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Publications 1997
Publications 1997
Department of Biogeochemistry
| Canfield, D. E.: The geochemistry of river particulates from the continental USA: Major elements. Geochimica Cosmochimica Acta 61(16):3349-3365 (1997). PubMed |
| Ferdelman, T. G., C. Lee, S. Pantoja, J. Harder, B. M. Bebout, and H. Fossing: Sulfate reduction and methanogenesis in a Thioploca-dominated sediment off the coast of Chile. Geochim. Cosmochim. Acta 61(15):3065-3079 (1997). ScienceDirect |
| Habicht, K. S., D. E. Canfield: Sulfur isotope fractionation during bacterial sulfate reduction in organic-rich sediments. Geochimica et Cosmochimica Acta 61(24):5351-5361 (1997). PubMed |
| Khalili, A., A. J. Basu, and M. Huettel: A non-Darcy modell for recirculating flow through a fluid-sediment interface in a cylindrical container. Acta Mechanica 123:75-87 (1997). Springer |
| Khalili, A., A. J. Basu, and J. Mathew: A simpler implicit scheme for computing unsteady incompressible flows. Computational Fluid Dynamics Journal 6(3):385-398 (1997). |
| Greeff, O.W.: Entwicklung und Erprobung eines benthischen Landersystemes zur in situ-Bestimmung von Sulfatreduktionsraten mariner Sedimente. Berichte aus dem Fachbereich Geowissenschaften der Universität Bremen Nr. 108, Dissertation Universität Bremen, Bremen (1997), 121pp. |
| Habicht, K.S.: Sulfur isotope fractionation in marine sediments and bacterial cultures. Berichte aus dem Fachbereich Geowissenschaften der Universität Bremen Nr. 106, Dissertation Universität Bremen, Bremen (1997), 135pp. |
| Ziebis, W.: The impact of the Thalassinidean shrimp Callianassa truncata on the geochemistry of permeable, coastal sediments. Berichte aus dem Fachbereich Geowissenschaften der Universität Bremen Nr. 113, Dissertation Universität Bremen, Bremen (1997), 174pp. |
Department of Biogeochemistry
| Berninger, U. G., and M. Huettel: Impact of flow on oxygen dynamics in photosynthetically active sediments. Aquatic Microbial Ecology 12:291-302 (1997). AME Full Text |
| Büdel, B., U. Karsten, and F. Garcia-Pichel: Ultraviolet-absorbing scytonemin and mycosporine-like amino acid derivatives in exposed, rock-inhabiting cyanobacterial lichens. Oecologia 112:165-172 (1997). Springer |
| de Beer, D.: Microenvironments and mass transfer phenomena in biofilms and activated sludge studied with microsensors. In: Proceedings of the International Symposium on Environmental Microbiology, Oostende, April 21-23. pp. 217-224, H. Verachtert and W. Verstraete (eds.), Technologisch Instituut, Universiteit Gent, Gent (1997). ResearchGate |
| de Beer, D., A. Schramm., C. M. Santegoeds, and M. Kühl: A nitrite microsensor for profiling environmental biofilms. Applied and Environmental Microbiology 63(3):973-977 (1997). PubMed Full Text |
| de Beer, D., A. Schramm, C. M. Santegoeds and H. K. Nielsen: Anaerobic processes in activated sludge. In: Proceedings of the Second International Conference on Microorganisms in Activated Sludge and Biofilm Processes, July 1997. pp.783-786, D. Jenkins and S. W. Hermanowicz (eds.), Berkeley, California, USA, IAWQ (1997). |
| de Beer, D., A. Glud, E.Epping, and M. Kühl: A fast-responding CO2 microelectrode for profiling in sediments, microbial mats and biofilms. Limnology and Oceanography 42(7):1590-1600 (1997). RefDoc Full Text |
| de Beer, D., P. Stoodley, and Z. Lewandowski: Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy. Biotechnology and Bioengineering 53:151-158 (1997). PubMed |
| Fukshansky-Kazarinova, N., L. Fukshansky, M. Kühl and B.B. Jørgensen: General theory of three-dimensional radiance measurements with optical microprobes. Applied Optics 36:6520-6528 (1997). PubMed |
| Hensen, C., H. Landenberger, M. Zabel, J. K. Gundersen, R. N. Glud, and H. D. Schulz: Simulation of early diagenetic processes in continental slope sediments off soutwest Africa: the computer model CoTAM tested. Marine Geology 144:191-210 (1997). ScienceDirect |
| Holst, G., M. Kühl, I. Klimant, G. Liebsch and O. Kohls: Characterization and application of temperature microoptodes for use in aquatic biology. SPIE Proceedings 2980:164-171 (1997). SPIE |
| Holst, G., R. N. Glud, M. Kühl and I. Klimant: A microoptode array for fine scale measurements of oxygen distribution. Sensors and Actuators B 38-39:122-129 (1997). ScienceDirect |
| Klimant, I., G. Holst, and M. Kühl: A simple fiber-optic sensor to detect the penetration of microsensors into sediments and other biological systems. Limnol. and Oceanogr. 42(7):1638-1643 (1997). Full Text |
| Klimant, I., M. Kühl, R. N. Glud , and G. Holst: Optical measurement of oxygen and temperature in microscale: Strategies and biological applications. Sensors and Actuators B 38-39:29-37 (1997). ScienceDirect |
| Kohls, O., I. Klimant, G. Holst, and M. Kühl: Development and comparison of pH microoptodes for use in marine systems. SPIE Proceedings 2978:82-94 (1997). SPIE |
| Kühl, M., C. Lassen., and N. P. Revsbech: A simple light meter for measurements of PAR (400-700 nm) with fiber-optic microprobes: application for P vs. E0 measurements in a microbial mat. Aquatic Microbial Ecology 13:197-207 (1997). Full Text |
| Ploug, H., M. Kühl, B. Buchholz-Cleven, and B. B. Jørgensen: Anoxic aggregates - an ephemeral phenomenon in the pelagic environment? Aquatic Microbial Ecology 13:285-294 (1997). UTS |
| Santegoeds, C.M., G. Muyzer and D. De Beer: Successional processes in a bacterial biofilm determined with microsensors and molecular techniques. In: Proceedings of the International Symposium on Environmental Microbiology, Oostende, April 21-23. pp. 77-82, H. Verachtert and W. Verstraete (eds.), Technologisch Instituut, Universiteit Gent, Gent (1997). ASM Full Text |
| Stoodley, P., D. De Beer, and H. M. Lappin-Scott: Influence of electric fields and pH on biofilm structure as related to the bioelectric effect. Antimicrobial Agents and Chemotherapy 41(9):1876-1879 (1997). ASM Full Text |
| Wenzhöfer F., B. Kriszt, G. Benckiser and J.C.G. Ottow: Lachgas (N2O) Freisetzung durch Streptomyces nitrosporeus in einem sandigen Lehmboden in Abhängigkeit von pO2, pH und Angebot an leicht mineralisierbarem Kohlenstoff. Zeitschrift für Pflanzenernährung und Bodenkunde 160:201-208 (1997). Wiley |
| Giesecke, A: Bentische Ciliaten, ihre Verteilung und ihre Rolle im Nahrungsgefüge des Wattenmeersediments der Nordsee. Tierärtzliche Hochschule Hannover (1997). |
| Thar, R.:Lichtausbreitung in Sedimenten. RWTH Aachen (1997). |
| Berninger, U. G.: Vorkommen und ökologische Bedeutung freilebender Protisten in pelagischen und benthischen Habitaten. Tierärtzliche Hochschule Hannover (1997). |
Department of Microbiology
| Foß, S. and J. Harder: Microbial transformation of a tertiary allylalcohol: regioselective isomerisation of linalool to geraniol without nerol formation. FEMS Microbiology Letters 149:71-75 (1997). ScienceDirect Full Text |
| Harder, J.: Anaerobic degradation of cyclohexane-1,2-diol by a new Azoarcus species. Arch. Microbiol. 168:199-204 (1997). Springer |
| Harder, J.: Anaerobic methane oxidation by bacteria employing 14C-methane uncontaminated with 14C-carbon monoxide. Marine Geology 137:13 - 23 (1997). ScienceDirect |
| Harder, J.: Species-independent maintenance energy and natural population sizes. FEMS Microbiol. Ecol. 23:39-44 (1997). ScienceDirect Full Text |
| Harder, J. and C. Probian: Anaerobic mineralization of cholesterol by a novel type of denitrifying bacterium. Arch. Microbiol. 167:269-274 (1997). Springer |
| Detmers, J.: Dissimilatorisch-Fe(III)-reduzierende Bakterien - eine mikrobiologisch-ökologische Untersuchung. Osnabrück (1997). |
| Gerlach, J.: Einfluß von Thiosulfat auf den anabolischen und katabolischen Acetat-Umsatz in Beggiotoa alba. Bremen (1997). |
| Lüchtenborg, J.: Umsetzung von reduzierten Schwefelverbindungen durch neu isolierte autotrophe Thiomicrospira Spezies. Fachhochschule Emden (1997). |
| Straub, K.: Bakterielle anaerobe Oxidation von Fe(II) und Reduktion biologisch gebildeten Ferrihydrits durch Fe(III)-Reduzierer. Dissertation Universität Bremen, Bremen (1997), 136pp. |
Molecular Ecology Group
| Amann, R., F.-O. Glöckner and A. Neef: Modern methods in subsurface microbiology: in situ identification of microorganisms with nucleic acid probes. FEMS Microbiology Reviews 20(3/4):191-200 (1997). Wiley Full Text |
| Amann, R., N. Springer, W. Schönhuber, W. Ludwig, E.N. Schmid, K.-D. Müller and R. Michel: Obligate intracellular bacterial parasites of acanthamoebae related to Chlamydia spp. Applied and Environmental Microbiology 63(1):115-121 (1997). PubMed Full Text |
| Amann, R.: Fluorescent, rRNA-targeted oligonucleotide probes for analyzing the in situ structure and dynamics of complex microbial communities. In: Proceedings of the International Symposium on Environmental Microbiology, Oostende, April 21-23. pp.141-145 , H. Verachtert and W. Verstraete (eds.), Technologisch Instituut, Universiteit Gent, Gent (1997). ASM Full Text |
| Brinkhoff, T. and G. Muyzer: Increased species diversity and extended habitat range of sulfur-oxidizing Thiomicropsira spp. Applied and Environmental Microbiology 63(10):3789-3796 (1997). PubMed Full Text |
| Buchholz-Cleven, B.E.E., B. Rattunde and K.L. Straub: Screening for genetic diversity of isolates of anaerobic Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization. Syst. Appl. Microbiol, 20:301-309 (1997). ScienceDirect |
| Eberl, L., R. Schulze, A. Ammendola, O. Geisenberger, R. Erhart, C. Sternberg, S. Molin and R. Amann: Use of green fluorescent protein as a marker for ecological studies of activated sludge communities. FEMS Microbiology Letters 149:77-83 (1997). Wiley Full Text |
| Erhart, R., D. Bradford, E.M. Seviour, R. Amann and L.L. Blackall: Development and use of fluorescent in situ hybridization probes for the detection and identification of "Microthrix parvicella" in activated sludge. System. Appl. Microbiol. 20:310-318 (1997). ScienceDirect |
| Jetten, M.S.M., S. Logemann, G. Muyzer, L.A. Robertson, S. de Vries, M.C.M. van Loosdrecht and J.G. Kuenen: Novel principles in the microbial conversion of nitrogen compounds. Antonie van Leeuwenhoek 71:75-93 (1997). Springer |
| Lemmer, H., A. Zaglauer, A. Neef, H. Meier and R. Amann: Dentrification in a Methanol-Fed Fixed-Bed Reactor. Part 2: Composition and Ecology of the Bacterial community in the Biofilms. Wat. Res. 31(8):1903-1908 (1997). ScienceDirect |
| Lischewski, A., M. Kretschmar, H. Hof, R. Amann, J. Hacker and J. Morschhäuser: Detection and identification of Candida species in experimentally infected tissue and human blood by rRNA-specific fluorescent in situ hybridization. Journal of Clinical Microbiology 35(11):2943-2948 (1997). PubMed Full Text |
| Muyzer, G., T. Brinkhoff, U. Nübel, C. Santegoeds, H. Schäfer and C. Wawer: Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In: Molecular Microbial Ecology Manual 3.4.4. pp.1-27, A.D.L. Akkermans, J.C. van Elsas and F.J. de Bruijn (eds.), Kluwer, Dordrecht (1997). Intech Full Text |
| Nübel, U., F. Garcia-Pichel and G. Muyzer: PCR primers to amplify 16S rRNA genes from cyanobacteria. Applied and Environmental Microbiology 63(8):3327-3332 (1997). NCBI Full Text |
| Schönhuber, W., B. Fuchs, S. Juretschko and R. Amann: Improved sensitivity of whole cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification. Applied and Environmental Microbiology 63(8):3268-3273 (1997). ASM Full Text |
| Schramm, A., L.H. Larsen, N.P. Revsbech and R.I. Amann: Structure and function of a nitrifying biofilm as determined by microelectrodes and fluorescent oligonucleotide probes. Water Science and Technology 36(1):263-270 (1997). NCBI Full Text |
| Snaidr, J., R. Amann, I. Huber, W. Ludwig and K.-H. Schleifer: Phylogenetic analysis and in situ identification of bacteria in activated sludge. Applied and Environmental Microbiology 63(7):2884-2896 (1997). PubMed Full Text |
| Steinert, M., L. Emödy, R. Amann, and J. Hacker: Resuscitation of Viable but Nonculturable Legionella pneumophila Philadelphia JR32 by Acanthamoeba castellanii. Applied and Environmental Microbiology 63(5):2047-2053 (1997). PubMed Full Text |
| Vallaeys, T., E. Topp, G. Muyzer, V. Macheret, G. Laguerre, A. Rigaud and G. Soulas: Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs. FEMS Microbiology Ecology 24:279-285 (1997). Wiley Full Text |
| Wallner, G., B. Fuchs, S. Spring, W. Beisker and R. Amann: Flow sorting of microorganisms for molecular analysis. Applied and Environmental Microbiology 63(3):4223-4231 (1997). ASM Full Text |
| Wawer, C., M.S.M. Jetten and G. Muyzer: Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples. Applied and Environmental Microbiology 63(11):4360-4369 (1997). PubMed Full Text |
| Zarda, B., D. Hahn, A. Chatzinotas, W. Schönhuber, A. Neef, R.I. Amann and J. Zeyer: Analysis of bacterial community structure in bulk soil by in situ hybridization. Archives of Microbiology 168:185-192 (1997). Springer |