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Publications 2001
Publications 2001
Department of Biogeochemistry
| Bian, L., K.-U. Hinrichs, T. Xie, S. C. Brassell, N. Iversen, H. Fossing, B.B. Jørgensen and J. M. Hayes: Algal and archaeal polyisoprenoids in a recent marine sediment: Molecular isotopic evidence for anaerobic oxidation of methane. Geochemistry Geophysics Geosystems 2:1-22 (2001). Wiley Full Text |
| Böttcher, M. E: Sulfur isotope fractionation in the biogeochemical sulfur cycle of marine sediments. Isotopes in Environmental and Health Studies 37(2):97-99 (2001). PubMed |
| Böttcher, M. E. and B. Thamdrup: Anaerobic sulfide oxidation and stable isotope fractionation associated with bacterial sulfur disproportionation in the presence of MnO2. Geochimica et Cosmochimica Acta 65(10):1573-1581 (2001). ScienceDirect |
| Böttcher, M. E., B. Thamdrup and T. W. Vennemann: Oxygen and sulfur isotope fractionation during anaerobic bacterial disproportionation of elemental sulfur. Geochimica et Cosmochimica Acta 65(10):1601-1609 (2001). ScienceDirect |
| Brüchert, V., C. Knoblauch and B. B. Jørgensen: Controls on stable sulfur isotope fractionation during bacterial sulfate reduction in Arctic sediments. Geochimica et Cosmochimica Acta 65(5):753-766 (2001). ScienceDirect |
| Dubinin, A. V. and S. V. Strekopytov: Behavior of rare earth elements during leaching of the oceanic sediments. Geochemistry International 39(7):692-701 (2001). Sebina |
| Elvert, M., J. Greinert, E. Suess and M. J. Whiticar: Carbon isotopes of biomarkers derived from methane-oxidizing microbes at Hydrate Ridge, Cascadia convergent margin. pp.115-129, In: Natural Gas Hydrates: Occurrence, Distribution, and Detection. American Geographical Union 124 (2001). Wiley |
| Fones, G. R., W. Davison, O. Holby, B. B. Jørgensen and B. Thamdrup: High-resolution metal gradients measured by in situ DGT/DET deployment in Black Sea sediments using an autonomous benthic lander. Limnology and Oceanography 46(4):982-988 (2001). Full Text |
| Jørgensen, B. B.: Space for hydrogen. News and Views Nature 412, 286-289 (2001). Full Text |
| Jørgensen, B. B., U. Franke, G. Holst and H. Røy: Oxygen transport across the benthic boundary layer: from a 1-D to a 3-D view. ASLO Bulletin 10:21-25 (2001). |
| Jørgensen, B. B., A. Weber and J. Zopfi: Sulfate reduction and anaerobic methane oxidation in Black Sea sediments. Deep-Sea Research I 48, 2097-2120 (2001). ScienceDirect |
| Larsen, O. and D. Postma: Kinetics of reductive bulk dissolution of lepidocrocite, ferihydrite, and goethite. Geochimica et Cosmochimica Acta 65(9):1367-1379 (2001). ScienceDirect |
| Neretin, L., I. I. Volkov, M. E. Böttcher and V.A. Grinenko: A sulfur budget for the Black Sea anoxic zone. Deep-Sea Research I 48:2569-2593 (2001). ScienceDirect |
| Sand, W., T. Gehrke, P.-G. Jozsa and A. Schippers: (Bio)chemistry of bacterial leaching - direct vs. indirect bioleaching. Hydrometallurgy 59:159-175 (2001). ScienceDirect |
| Schippers, A. and B. B. Jørgensen: Oxidation of pyrite and iron sulfide by manganese dioxide in marine sediments. Geochimica et Cosmochimica Acta 65(6):915-922 (2001). ScienceDirect |
| Schippers, A., P.-G. Jozsa and W. Sand: Microbiological pyrite oxidation in a mine tailings heap and its relevance to the death of vegetation. Geomicrobiology Journal 17:151-162 (2001). TFO |
| Schippers, A., P.-G. Jozsa, Z. M. Kovacs, M. Jelea and W. Sand: Large-scale experiments for microbiological evaluation of measures for safeguarding sulfidic mine waste. Waste Management 21:139-146 (2001). PubMed |
| Schubert, C. J. and S. E. Calvert: Nitrogen and carbon isotopic composition of marine and terrestrial organic matter in Arctic Ocean sediments: implications for nutrient utilization and organic matter composition. Deep Sea Research I 48:789-810 (2001). ScienceDirect |
| Schubert, C. J., R. Stein and S. E. Calvert: Tracking nutrient and productivity variations over the last deglaciation in the Arctic Ocean. Paleoceanography 16(2):199-211 (2001). Wiley Full Text |
| Schulz, H. N. and B. B. Jørgensen: Big bacteria. Annual Review of Microbiology 55:105-137 (2001). PubMed |
| Strekopytov, S. V. and A.V.Dubinin: On the geochemistry of the ferriginous concretions of the Barents Sea. Oceanology 41(3):367-374 (2001). Zotero Full Text |
| Surkov, A. V., M. E. Boettcher and J. Kuever: Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis. Archives of Microbiology 174:448-451 (2001). PubMed |
| von Blanckenburg, F. and M. E. Böttcher: Abiotic stable iron isotope fractionation. European Journal of Mineralogy (Supplement) 13:193-194 (2001). |
| Weber, A., W. Riess, F. Wenzhoefer and B.B. Jørgensen: Sulfate reduction in Black Sea sediments: in situ and laboratory radiotracer measurements from the shelf to 2000 m depth. Deep-Sea Research I 48:2073-2096 (2001). ScienceDirect |
| Wijsman, J. W. M., J. J. Middelburg, P. M. J.Hermann, M. E. Böttcher and C. H. R. Heip: Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea. Marine Chemistry 75:261-278 (2001). ScienceDirect |
| Wortmann, U. G., S. M. Bernasconi and M. E. Böttcher: Hypersulfidic deep biosphere indicates extreme sulfur isotope fractionation during single-step bacterial sulfate reduction. Geology 29(7):647-650 (2001). Geology Full Text |
| Zopfi, J., T. G. Ferdelman, B. B. Jørgensen, A. Teske and B. Thamdrup: Influence of water column dynamics on sulfide oxidation and other major biogeochemical processes in the chemocline of Mariager Fjord (Denmark). Marine Chemistry 74:29-51 (2001). ScienceDirect |
| Zopfi, J., T. Kjaer, L. P. Nielsen and B. B. Jørgensen: Ecology of Thioploca spp. : Nitrate and sulfur storage in relation to chemical microgradients and influence of Thioploca spp. on the sedimentary nitrogen cycle. Applied and Environmental Microbiology 67(12):5530-5537 (2001). Zotero Full Text |
Flux Group
| Boudreau, B. P., M. Huettel , S. Forster, R. A. Jahnke, A. McLachlan, J. J. Middelburg, P. Nielsen, F. Sansone, G. Taghon, W. Van Raaphorst, I. Webster, J. M. Weslawski, P. Wiberg and B. Sundby: Permeable marine sediments: overturning an old paradigm. EOS 82(11):133-136 (2001). Wiley Full Text |
| Bühring, S. I. and B. Christiansen: Lipids in selected abyssal benthopelagic animals: links to the epipelagic zone? Progress in Oceanography 50:369-382 (2001). ScienceDirect |
| Richter, C., M. Wunsch, M. Rasheed, I. Kötter and M. I. Badran: Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges. Nature 413:726-730 (2001). PubMed |
| Rusch, A., S. Forster, and M. Huettel: Bacteria, diatoms and detritus in an intertidal sandflat subject to advective transport across the water-sediment interface. Biogeochemistry 55:1-27 (2001). Springer |
Microsensor Group
| Abed, R. and F. Garcia-Pichel: Long-term compositional changes after transplant in a microbial mat cyanobacterial community revealed using a polyphasic approach. Environmental Microbiology 3(1):53-62 (2001). PubMed |
| de Beer, D.: Chapter 10. Micro-Electrodes. pp.85-100, In: Immobilized cells. R.H. Wijffels (ed.), Springer Lab Manual, Springer Verlag, Berlin, Heidelberg, New York (2001). |
| de Beer, D.: Chapter 12. Microsensor studies of oxygen, carbon and nitrogen cycles in lake sediments and microbial mats. pp.227-246, In: Environmental Electrochemistry: Analyses of Trace Element Biogeochemistry. M. Taillefert and T. F. Rozan (eds.), American Chemical Society Symposium Series Vol. 811, Washington DC (2001). ResearchGate |
| de Beer, D. and A. J. W. Larkum: Photosynthesis and calcification in the calcifying algae Halimeda discoidea studied with microsensors. Plant, Cell & Environment 24: 1209-1217 (2001). Wiley Full Text |
| Glud, R. N., A. Tengberg, M. Kühl, P. O. J. Hall, I. Klimant and G. Holst: An in situ instrument for planar O2 optode measurements at benthic interfaces. Limnology and Oceanography 46(8):2073-2080 (2001). ResearchGate Full Text |
| Hanstein, S., D. de Beer and H. H. Felle: Miniaturized carbon dioxide sensor designed for measurements within plant leaves. Sensors & Actuators B 81:107-114 (2001). ScienceDirect |
| Holst, G. and B. Grunwald: Luminescence Lifetime Imaging with Transparent Oxygen Optodes. Sensors & Actuators B 74:74-90 (2001). ScienceDirect |
| Stief, P.: Formation of ecotoxicologically relevant nitrite concentrations within nitrate-exposed sediments. Verhandlungen Internationaler Vereine für Limnologie 27:3751-3755 (2001). |
| Stief, P.: Influence of sediment and pore-water composition on nitrite accumulation in a nitrate-perfused freshwater sediment. Water Research 35(12):2811-2818 (2001). PubMed |
| Wieland, A., D. de Beer, L. R. Damgaard, M. Kuehl, D. van Dusschoten and H. van As: Fine-scale measurement of diffusivity in a microbial mat with nuclear magnetic resonance imaging. Limnology and Oceanography 46(2):248-259 (2001). ASLO Full Text |
| Abed, R.: Variations of community composition of cyanobacterial mats in response to environmental disturbance with emphasis on the biodegradation of petroleum derivatives. Dissertation Universität Bremen, Bremen (2001), 150pp. |
| Grötzschel, S.: Physiological reactions of hypersaline cyanobacterial mats upon degradation of organic pollutants. Simmering Verlag, Lilienthal (2002), zugleich Dissertation Universität Bremen, Bremen (2001), 148pp. |
| Stehning, C.: Project study: Theoriegrundlagen, Aufbau und Vermessung eines volloptischen Lichtwellenleiter-Multiplexers (Theory, design and application of optical fiber multiplexers). University Bremen (2001). |
Department of Microbiology
| Detmers, J., V. Brüchert, K. Habicht and J. Kuever: Diversity of sulfur isotope fractionations by sulfate-reducing prokaryotes. Applied and Environmental Microbiology 67(2):888-894 (2001). PubMed Full Text |
| Grünberg, K., C. Wawer, B.M. Tebo and D. Schüler: A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria. Applied and Environmental Microbiology 67(19):4573-4582 (2001). PubMed Full Text |
| Kniemeyer, O. and J. Heider: Ethylbenzene dehydrogenase, a novel hydrocarbon-oxidizing molybdenum/iron-sulfur/heme enzyme. Journal of Biological Chemistry 276(24):21381-21386 (2001). PubMed Full Text |
| Kniemeyer, O. and J. Heider: (S)-1-Phenylethanol dehydrogenase of Azoarcus sp. strain EbN1, an enzyme of anaerobic ethylbenzene catabolism. Archives of Microbiology 176:129-135 (2001). PubMed |
| Kuever, J., M. Könneke, A. Galushko and O. Drzyzga: Reclassification of Desulfobacterium phenolicum as Desulfobacula phenolica comb. nov. and description of strain SaxT as Desulfotignum balticum gen. nov., sp. nov. International Journal of Systematic and Evolutionary Microbiology 51:171-177 (2001). IJSEM Full Text |
| Rabus, R., H. Wilkes, A. Behrends, A. Armstroff, T. Fischer, A.J. Pierik and F. Widdel.: Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism. Journal of Bacteriology 183(5):1707-1715 (2001). NCBI Full Text |
| Surkov, A.V., G.A. Dubinina, A.M. Lysenko, F.O. Glöckner and J. Kuever: Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus sp. nov. and Dethiosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments. International Journal of Systematic and Evolutionary Microbiology 51:327-337 (2001). PubMed Full Text |
| Widdel, F. and R. Rabus: Anaerobic biodegradation of saturated and aromatic hydrcarbons. Current Opinion in Biotechnology 12:259-276 (2001). PubMed |
| Meyer, B.: Molekularer Nachweis der dissimilatorischen APS-Reduktase in am Schwefelkreislauf beteiligten Mikroorganismen. Universität Bremen (2001). |
| Detmers, J.: An aquifer in the deep subsurface – microbiology and sulfur isotope fractionation. Dissertation Universität Bremen, Bremen (2001), 118pp. |
| Kniemeyer, O.: Neuartige Reaktionen beim anaeroben Abbau von Kohlenwasserstoffen - Verwertung von Ethylbenzol und kurzkettigen Alkanen. Dissertation Universität Bremen, Bremen (2001), 145pp. |
| Könneke, M.: Untersuchung der zellularen Fettsäuren von sulfatreduzierenden Bakterien aus kalten, marinen Sedimenten. Dissertation Universität Bremen, Bremen (2001), 132pp. |
Molecular Ecology Group
| Amann, R., B. M. Fuchs and S. Behrens: The identification of microorganisms by fluorescence in situ hybridisation. Current Opinion in Biotechnology 12:231-236 (2001). PubMed |
| Dubilier, N., C. Mülders, T. Ferdelman, D. De Beer, A. Pernthaler, M. Klein, M. Wagner, C. Erséus, F. Thiermann, J. Krieger, O. Giere and R. Amann: Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Nature 411:298-302 (2001). PubMed |
| Eilers, H., J. Pernthaler, J. Peplies, F. O. Glöckner, G. Gerdts and R. Amann: Isolation of novel pelagic bacteria from the German Bight and their seasonal contributions to surface picoplankton. Applied and Environmental Microbiology 67(11):5134-5142 (2001). PubMed Full Text |
| Fuchs, B. M., K. Syutsubo, W. Ludwig and R. Amann: In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes. Applied and Environmental Microbiology 67(2):961-968 (2001). PubMed Full Text |
| Gieseke, A., U. Purkhold, M. Wagner, R. Amann and A. Schramm: Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Applied and Environmental Microbiology 67(3):1351-1362 (2001). PubMed Full Text |
| Kirchman, D. L., L. Yu, B. M. Fuchs and R. Amann: Structure of bacterial communities in aquatic systems as revealed by filter PCR. Aquatic Microbial Ecology 26:13-22 (2001). ResearchGate |
| Nogales, B., E. R. B. Moore, E. Llobet-Brossa, R. Rosselló-Mora, R. Amann and K. N. Timmis: Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Applied and Environmental Microbiology 67(4):1874-1884 (2001). PubMed Full Text |
| Pernthaler, J., F. O. Glöckner, W. Schönhuber and R. Amann: Chapter 11. Fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. In: Methods in Microbiology (Vol. 30): Marine Microbiology. pp.207-226, J. Paul (ed.), Academic Press, San Diego, USA (2001). NCBI Full Text |
| Pernthaler, A., J. Pernthaler, H. Eilers and R. Amann: Growth patterns of two marine isolates: adaptations to substrate patchiness? Applied and Environmental Microbiology 67(9):4077-4083 (2001). PubMed Full Text |
| Pernthaler, J., T. Posch, K. Simek, J. Vrba, A. Pernthaler, F. O. Glöckner, U. Nübel, R. Psenner and R. Amann: Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67(5):2145-2155 (2001). PubMed Full Text |
| Posch, T., M. Loferer-Krößbacher, G. Gao, A. Alfreider, J. Pernthaler and R. Psenner: Precision of bacterioplankton biomass determination: a comparison of two fluorescent dyes, and of allometric and linear volume-to-carbon conversion factors. Aquatic Microbial Ecology 25:55-63 (2001). AME Full Text |
| Ravenschlag, K., K. Sahm and R. Amann: Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard). Applied and Environmental Microbiology 67(1):387-395 (2001). PubMed Full Text |
| Rosselló-Mora, R. and R. Amann: Review. The species concept for prokaryotes. FEMS Microbiology Reviews 25:39-67 (2001). Wiley Full Text |
| Schönhuber, W., G. Le Bourhis, J. Tremblay, R. Amann and S. Kulakauskas: Utilization of tmRNA sequences for bacterial identification. BMC Microbiology 1:20 (2001). PubMed Full Text |
| Schramm, A., D. de Beer, A. Gieseke and R. Amann: Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ. Microbiol. 2(6):680-686 (2001). PubMed |
| Schweitzer, B., I. Huber, R. Amann, W. Ludwig and M. Simon: α- and β-Proteobacteria control the consumption and release of amino acids on lake snow aggregates. Applied and Environmental Microbiology 67(2):632-645 (2001). PubMed Full Text |
| Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornák, J. R. Dolan, J. Nedoma, M. Mašn and R. Amann: Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67(6):2723-2733 (2001). PubMed Full Text |
| West, N. J., W. A. Schönhuber, N. J. Fuller, R. I. Amann, R. Rippka, A. F. Post and D. J. Scanlan: Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147:1731-1744 (2001). PubMed Full Text |
| Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann and P. H. Burkill: Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Environmental Microbiology 3(5):304-311 (2001). PubMed Full Text |
| Zubkov, M. V., B. M. Fuchs, P. H. Burkill and R. Amann: Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Applied and Environmental Microbiology 67(11):5210-5218 (2001). SciFLO Full Text |
| Blazejak, A.: Molekularbiologische Charakterisierung der mit marinen Oligochaeten (Annelida) assoziierten Bakterien. Fachbereich Biotechnologie der Technischen Universität Berlin (2001). |
| Lemke, A.: Mikrobielle Diversität in gashydrathaltigen Sedimenten. Fachbereich Chemie (Studiengang Marine Umweltwissenschaften) der Universität Oldenburg (2001). |
| Gieseke, A.: Microscale structure and activity of complex nitrifying wastewater biofilms. Dissertation Universität Bremen, Bremen (2001), 156pp. |
| Schäfer, H.: Dynamics of the genetic diversity of marine bacterial assemblages. Dissertation Universität Bremen, Bremen (2001), 154pp. |