, H. H.; Kruger, M.: The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition. FEMS 86, 231-245. (2013) PubMed |
| Spring, S., T. Riedel, C. Spröer, S. Yan, J. Harder, and B.M. Fuchs: Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans. BMC Microbiology 13:118. (2013) PubMed Full Text |
| Venzlaff, H.; Enning, D.; Srinivasan, J.; Mayrhofer, K. J. J.; Hassel, A. W.; Widdel, F.; Stratmann, M.: Accelerated cathodic reaction in microbial corrosion of iron due to direct electron uptake by sulfate-reducing bacteria. Corrosion Science 66, 88-96. (2013) ScienceDirect |
| Wegner, C.-E., T. Richter-Heitmann, A. Klindworth, C. Klockow, M. Richter, T. Achstetter, F.O. Glöckner, and J. Harder: Expression of sulfatases in Rhodopirellula baltica and the diversity of sulfatases in the genus Rhodopirellula. Marine Genomics 9, 51-61. (2013) PubMed |
| Zech, H.; Hensler, M.; Kossmehl, S.; Druppel, K.; Wohlbrand, L.; Trautwein, K.; Hulsch, R.; Maschmann, U.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients. Proteomics 13, 2851-2868. (2013) PubMed Full Text |
| Zech, H.; Hensler, M.; Kossmehl, S.; Druppel, K.; Wohlbrand, L.; Trautwein, K.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395. Proteomics 13, 2869-2885. (2013) PubMed |
| Andreas Heß: Die Linalool-Isomerase aus Thauera linaloolentis. University of Applied Sciences Emden/Leer (2013) |
| Deni Ribicic: Diversity of microorganisms in ballast water contaminated with diesel fuel. European M.Sc. Marine Biology and Conservation, University Gent (Supervisor: Jens Harder) (2013) |
| Irene Paschin: Charakterisierung der Linalool-Isomerase. University of Applied Sciences Lübeck (2013) |
| Linda Gloria Mahler: Physiologische Charakterisierung von Mutanten im Monoterpenstoffwechsel von Castellaniella defragrans. Beuth Hochschule für Technik (University of Applied Sciences) Berlin (2013) |
| Maria Papadatou: Bacterial diversity associated with anthropogenic particles and neuston in the surface layer of the East Atlantic Ocean. European M.Sc. Marine Biology and Conservation, University Gent |
| Sebastian Jordan: Genomische und physiologische analysen von Kandidatengenus OP3 Zellen aus methanogenen Anreicherungen. University of Applied Sciences Aachen (2013) |
| Richard L. Hahnke: Cultivation of Flavobacteria and other in situ abundant bacteria from the North Sea. Dissertation, University Bremen (2013) |
| Richard L. Hahnke: Cultivation of Flavobacteria and other in situ abundant bacteria from the North Sea. Dissertation, University Bremen (2013) |
Ecophysiology Group
| Bondarev, V., Richter, M., Romano, St., Piel, J., Schwedt, A. and Schulz-Vogt, H. N.: The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ. Microbiol. 15: 2095-2113. (2013) PubMed Full Text |
| Anne-Christin Kreutzmann: Electron donors and acceptors for members of the family Beggiatoaceae (2013) |
Molecular Ecology Group
| Allers E., Moraru C., Duhaime M.B., Beneze E., Solonenko N., Barrero Canosa J., Amann R., and Sullivan M.B.: Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses. Environ. Microbiol. 15, 2306-2318 (2013) PubMed Full Text |
| Bennke C. M., Neu T. R., Fuchs B. M. and Amann R.: Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms. Syst. Appl. Microbiol. 36, 417–425 (2013) PubMed |
| Finster K. W., Kjeldsen K., Kube M., Reinhardt R., Mußmann M., Amann R. and Schreiber L.: Complete genome sequence of Desulfocapsa sulfexigens, a marine δ-proteobacterium specialized in disproportionating inorganic sulfur compounds. Standards in Genomic Sciences 8(1), 58-68 (doi: 10.4056/sigs.3777412). (2013) PubMed Full Text |
| Gomez-Pereira P. R., Hartmann M., Grob C., Tarran G. A., Martin A. P., Fuchs B. M., Scanlan D. J. and Zubkov M. V.: Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. ISME J. 7, 603-614 (2013) PubMed Full Text |
| Gomez-Pereira P. R., Kennaway G., Fuchs B. M., Tarran G. A. and Zubkov M. V.: Flow cytometric identification of Mamiellales clade II in the Southern Atlantic Ocean. FEMS Microbiol. Ecol. 83, 664-671 (2013) PubMed |
| Hahnke R. L., Probian C., Fuchs B. M. and Harder J.: Variations in pelagic bacterial communities in the North Atlantic Ocean coincide with water bodies. Aquat. Microb. Ecol. 71, 131-140 (2013) AME Full Text |
| Kolinko S., Wanner G., Katzmann E., Kiemer F., Fuchs B. M. and Schüler D.: Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments. Env. Microbiol. 15, 1290-1301 (2013) PubMed |
| Krupke A., Musat N., LaRoche J., Mohr W., Fuchs B. M., Amann R. I., Kuypers M. M.M.. and Foster R. A.: In situ identification and N2 and C fixation rates of uncultivated cyanobacteria populations. Syst. Appl. Microbiol. 36, 259–271 (2013) PubMed |
| Maignien L., Parkes R., Cragg B., Niemann H., Knittel K., Coulon S., Akhmetzhanov A., Boon N.: Anaerobic oxidation of methane in hypersaline cold seep sediments. FEMS Microbiol Ecol. 83, 214-231 (2013) PubMed |
| Mann A.J., Hahnke R.L., Huang S., Werner J., Xing P., Barbeyron T., Hüttel B., Stüber K., Reinhardt R., Harder J., Glöckner F.O., Amann, R.I. and Teeling H.: The genome of the algae-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Appl. Environ. Microbiol. 79, 6813-6822 (2013) PubMed Full Text |
| Mußmann M., Augspurger C., Karwautz C., Ribot M.-R., Winkel M., Battin T. and Daims H.: Colonization of freshwater biofilms by nitrifying bacteria from activated sludges. FEMS Microbiol. Ecol. 85(1):104-15 (2013). PubMed |
| Niemann H., Linke P., Knittel K., MacPherson E., Boetius A., Bruckmann W., Lavik G., Wallmann K., Schacht U., Omoregie E., Hilton D., Brown K., and Rehder G.: Methane-carbon flow into the benthic food web at cold seeps - a case study from the Costa Rica subduction zone. PLOS ONE 8: e74894 (2013) PubMed Full Text |
| Price R.E., Lesniewski R., Nitzsche K., Meyerdierks A., Saltikov C., Pichler T., and Amend, J.P.: Archaeal and bacterial diversity in an arsenic-rich shallow-sea hydrothermal system undergoing phase separation. Front. Ext. Microbiol. 4. (2013) PubMed Full Text |
| Ruff S. E., Arnds J., Knittel K., Amann R., Wegener G, Ramette A, Boetius, A: Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand). PLoS ONE 8: e72627 (2013) PubMed Full Text |
| van de Vossenberg J., Woebken D., Maalcke W.J., Wessels H.J.C.T., Dutilh B.E., Kartal B., Janssen-Megens E.M., Roeselers G., Yan J., Speth D., Gloerich J., Geerts W., van der Biezen E., Pluk W., Francoijs K.-J., Russ L., Lam P., Malfatti S.A., Tringe S.G., Haaijer S.C.M., op den Camp H.J.M., Stunnenberg H.G., Amann R., Kuypers M., and Jetten M.S.M.: The metagenome of the marine anammox bacterium Candidatus Scalindua profunda illustrates the versatility of this globally important nitrogen cycle bacterium. Environ. Microbiol. 15, 1275-1289 (2013) PubMed Full Text |
| von Netzer F., Pilloni G., Kleindienst S., Krüger, M., Knittel K., Gründger F., and Lueders T.: Enhanced gene detection assays for fumarate-adding enzymes allow uncovering anaerobic hydrocarbon degraders in terrestrial and marine systems. Appl. Environ. Microbiol. 79, 543-552 (2013) PubMed Full Text |
| Winkel M., De Beer D., Lavik G., Peplies J. and Mußmann M.: Close association of active nitrifiers with Beggiatoa mats covering deep-sea hydrothermal sediments. Environmental Microbiology, online doi: 10.1111/1462-2920.12316 (2013). PubMed |
| Wöhlbrand L., Jacob J., Kube M., Mußmann M., Jarling R., Beck A., Amann R., Wilkes H., Reinhardt R., and Rabus R.: Complete genome and catabolic sub-proteomes of Desulfobacula toluolica Tol2, a marine aromatic compound-degrading sulfate reducer. Environ. Microbiol. 15, 1334-55 (2013) PubMed |
| Yarza, P.; Sproer, C.; Swiderski, J.; Mrotzek, N.; Spring, S.; Tindall, B. J.; Gronow, S.; Pukall, R.; Klenk, H. P.; Lang, E.; Verbarg, S.; Crouch, A.; Lilburn, T.; Beck, B.; Unosson, C.; Cardew, S.; Moore, E. R. B.; Gomila, M.; Nakagawa, Y.; Janssens, D.; De Vos, P.; Peiren, J.; Suttels, T.; Clermont, D.; Bizet, C.; Sakamoto, M.; Iida, T.; Kudo, T.; Kosako, Y.; Oshida, Y.; Ohkuma, M.; Arahal, D. R.; Spieck, E.; Roeser, A. P.; Figge, M.; Park, D.; Buchanan, P.; Cifuentes, A.; Munoz, R.; Euzéby, J. P.; Schleifer, K. H.; Ludwig, W.; Amann, R.; Glöckner, F. O.; Rosselló-Móra, R.: Sequencing Orphan Species initiative (SOS): filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. System. Appl. Microbiol. 36, 69-73 (2013) PubMed |
| David Probandt: Enrichment of abundant sulfate reducers from tidal sediments. MSc thesis within IMPRS MarMic. University of Bremen. (2013) |
| Greta Reintjes: Prokaryotic picoplankton community analysis alsong the Atlantic Meridional Transect (AMT) 22. MSc thesis within IMPRS MarMic. University of Bremen. (2013) |
| Emil Ruff : Microbial community ecology of marine methane seeps. Faculty 02: Biology/Chemistry, University of Bremen (2013) |
| Stefan Thiele: The role of specific microbial communities in the biological carbon pump. Faculty 02: Biology/Chemistry, University of Bremen (2013) |
| Matthias Winkel: Chemolithotrophic and chemoheterotrophic microorganisms in sediment- and rock-hosted hydrothermal systems. University of Bremen (2013) |
Symbiosis Group
| Kleiner, M, Young JC, Shah M, VerBerkmoes NC, Dubilier N.: Metaproteomics reveals abundant transposase expression in mutualistic endosymbionts. mBio. 4(3): e00223-13. doi: 10.1128/mBio.00223-13 (2013) PubMed Full Text |
| Marcon, Y.; Sahling, H.; Borowski, C.; Ferreira, C. D.; Thal, J.; Bohrmann, G.: Megafaunal distribution and assessment of total methane and sulfide consumption by mussel beds at Menez Gwen hydrothermal vent, based on geo-referenced photomosaics. Deep-sea research part I-oceanographic research papers 75, 93-109. (2013) ScienceDirect |
| McFall-Ngai M, Hadfield MG, Bosch TCG, Carey HV, Domazet-Loso T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.: Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences. 110(9): 3229-3236. doi: 10.1073/pnas.1218525110 (2013) PubMed Full Text |
| Raggi L, Schubotz F, Hinrichs K-U, Dubilier N, Petersen JM.: Bacterial symbionts of Bathymodiolus mussels and Escarpia tubeworms from Chapopote, an asphalt seep in the southern Gulf of Mexico. Environmental Microbiology 15(7), 1969-1987 doi: 10.1111/1462-2920.12051 (2013) PubMed |
| Wentrup C, Wendeberg A, Huang JY, Borowski C, Dubilier N.: Shift from widespread symbiont infection of different host tissues to spatially restricted colonization of gill cells in early life stages of hydrothermal vent mussels. ISME Journal. 7: 1244-1247. doi: 10.1038/ismej.2013.5 (2013) PubMed Full Text |
Microbial Genomics Group
| Arnone M. I., C. Verde, C. Bowler, F.O. Glöckner: A new Editorial Team and Scope for Marine Genomics. Marine Genomics, 5: p. III-IV. (2013) Full Text |
| Bourlat S. J., A. Borja , J. Gilbert , M. I. Taylor , N. Davies , S. B. Weisberg, J. F. Griffith , T. Lettieri , D. Field , J. Benzie , F. O. Glöckner, N. Rodríguez-Ezpeleta , D. P. Faith, T. P. Bean , M. Obst: Genomics in marine monitoring: new opportunities for assessing marine health status. Marine Pollution Bulletin, 74(1): p. 19-31. (2013) PubMed |
| Buttigieg P. L., W. Hankeln, I. Kostadinov, R. Kottmann, P. Yilmaz, M. Beth Duhaime, F. O. Glöckner: Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes. PLoS One, 8(3): p. e50869. (2013) PubMed Full Text |
| Frank, C.S.,C. Klockow, M. Richter, F.O. Glöckner, and J. Harder: Genetic diversity of Rhodopirellula strains. Antonie Van Leeuwenhoek, 104(4): p. 547-50. (2013) PubMed |
| Klindworth A., E. Pruesse, T. Schweer, J. Peplies, C. Quast, M. Horn and F. O. Glöckner: Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Research, 41(1): p. e1. (2013) PubMed Full Text |
| Lloyd, K. G.; Schreiber, L.; Petersen, D. G.; Kjeldsen, K. U.; Lever, M. A.; Steen, A. D.; Stepanauskas, R.; Richter, M.; Kleindienst, S.; Lenk, S.; Schramm, A.; Jørgensen, B. B.: Predominant archaea in marine sediments degrade detrital proteins. Nature 496, 215-220. (2013) PubMed |
| Mann A. J., R. L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F. O. Glöckner, R. I. Amann, H. Teeling: The genome of the algae-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Appl Environ Microbiol, online: p. PMID: 23995932. (2013) PubMed Full Text |
| Quast C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies and F. O. Glöckner: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(D1): p. D590-D596. (2013) PubMed Full Text |
| Richter M., T. Richter-Heitmann, A. Klindworth, C. Wegner, C. S. Frank, J. Harder, F. O. Glöckner: Permanent draft genomes of the Rhodopirellula maiorica strain SM1. Marine Genomics, online. (2013) PubMed |
| Richter M., T. Richter-Heitmann, A. Klindworth, C. Wegner, C. S. Frank, J. Harder, F. O. Glöckner: Permanent draft genomes of the three Rhodopirellula baltica strains SH28, SWK14 and WH47. Marine Genomics, online. (2013) PubMed |
| Richter-Heitmann T., M. Richter, A. Klindworth, C. Wegner, C. S. Frank, F. O. Glöckner, J. Harder: Permanent draft genomes of the two Rhodopirellula europaea strains 6C and SH398. Marine Genomics, online. (2013) PubMed |
| Schriml L. and I. Mizrachi (co-hosts, local organizers), P. Sterk, D. Field, L. Hirschman, T. Tatusova, S. Sansone, J. Gilbert, D. Schindel, N. Davies, C. Meyer, F. Meyer, G. Garrity, L. Proctor, M.H. Medema, Y. Lan, A. Klindworth, F. O. Glöckner, T. Korves, A. Gonzalez, P. Dwayndt, M. Göker, A. Johnston, E. Pafilis, S. Schneider, K. Baker, C. Parr, G. Sut-ton, H.H. Creasy, N. Kyrpides, K. E. Wommack, P. L. Whetzel, D. Nasko, H. Lapp, T. Fujisawa, A. M. Phillippy, R. Kottman, J. A. Blake, J. Li, E. M. Glass, L. Schriml, I. Mizrachi, P. ten Hoopen, J. Gilbert, R. Knight, S. Holmes, C. Huttenhower, S. L. Salzberg, B. Ma, O. White: The 15th Genomic Standards Consortium meeting. Standards in Genomic Sciences, 8(1). (2013) SIGS Full Text |
| Wegner C., T. Richter-Heitmann, A. Klindworth, C. Klockow, M. Richter, T. Achstetter, F. O. Glöckner, J. Harder: Expression of sulfatases in Rhodopirellula baltica and the diversity of sulfatases in the genus Rhodopirellula. Marine Genomics, 9: p. 51-61. (2013) PubMed |
| Wegner C., M. Richter, T. Richter-Heitmann, A. Klindworth, C. S. Frank, F. O. Glöckner, J. Harder: Permanent draft genome of Rhodopirellula sallentina SM41. Marine Genomics, online. (2013) PubMed |
| Yarza P., C. Spröer, J. Swiderski, N. Mrotzek, S.Spring, B. J. Tindall, S. Gronow, R. Pukall, H. Klenk, E. Lang, S. Verbarg, A. Crouch, T Lilburn, B. Beck, C. Unosson, S. Cardew, E. R.B. Moore, M. Gomila, Y. Nakagawa, D. Janssens, P. De Vos, J. Peiren, T. Suttels, D. Clermont, C. Bizet, M. Sakamoto, T. Iida, T. Kudo, Y. Kosako, Y. Oshida, M. Ohkuma, D. R. Arahal, E. Spieck, A. Pommerening Roeser, M. Figge, D. Park, P. Buchanan, A. Cifuentes, R. Munoz, J. P. Euzéby, K. Schleifer, W. Ludwig, R. Amann, F. O. Glöckner, R. Rosselló-Móra: Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Systematic and Applied Microbiology, 36(1): p. 69-73. (2013) PubMed |
Microbial Genomics & Bioinformatics Group
| Bondarev V., Richter M., Romano S., Piel P., A. Schwedt and H. N. Schulz-Vogt: The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ Microbiol, 15(7): p. 2095-113. (2013) PubMed |
| Fernandez-Gomez B., M. Richter, M.Schüler, J. Pinhassi, S.G. Acinas, J. M. Gonzalez and C. Pedros-Alio: Ecology of marine Bacteroidetes: a comparative genomics approach. ISME J, 7(5): p. 1026-37. (2013) PubMed |
| Golyshin P.N., J. Werner, T. N. Chernikova, H. Tran, M. Ferrer, M. M. Yakimov, H. Teeling, O. V. Golyshina, MAMBA Scientific Consortium: Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T). Genome Announc, 1(2): p. e0014113. (2013) PubMed |
| López-López A., M. Richter, A. Pena, J. Tamames, R. Rosselló-Móra: New insights into the archaeal diversity of a hypersaline microbial mat obtained by a metagenomic approach. Syst Appl Microbiol, 36(3): p. 205-14. (2013) PubMed |
| Novo M., A. Riesgo, A. Fernandez-Guerra, and G. Giribet: Pheromone evolution, reproductive genes, and comparative transcriptomics in mediterranean earthworms (annelida, oligochaeta, hormogastridae). Mol Biol Evol, 30(7): p. 1614-29. (2013) PubMed |
| Wilke A., E. M. Glass, D. Bartels, J. Bischof, D. Braithwaite, M. D′Souza,W. Gerlach, T. Harrison, K. Keegan, H. Matthews, R. Kottmann, T. Paczian, W. Tang,W. L. Trimble, P. Yilmaz, J. Wilkening, N. Desai, F.Meyer: A metagenomics portal for a democratized sequencing world. Methods Enzymol, 531: p. 487-523. (2013) PubMed |
| Nilgün Koc: Auswahl und Erprobung von Tools zur Unterstützung von evolutionärer Datenbankentwicklung (2013) |
| Katrin Panzer: A complete view on the aquatic-derived fungal phylogeny and ecology: The impact of 18S rRNA sequence information and contextual data from public databases and a fungal culture collection. University of Bremen. (2013) |
| Alexander Mann: Bioinformatic analyses of genomes, metagenomes and expression data of polysaccharide-degrading marine microbes. Jacobs University. (2013) |
Marine Geochemistry Group
| Bienhold C, Ristova PP, Wenzhöfer F, Dittmar T and Boetius A: How deep-sea wood falls sustain chemosynthetic life. PLOS One 8 (1), e53590.(2013) PubMed Full Text |
| Jaffé R, Ding Y, Niggemann J, Vähätalo AV, Campbell J and Dittmar T: Global charcoal mobilization from soils via dissolution and riverine transport to the oceans. Science 340, 345-347. (2013) PubMed |
| Riedel T, Zak D, Biester H and Dittmar T: Iron traps terrestrially derived dissolved organic matter at redox interfaces. Proceedings of the National Academy of Sciences PNAS 110 (25), 10101-10105. (2013) PubMed Full Text |
| Rossel PE, Vähätalo AV, Witt M and Dittmar T: Molecular composition of dissolved organic matter from a wetland plant (Juncus effusus) after photochemical and microbial decomposition (1.25 yr): Common features with deep sea dissolved organic matter. Organic Geochemistry 60, 62-71. (2013) ScienceDirect |
| Roth V-N, Dittmar T, Gaupp R and Gleixner G: Latitude and pH driven trends in the molecular composition of DOM across a north south transect along the Yenisei River. Geochimica et Cosmochimica Acta 123, 93-105. (2013) ScienceDirect |
| Å antl-Temkiv T, Finster K, Dittmar T, Hansen BM, Thyrhaug R, Woetmann Nielsen N and Gosewinkel Karlson U.: Hailstones: a window into the microbial and chemical inventory of a storm cloud. PLOS One 8 (1), e53550. (2013) PubMed Full Text |
| Seidel M, Ruetters H, Rullkoetter J and Sass H: Phosphate-free ornithine lipid contents in Desulfovibrio spp respond to growth temperature. Organic Geochemistry 59, 133-142. (2013) ScienceDirect |
| Ward ND, Keil RG, Medeiros PM, Brito DC, Cunha AC, Dittmar T, Yager PL, Krusche AV and Richey JE: Degradation of terrestrially derived macromolecules in the Amazon River. Nature Geoscience 6, 530-533. (2013) Nature |
| Waska H, Kim G and Kim GB: Comparison of S, Se, and Po-210 accumulation patterns in common squid Todarodes pacificus from the Yellow Sea and East/Japan Sea. Ocean Science Journal 48, 215-224. (2013) Springer Full Text |
| Georg Meier: Molekulare Charakterisierung von gelöstem organischem Material (DOM) aus Qualleninkubationen und bakterieller Abbau des Quallenexsudats. University of Oldenburg. (2013) |
| Sven Seidensticker: Mikrobieller Abbau von natürlichem refraktärem Gelöstem Organischen Material (DOM). University of Oldenburg. (2013) |
| Anika Maria Pohlabeln: Dissolved organic sulfur in the ocean – A mass spectrometric (FT-ICR-MS) investigation. University of Oldenburg. (2013) |
| Irina Köster: Short-term dynamics of dissolved organic matter and bacterial communities in the open North Sea off Helgoland Island. University of Oldenburg. (2013) |
HGF MPG Deep-Sea Ecology and Technology Group
| Assmy, P.; Ehn, J. K.; Fernandez-Mendez, M.; Hop, H.; Katlein, C.; Sundfjord, A.; Bluhm, K.; Daase, M.; Engel, A.; Fransson, A.; Granskog, M. A.; Hudson, S. R.; Kristiansen, S.; Nicolaus, M.; Peeken, I.; Renner, A. H. H.; Spreen, G.; Tatarek, A.; Wiktor, J.: Floating Ice-Algal Aggregates below Melting Arctic Sea Ice. PLoS ONE 8, e76599 (2013) PubMed Full Text |
| Bayon G., Dupré S., Ponzevera E., Etoubleau J., Cheron S., Pierre C., Mascle J., Boetius A., de Lange G.: Formation of carbonate chimneys in the Mediterranean Sea linked to deep-water oxygen depletion. Nature Geoscience, doi:10.1038/ngeo1888. (2013) Nature |
| Bienhold, C., Pop Ristova, P., Wenzhöfer, F., Dittmar, T. and Boetius A.: How Deep-Sea Wood Falls Sustain Chemosynthetic Life. PLoS One 81, e53590. (2013) PubMed Full Text |
| Boetius, A., S. Albrecht, K. Bakker, C. Bienhold, J. Felden, M. Fernández-Méndez, S. Hendricks, C. Katlein, C. Lalande, T. Krumpen, M. Nicolaus, I. Peeken, B. Rabe, A. Rogacheva, E. Rybakova, R. Somavilla, F. Wenzhöfer and the RV Polarstern ARK27-3-Shipboard Science Party: Export of algal biomass from the melting Arctic sea ice. Science 339( 6126), pp. 1430-1432. DOI: 10.1126/science.1231346. (2013) PubMed |
| Boetius A, Wenzhöfer F.: Seafloor oxygen consumption fuelled by methane from cold seeps. Nature Geoscience doi:10.1038/ngeo1926. (2013) Nature Full Text |
| Buttigieg, P. L., Hankeln, W., Kostadinov, I., Kottmann, R., Yilmaz, P., Duhaime, M. B., & Glöckner, F. O.: Ecogenomic Perspectives on Domains of Unknown Function: Correlation-Based Exploration of Marine Metagenomes. (I. Friedberg, Ed.). PLoS ONE, 8(3), e50869. doi:10.1371/journal.pone.0050869. (2013) PubMed Full Text |
| Cherkasheva A, Bracher A, Melsheimer C, Köberle C, Gerdes R, Nöthig E-M, Bauerfeind E, Boetius A.: Influence of the physical environment on polar phytopklankton blooms: a case study in the Fram Strait. Journal of Marine Systems. doi: 10.1016/j.jmarsys.2013.11.008. (2013) ePic Full Text |
| de Beer D., M. Haeckel, J. Neumann, G. Wegener, F. Inagaki, and A. Boetius: Saturated CO2 inhibits microbial processes in CO2-vented deep-sea sediments. Biogeosciences 10:5639–5649. (2013) Biogeosciences Full Text |
| Felden, J., A. Lichtschlag, F.Wenzhöfer, D. de Beer, T. Feseker, P. Pop Ristova, G. de Lange, A. Boetius: Limitations of microbial hydrocarbon degradation at the Amon Mud Volcano (Nile Deep Sea Fan). Biogeosciences 10:3269–3283. (2013) Biogeosciences Full Text |
| Giovannelli, D.; Molari, M.; d'Errico, G.; Baldrighi, E.; Pala, C.; Manini, E.: Large-Scale Distribution and Activity of Prokaryotes in Deep-Sea Surface Sediments of the Mediterranean Sea and the Adjacent Atlantic Ocean. PLoS ONE 8, e72996. (2013) PubMed Full Text |
| Glud RN, Wenzhöfer F, Middelboe M, Oguri K Turnewitsch R, Canfield DE, Kitazato H.: High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth. Nature Geoscience, DOI: 10.1038/NGEO1773. (2013) Nature |
| Gobet A, Boetius A, Ramette A: Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques. Environmental Microbiology. online. doi: 10.1111/1462-2920.12308. (2013) PubMed |
| Holtappels M, Glud RN, Donis D, Liu B, Hume A, Wenzhöfer F, Kuypers M.: Effects of transient bottom water currents and oxygen concentrations on benthic exchange rates as assessed by eddy correlation measurements. Journal of Geophysical Research – Oceans 118, 1–13, doi:10.1002/jgrc.20112. (2013) Wiley |
| Jacob M, Soltwedel T, Boetius A, Ramette A.: Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic). PLoS ONE 8(9): e72779. doi:10.1371/journal.pone.0072779. (2013) PubMed Full Text |
| Mau, S.; Blees, J.; Helmke, E.; Niemann, H.; Damm, E.: Vertical distribution of methane oxidation and methanotrophic response to elevated methane concentrations in stratified waters of the Arctic fjord Storfjorden (Svalbard, Norway). Biogeosciences 10, 6267-6278. (2013) Biogeosciences Full Text |
| Meyer S, Wegener G, Lloyd KG, Teske A, Boetius A, Ramette A: Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guaymas Basin. Front. Microbiol., 25 July 2013 doi: 10.3389/fmicb.2013.00207. (2013) PubMed Full Text |
| Niemann H, Linke P, Knittel K, MacPherson E, Boetius A, Brückmann W, Larvik G, Wallmann K, Schacht U, Omoregie E, Hilton D, Brown K, Rehder G.: Methane-carbon flow into the benthic food web at cold seeps - a case study from the Costa Rica subduction zone. PLOS One, 8(11). doi: 10.1371/journal.pone.0074894. (2013) PubMed Full Text |
| Ruff, S.E., Arnds, J., Knittel, K., Amann, R.I., Wegener, G., Ramette, A., Boetius, A.: Microbial communities of deep sea methane seeps at Hikurangi continental margin (New Zealand). PlosOne, 8(9) e72627 (2013) PubMed Full Text |
| Schöttner, S., F. Hoffmann, P. Cárdenas, H.T. Rapp, A. Boetius and A. Ramette: Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges. PLoS One, 8(2): e55505, doi:10.1371/journal.pone.0055505. (2013) PubMed Full Text |
| Soltwedel, T., Schauer, U., Boebel, O., Nöthig, E.-M., Bracher, A., Metfies, K., Schewe, I., Klages, M. and Boetius, A.: FRAM Frontiers in Arctic marine Monitoring: Permanent Observations in a Gateway to the Arctic Ocean. IEEE Proceedings OCEANS′13. (2013) IEEEXplore |
| Stanev, E., Y. He, S. Grayek, A. Boetius: Oxygen dynamics in the Black Sea as seen by Argo profiling floats. Geophysical Research Letters 40, 1-6, doi:l 0.1 002/grl.50606. (2013) Wiley |
| Xie, S., Lipp, J.S., Wegener, G., Ferdelman, T. and Hinrichs, K.-U.: Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations. Proc. Natl. Acad. Sc. USA, 110(15), 6010-6014. (2013) PubMed Full Text |
Microbial Fitness Group
| Chen J, Strous M: Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution. Biochimica et Biophysica Acta (BBA) – Bioenergetics 1827(2): 136-144. (2013) PubMed |
| Chen, J.; Pan, X. C.; Chen, J. W.: Regeneration of activated carbon saturated with odors by non-thermal plasma. Chemosphere 92, 725-730. (2013) PubMed |
| Winkler, M. K. H.; Kleerebezem, R.; Strous, M.; Chandran, K.; van Loosdrecht, M. C. M.: Factors influencing the density of aerobic granular sludge. Applied Microbiology and Biotechnology 97, 7459-7468. (2013) PubMed |
Marine Isotope Geochemistry Group
| Bard, E., Menot, G., Rostek, F., Licari, L., Böning, P., Edwards, R.L., Cheng, H., Wang, Y., Heaton, T.J.: Radiocarbon calibration/comparison records based on marine sediments from the Pakistan and Iberian margins. Radiocarbon 55, 1999-2019. (2013) UAiR Full Text |
| Beck, M., Böning, P., Schueckel, U., Stiehl, T., Schnetger, B., Rullkötter, J., Brumsack, H.-J.: Consistent assessment of trace metal contamination in surface sediments and suspended particulate matter: A case study from the Jade Bay in NW Germany. Marine Pollution Bulletin, 70, 100-111. (2013) PubMed |
| Ehlert, C., P. Grasse & M. Frank: Changes in Silicate Utilisation and Upwelling Intensity off Peru Since the Last Glacial Maximum - Insights from Silicon and Neodymium Isotopes. Quaternary Science Reviews 72, 18-35, doi: 10.1016/j.quascirev.2013.04.013. (2013) ScienceDirect |
| Grasse, P., C. Ehlert & M. Frank: The influence of water mass mixing on the dissolved silicon isotope composition of the Eastern Equatorial Pacific. Earth and Planetary Science Letters 380, 60-71. (2013) NASA |
| Hu, D., Clift, P.D., Böning, P., Hannigan, R., Hillier, S., Blusztajn, J., Wan, S., Fuller, D.Q.: Holocene evolution in weathering and erosion patterns in the Pearl River delta. Geochemistry Geophysics Geosystems 14, 2349-2368. (2013) Wiley |
Microbial Habitat Group
| Amend, A. S.; Oliver, T. A.; Amaral-Zettler, L. A.; Boetius, A.; Fuhrman, J. A.; Horner-Devine, M. C.; Huse, S. M.; Welch, D. B. M.; Martiny, A. C.; Ramette, A.; Zinger, L.; Sogin, M. L.; Martiny, J. B. H.: Macroecological patterns of marine bacteria on a global scale. Journal of Biogeography 40, 800-811. (2013) PubMed |
| Bienhold, C., P. Pop Ristova, F. Wenzhöfer, T. Dittmar and A. Boetius: How Deep-Sea Wood Falls Sustain Chemosynthetic Life. PLoS ONE 8(1): e53590. doi:10.1371/journal.pone.0053590. (2013) PubMed Full Text |
| Boetius, A., J. Gutt, E. Helmke and B. Meyer: Leben im und unter dem Eis – zur Vielfalt des Lebens in polaren Lebensräumen. In E. Beck (ed). Die Vielfalt des Lebens, Wiley-VCH Weinheim, pp. 149-160. (2013) |
| Boetius, A., S. Albrecht, K. Bakker, C. Bienhold, J. Felden, M. Fernández-Méndez, S. Hendricks, C. Katlein, C. Lalande, T. Krumpen, M. Nicolaus, I. Peeken, B. Rabe, A. Rogacheva, E. Rybakova, R. Somavilla, F. Wenzhöfer and the RV Polarstern ARK27-3-Shipboard Science Party: Export of algal biomass from the melting Arctic sea ice. Science 339(6126), 1430-1432. doi:10.1126/science.1231346 (Express Online 14 Feb 2013). PubMed |
| Boetius, A. and F. Wenzhöfer: Seafloor oxygen consumption fuelled by methane from cold seeps. Nature Geoscience 6(9), 725-734. doi:10.1038/ngeo1926. (2013) Nature Full Text |
| Buttigieg, P.L., W. Hankeln, I. Kostadinov, R. Kottmann, P. Yilmaz, M.B. Duhaime and F.O. Glöckner: Ecogenomic Perspectives on Domains of Unknown Function: Correlation-Based Exploration of Marine Metagenomes. (I. Friedberg, Ed.). PLoS ONE 8(3), e50869. doi:10.1371/journal.pone.0050869. (2013) PubMed Full Text |
| Chennu, A., P. Färber, N. Volkenborn, M.A.A. Al-Najjar, F. Janssen, D. de Beer and L. Polerecky: Hyperspectral imaging of the microscale distribution and dynamics of microphytobenthos in intertidal sediments. Limnology and Oceanography: Methods 11, 511-52. doi: 10.4319/lom.2013.11.511. (2013) ASLO Full Text |
| Cherkasheva, A., A. Bracher, C. Melsheimer, C. Köberle, R. Gerdes, E.-M. Nöthig, E. Bauerfeind and A. Boetius: Influence of the physical environment on polar phytopklankton blooms: a case study in the Fram Strait. Journal of Marine Systems. doi: 10.1016/j.jmarsys.2013.11.008. (2013) ePic Full Text |
| De Beer, D., M. Haeckel, J Neumann, G. Wegener, F. Inagaki and A. Boetius: Saturated CO2 inhibits microbial processes in CO2-vented deep-sea sediments. Biogeosciences 10, 5639–5649. doi:10.5194/bg-10-5639-2013. (2013) Biogeosciences Full Text |
| Deck, J., K. Barker, R. Beaman, P.L. Buttigieg, G. Dröge, R. Guralnick, C. Miller, E. Tuaman, Z. Murrell, C. Parr, B. Robbins, D. Schigel, B. Stucky, R. Walls, J. Wieczorek, N. Morrison and J. Wooley: Clarifying Concepts and Terms in Biodiversity Informatics. Standards in Genomic Sciences 8(2), 352–359. doi:10.4056/sigs.3907833. (2013) PubMed Full Text |
| Felden, J., A. Lichtschlag, F. Wenzhöfer, D. de Beer, T. Feseker, P. Pop Ristova, G. de Lange and A. Boetius: Limitations of microbial hydrocarbon degradation at the Amon Mud Volcano (Nile Deep Sea Fan). Biogeosciences 10, 3269–3283. doi:biogeosciences.net/10/3269/2013/. (2013) Biogeosciences Full Text |
| Glud, R.N., F. Wenzhöfer, M. Middelboe, K. Oguri, R. Turnewitsch, D.E. Canfield and H. Kitazato: High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth. Nature Geoscience 6, 284-288. doi: 10.1038/NGEO1773. (2013) Nature |
| Gobet, A., A. Boetius and A. Ramette: Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques. Environmental Microbiology. doi: 10.1111/1462-2920.12308. (2013) PubMed |
| Holtappels, M., R.N. Glud, D. Donis, B. Liu, A. Hume, F. Wenzhöfer and M. Kuypers: Effects of transient bottom water currents and oxygen concentrations on benthic exchange rates as assessed by eddy correlation measurements. Journal of Geophysical Research – Oceans 118, 1–13. doi:10.1002/jgrc.20112. (2013) Wiley |
| Jacob, M., T. Soltwedel, A. Boetius and A. Ramette: Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic). PLOS One 8(9):e72779. doi: 10.1371/journal.pone.0072779. (2013) PubMed Full Text |
| Meyer, S., G. Wegener, K.G. Lloyd, A. Teske, A. Boetius and A. Ramette: Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guayamas Basin. Frontiers Microbiology 4(207), 1-11. doi: 10.3389/fmicb.2013.00207. (2013) PubMed Full Text |
| Niemann, H., P. Linke, K. Knittel, E. MacPherson, A. Boetius, W. Brückmann, G. Larvik, K. Wallmann, U. Schacht, E. Omoregie, D. Hilton, K. Brown and G. Rehder: Methane-carbon flow into the benthic food web at cold seeps - a case study from the Costa Rica subduction zone. PLOS One 8(11). doi: 10.1371/journal.pone.0074894. (2013) PubMed Full Text |
| Ruff, S.E., J. Arnds, K. Knittel, R. Amann, G. Wegener, A. Ramette and A. Boetius: Microbial communities of deep sea methane seeps at Hikurangi continental margin (New Zealand). PLOS One 8(9): e72627. doi:10.1371/journal.pone.0072627. (2013) PubMed Full Text |
| Schöttner, S., F. Hoffmann, P. Cárdenas, H.T. Rapp, A. Boetius and A. Ramette: Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges. PLoS One 8(2): e55505. doi:10.1371/journal.pone.0055505. (2013) PubMed Full Text |
| Xie, S., J.S. Lipp, G. Wegener, T. Ferdelman and K.-U. Hinrichs: Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations. Proc. Natl. Acad. Sc. USA, 110(15), 6010-6014. (2013) PubMed Full Text |
| Yanagawa, K., Y. Morono, D. de Beer, M. Haeckel, M. Sunamura, T. Futagami, T. Hoshino, T. Terada, K. Nakamura, T. Urabe, G. Rehder, A. Boetius and F. Inagaki: Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes. The ISME Journal 7, 555-567. doi: 10.1038/ismej.2012.124 (2013) PubMed Full Text |
MarMic
Ph.D. theses| Emil Ruff: Microbial community ecology of marine methan seeps. University of Bremen. (2013) |
| Matthias Winkel: Chemolithotrophic and chemohetero- trophic microorganisms in sediment - and rock-hosted hydrothermal systems. University of Bremen.(2013) |
| Andreas Krupke: The role of unicellular cyanobacteria in nitrogen fixation and assimilation in subtropical marine waters. University of Bremen. (2013) |
| Sandra Havemeyer: Polyphosphate storage in the family Beggiatoaceae with a focus on the species Beggiatoa alba. University of Bremen. (2013) |
| Richard Hahnke: Cultivation of Flavobacteria and other in situ abundant bacteria from the North Sea. University of Bremen. (2013) |
| Ingrid Torres Monroy: Identification of bacterial genes required for diatom-bacteria interactions. Jacobs University. (2013) |
| Stefan Thiele: The role of specific microbial communities in the biological carbon pump. University of Bremen. (2013) |
| Boyan Angelov: Mud Volcanoes: A window to the Deep Biosphere. Investigating succession and functional shifts in marine deep subsurface microbial communities exposed to mud volcanism. University of Bremen. (2013) |
| Jasmine Berg: Single-cell analysis of sulfur compounds in living bacteria by Raman spectroscopy. University of Bremen. (2013) |
| Lennart Kappelmann: (Meta-)genomic analysis of the diversity and the carbohydrate degradation potential of the SAR92 clade during a Diatom-induced Bacterioplankton bloom. University of Bremen. (2013) |
| Clara Martinez Perez: Microbial control in P particle formation. University of Bremen. (2013) |
| Beatriz Noriega Ortega: Biogeochemistry of Dissolved Organic Matter (DOM) in the Dead Sea and its fresh water springs. University of Bremen. (2013) |
| Laura Piepgras: The fate of ammonium in anaerobic oxidation of methane. University of Bremen. (2013) |
| David Probandt: Enrichment of abundant sulfate reducers from tidal sediments. University of Bremen. (2013) |
| Greta Reintjes: Picoplankton community analysis along the Atlantic Meridional Transect AMT22. University of Bremen. (2013) |
| Miriam Sadowski: Molecular characterization of ectosymbiotic bacteria from nematodes in a shallow water system. University of Bremen. (2013) |
| Ioulia Santi: Microbial diversity and biogeochemistry of Milos (Aegean Sea, Greece) hydrothermal vents. University of Bremen. (2013) |
| Brandon Seah: Bacterial ectosymbionts of the ciliate Kentrophoros. University of Bremen. (2013) |