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Pub­lic­a­tions 2003

Pub­lic­a­tions 2003

De­part­ment of Biogeo­chem­istry

Arnosti, C. and B. B. Jørgensen: High activ­ity and low tem­per­at­ure op­tima of ex­tra­cel­lu­lar en­zymes in Arc­tic sed­i­ments: im­plic­a­tions for car­bon cyc­ling by het­ero­trophic mi­cro­bial com­munit­ies. Mar­ine Eco­logy Pro­gress Series 249:15-24 (2003). ResearchGate Full Text
Batel, S., M. E. Böttcher, K. Bosselmann, H.-J. Brumsack and B. B. Jørgensen: Biogeo­chemische Stof­fum­sätze im S-Mn-Fe-Kre­is­lauf eines tidalen Ober­flächensed­i­ments der süd­lichen Nord­see: Eine ex­per­i­mentelle Studie. Sed­i­ment 2003, 10-14 June 2003, Wil­helmshaven, TERRA NOS­TRA 03/​3:83 (2003).
Böning, H. P., M. E. Böttcher, B. Schnetger, J. Kallmeyer, C. Kriete and H.-J. Brumsack: In­or­ganic and sul­fur iso­tope geo­chem­istry of Holo­cene Per­uvian up­welling sed­i­ments. GEO­CHEM 2003, Jahresta­gung Sek. Geo­chemie der DMG, 27.-28.6.2003, Olden­burg, Ab­stracts Geochim­ica et Cosmochim­ica Acta (2003).
Bosselmann, K., M. E. Böttcher, M. Billerbeck, E. Walpersdorf, A. Theune, D. de Beer, M. Hüttel, H.-J. Brumsack and B. B. Jørgensen: Iron-sul­fur-man­ganese dy­nam­ics in in­ter­tidal sur­face sed­i­ments of the North Sea. Forschung­szen­trum Ter­ramare Berichte 12:32-35 (2003). ResearchGate Full Text
Böttcher, M.E., J. Rinna, B. Warning, R. Wehausen, M.W. Howell, B. Schnetger, R. Stein, H.-J. Brumsack, J. Rullkötter: Geo­chem­istry of sed­i­ments from the con­nec­tion between the west­ern and the east­ern Medi­ter­ranean Sea (Strait of Si­cily, ODP Site 963). Pa­laeo­geo­graphy, Pa­laeo­cli­mato­logy, Pa­laeoe­co­logy 190:165-194 (2003). ScienceDirect
Böttcher, M. E., D. de Beer, M. Billerbeck, K. Bosselmann, L. Polerecky, E. Walpersdorf, U. Werner, P. Bird, T. Ferdelman, U. Franke, M. Huettel and B. B. Jørgensen: Liv­ing every day with Noah's flood: Ele­ment dy­nam­ics in in­ter­tidal sur­face sed­i­ments of the North Sea. Forschung­szen­trum Ter­ramare Berichte 12:35-36 (2003). Full Text
Böttcher, M. E. and J. Glaeser: Sampling of sur­face sed­i­ments for en­rich­ment stud­ies of sulfate-re­du­cing and sul­fur-dis­pro­por­tion­at­ing bac­teria. In C. Hem­leben, K. Ho­ernle, B. B. Jør­gensen and W. Ro­ether (ed.), MET­EOR-Berichte Os­tat­lantik - Mit­tel­meer - Schwar­zes Meer, Cruise No. 51, 12.9. - 28.12.2001, Uni­versität Ham­burg, 03-1:4-29 (2003). Full Text
Böttcher, M. E., A. Boetius and D. Rickert: Sul­fur iso­tope frac­tion­a­tion dur­ing mi­cro­bial sulfate re­duc­tion as­so­ci­ated with an­aer­obic meth­ane ox­id­a­tion. TERRA NOS­TRA 03/​3:89 (2003). ResearchGate
Böttcher, M. E., K. Bosselmann, B. Hespenheide and B. Oelschläger: Iso­topendiskrimin­ier­ung im biogeo­chemischen Schwe­felkre­is­lauf von Sand­watt-Sed­i­men­ten. TERRA NOS­TRA 03/​3:16 (2003).
Brüchert, V. and C. Arnosti: An­aer­obic Car­bon Trans­form­a­tion: Ex­per­i­mental Stud­ies With Flow-Through Cells. Mar­ine Chem­istry 80:171-183 (2003). ScienceDirect
Brüchert, V., B. B. Jørgensen, K. Neumann, D. Riechmann, M. Schlösser and H. Schulz: Reg­u­la­tion of bac­terial sulfate re­duc­tion and hy­dro­gen sulf­ide fluxes in the cent­ral Nam­i­bian coastal up­welling zone. Geochim­ica et Cosmochim­ica Acta 67(23):4505-4518 (2003). ScienceDirect
D'Hondt, S., B. B. Jørgensen, J. Miller and the Leg 201 Scientific party: ODP Leg 201 ex­plores mi­cro­bial life in deeply bur­ied mar­ine sed­i­ments of Peru, JOIDES Journal, Vol. 29, No. 1, 11-15 (2003). Full Text
Elvert, M., A. Boetius, K. Knittel and B. B. Jørgensen: Char­ac­ter­iz­a­tion of spe­cific mem­brane fatty acids as chemo­taxo­nomic mark­ers for sulfate-re­du­cing bac­teria in­volved in an­aer­obic ox­id­a­tion of meth­ane. Geo­mic­ro­bi­o­logy Journal, 20: 403-419 (2003). TFO
Felske, A., V. Vandieken, B.V. Pauling, H.F. von Canstein, I. Wagner-Döbler: Mo­lecu­lar quan­ti­fic­a­tion of genes en­cod­ing for green-fluor­es­cent pro­teins. Journal of Mi­cro­bi­o­lo­gical Meth­ods, 52:297-304(2003). PubMed
Gerdes, G., G. Liebezeit, M. E. Böttcher, B. Schnetger and A. Heinze: Mod­ern car­bon­ate con­cre­tions in Wad­den Sea tidal flats. TERRA NOS­TRA 03/​3:104 (2003).
Jetten, M. S. M., O. Sliekers, M. M. M. Kuypers, T. Dalsgaard, L. van Niftrik, I. Cirpus, K. van de Pas-Schoonen, G. Lavik, B. Thamdrup, D. Le Paslier, H. Op den Camp, S. Hulth, L. P. Nielsen, W. Abma, K. Third, P. Engström, J. G. Kuenen, B. Barker Jørgensen, D. Canfield, J. S. Sinninghe Damsté, N. P. Revsbech, J. Fuerst, J. Weissenbach, M. Wagner, I. Schmidt, M. Schmid and M. Strous: An­aer­obic am­monium ox­id­a­tion by mar­ine and fresh­wa­ter planc­to­my­cete-like bac­teria. Ap­plied Mi­cro­bi­o­logy Bi­o­tech­no­logy 63:107-114 (2003). PubMed
Jørgensen, B. B: Life in the deep sub-sea­floor bio­sphere. En­ergy, Ex­plor­a­tion & Ex­ploit­a­tion 21(4):319-322 (2003). Full Text
Jørgensen, B.B., M. Böttcher, H. Lüschen, L. N. Neretin and I. I. Volkov: An­aer­obic meth­ane ox­id­a­tion and a deep H2S sink gen­er­ate iso­top­ic­ally heavy sulf­ides in Black Sea sed­i­ments. Geochim­ica et Cosmochim­ica Acta 68(9):2095-2118. ScienceDirect
Kallmeyer, J., T. G. Ferdelman, K.-H. Jansen and B. B. Jørgensen: A high-pres­sure thermal gradi­ent block for in­vest­ig­at­ing mi­cro­bial activ­ity in mul­tiple deep-sea samples. Journal of Mi­cro­bi­o­lo­gical Meth­ods 55:165-172 (2003). PubMed
Klages, M., A. Boetius, J. P. Christensen, H. Deubel, D. Piepenburg, I. Schewe and T. Soltwedel: Chapter 6. The benthos of Arc­tic Seas and its role for the or­ganic car­bon cycle at the sea­floor, p. 139-167. In The Arc­tic Or­ganic Car­bon Cycle. R. Stein, R. W. Mac­don­ald (eds.), Springer Ver­lag, Heidel­berg (2003). Springer
Kuypers, M. M. M., A. O. Sliekers, G. Lavik, M. Schmid, B. B. Jørgensen, J. G. Kuenen, J. S. Sinninghe Damsté, M. Strous and M. S. M. Jetten: An­aer­obic am­monium ox­id­a­tion by anam­mox bac­teria in the Black Sea. Nature 422:608-611 (2003). PubMed
Larkum, A. W. D., E.-M. W. Koch, M. Kühl: Dif­fus­ive bound­ary lay­ers and pho­to­syn­thesis of the epi­lithic algal com­munity of coral reefs. Mar­ine Bio­logy 142:1073-1082 (2003). Springer
Neretin, L. N., M. E. Böttcher and V. A. Grinenko: Sul­fur iso­tope geo­chem­istry of the Black Sea wa­ter column. Chem­ical Geo­logy 200:59-69 (2003). ScienceDirect
Neretin, L. N., C. Pohl, G. Jost, T. Leipe and F. Pollehne: Man­ganese cyc­ling in the Got­land Deep, Baltic Sea. Mar­ine Chem­istry 82:125-143 (2003). ScienceDirect
Neretin, L., A. Schippers, A. Pernthaler, K. Hamann, R. Amann and B. B. Jørgensen: Quan­ti­fic­a­tion of dis­sim­il­at­ory (bi)sulph­ite re­ductase gene ex­pres­sion in Desulfobacterium autotrophicum us­ing real-time RT-PCR. En­vir­on­mental Mi­cro­bi­o­logy 5(8):660-671 (2003). PubMed
Revsbech, N. P. and B. B. Jørgensen: The role of mi­croor­gan­isms in aquatic en­vir­on­ments (in Dan­ish), p. 365-387. In Top re­search at the Uni­versity of Aar­hus. A. W. Hansen et. al. (eds.), Acta Jut­land­ica 78, Aar­hus Uni­versitets­for­lag (2003). Full Text
Schouten, S., E. C. Hopmans, A. Forster, Y. van Breugel, M.M.M. Kuypers, and J.S. Sinninghe Damsté: Ex­tremely high sea-sur­face tem­per­at­ures at low lat­it­udes dur­ing the middle Creta­ceous as re­vealed by ar­chaeal mem­brane lip­ids. Geo­lo­gical So­ci­ety of Amer­ica 31(12):1069-1072 (2003). Geology
Sinninghe Damsté, J. S., M. M. M. Kuypers, S. Schouten, S. Schulte and J. Rullkötter: The ly­copane/​C31 n-al­kane ra­tio as a proxy to as­sess pa­laeox­icity dur­ing sed­i­ment de­pos­ition. Earth and Plan­et­ary Sci­ence Let­ters 209:215-226 (2003). Igitur
Treude, T., A. Boetius, K. Knittel, K. Wallmann and B. B. Joergensen: An­aer­obic ox­id­a­tion of meth­ane above gas hy­drates at Hy­drate Ridge, NE Pa­cific. Mar­ine Eco­logy Pro­gress Series 264: 1-14 (2003). ResearchGate Full Text
Werner, U., Polerecky L., Walpersdorf E., Franke U., Billerbeck M., Böttcher M., Ferdelman T., and D. de Beer: Or­ganic mat­ter de­grad­a­tion pro­cesses in per­meable sed­i­ments – meth­od­o­lo­gical ap­proaches. Forschung­szen­trum Ter­ramare Berichte 12:122-125 (2003). Full Text
Wefer, G., D. Billet, D. Hebbeln, B. B. Jørgensen, M. Schlüter, T. van Weering (eds.): Ocean Mar­gin Sys­tems. Springer Ver­lag, Ber­lin, ISBN: 978-3-540-43921-9 (2003), 495 pp. Springer
Zink K.-G., H. Wilkens, U. Disko, M. Elvert, B. Horsfield: In­tact phos­phol­ipids-mi­cro­bial "life mark­ers" in mar­ine deep sub­sur­face sed­i­ments. Or­ganic Geo­chem­istry, 34:755-769 (2003). ScienceDirect
Diploma theses
Batel, Stephanie: Biogeo­chemische Um­satzprozesse in einem tidalen Ober­flächensed­i­ment der süd­lichen Nord­see. Uni­versität Olden­burg (2003).
Löbner, Heiko: Der reg­u­lat­or­ische Ein­fluß der Sulfat-und Meth­ankonzen­tra­tion auf die an­aer­obe Meth­an­ox­id­a­tion in mar­inen Sed­i­men­ten (2003).
Vamvakoupolos, Kyriakos: En­twicklung einer Ein­bettungs­meth­ode für die Un­ter­suchung in­tak­ter Sed­i­ment­struk­turen mit Fokus auf die dort lebenden Mik­roor­gan­is­men (2003).
Ph.D. theses
Finke, Niko: The role of volat­ile fatty acids and hy­dro­gen in the de­grad­a­tion of or­ganic mat­ter in mar­ine sed­i­ments. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003),182pp.
Kallmeyer, Jens: Sulfate re­duc­tion in the deep bio­sphere. Berichte aus dem Fachbereich Geowis­senschaften der Uni­versität Bre­men Nr. 217, Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 178pp.
Habilitation theses
Böttcher, Michael: Con­tri­bu­tions to the biogeo­chem­istry of early dia­gen­etic pro­cesses in con­tin­ental mar­gin sed­i­ments with spe­cial re­gard to man­ganese and stable iso­topes (S, O). (2003).

Mi­cro­sensor Group

Abed, R.M.M., S. Golubic, F. Garacia-Pichel, G.F. Camoin and S. Sprachta: Char­ac­ter­iz­a­tion of Mi­cro­bi­al­ite-Form­ing Cy­anobac­teria in a Trop­ical La­goon: Tike­hau Atoll, Tuamotu, French Poly­ne­sia. J. Phycol. 39:862-873 (2003).
Al-Horani, F. A., S. M. Al-Moghrabi, D. de Beer: Mi­cro­sensor study of pho­to­syn­thesis and cal­ci­fic­a­tion in the scler­ac­tinian coral, Galaxea fascicularis: act­ive in­ternal car­bon cycle. Journal of Ex­per­i­mental Mar­ine Bio­logy and Eco­logy 288:1-15 (2003). ScienceDirect
Al-Horani, F. A., S.M. Al-Moghrabi, D. de Beer: The mech­an­ism of cal­ci­fic­a­tion and its re­la­tion to pho­to­syn­thesis and res­pir­a­tion in the scler­ac­tinian coral Galaxea fascicularis. Mar­ine Bio­logy 142:419-426 (2003). Springer
Altmann, D., P. Stief, R. Amann, D. de Beer and A. Schramm: In situ dis­tri­bu­tion and activ­ity of ni­tri­fy­ing bac­teria in fresh­wa­ter sed­i­ment. En­vir­on­mental Mi­cro­bi­o­logy 5(9):798-803 (2003). PubMed
Burke, C. S., L. Polerecky, and B. D. MacCraith: En­hanced poly­mer wave­guide plat­forms for ab­sorp­tion-based op­tical chem­ical sensors. Proc. SPIE 4876:848-855 (2003).
Gieseke, A., L. Bjerrum, M. Wagner and R. Amann: Struc­ture and activ­ity of mul­tiple ni­tri­fy­ing bac­terial pop­u­la­tions co-ex­ist­ing in a biofilm. En­vir­on­mental Mi­cro­bi­o­logy 5(5):355-369 (2003). PubMed
Grossart, H.-P., T. Kiørboe, K. Tang and H. Ploug: Bac­terial Col­on­iz­a­tion of Particles: Growth and In­ter­ac­tions. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69:3500-3509 (2003). PubMed Full Text
Jonkers, H. M. and R. M. M. Abed: Iden­ti­fic­a­tion of aer­obic het­ero­trophic bac­teria from the photic zone of a hy­per­saline mi­cro­bial mat. Aquatic Mi­cro­bial Eco­logy 30:127-133 (2003). AME
Jonkers, H. M., R. Ludwig, R. De Wit, O. Pringault, G. Muyzer, H. Niemann, N. Finke and D. De Beer: Struc­tural and func­tional ana­lysis of a mi­cro­bial mat eco­sys­tem from a unique per­man­ent hy­per­saline in­land lake: 'La Salada de Chiprana' (NE Spain). FEMS Mi­cro­bi­o­logy Eco­logy 44:175-189 (2003). PubMed
Kiorboe, T., K. Tang, H.-P. Grossart and H. Ploug: Dy­nam­ics of Mi­cro­bial Com­munit­ies on Mar­ine Snow Ag­greg­ates: Col­on­iz­a­tion, Growth, De­tach­ment and Graz­ing Mor­tal­ity of At­tached Bac­teria. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(6):3036-3047 (2003). PubMed Full Text
Okabe, S., C.M. Santegoeds, D. de Beer: Ef­fect of Ni­trite and Ni­trate on In Situ Sulf­ide Pro­duc­tion in an Ac­tiv­ated Sludge Im­mob­il­ized Agar Gel Film as De­term­ined by Use of Mi­cro­elec­trodes. Bi­o­tech­no­logy and Bioen­gin­eer­ing 81(5):570-577 (2003). PubMed
Passow, U., A. Engel and H. Ploug: The role of ag­greg­a­tion for the dis­sol­u­tion of di­atom frust­ules. FEMS Mi­cro­bi­o­logy Eco­logy 46:247-255 (2003). PubMed
Stief, P., A. Schramm, D. Altmann and D. de Beer: Tem­poral vari­ation of ni­tri­fic­a­tion rates in ex­per­i­mental fresh­wa­ter sed­i­ments en­riched with am­mo­nia or ni­trite. FEMS Mi­cro­bi­o­logy Eco­logy 46:63-71 (2003). PubMed
van Keulen, G., H. M. Jonkers, D. Claessen, L. Dijkhuizen and H. A. B. Wösten: Notes. Dif­fer­en­ti­ation and An­aero­bi­osis in Stand­ing Li­quid Cul­tures of Streptomyces coelicolor. Journal of Bac­teri­ology 185:1455-1458 (2003). PubMed Full Text
Ph.D. theses
Altmann, Dörte: Ni­tri­fic­a­tion in fresh­wa­ter sed­i­ments as stud­ied with mi­cro­sensors and fluor­es­cence in situ hy­brid­iz­a­tion. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 110p.
Grunwald, Björn: Op­toelektron­is­che Meßsysteme ho­her ört­licher Au­flösung für pho­to­trophe Or­gan­is­men. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 102pp.

Flux Group

Aberle, N. and U. Witte: Deep-sea mac­ro­fauna ex­posed to a sim­u­lated sed­i­ment­a­tion event in the abyssal NE At­lantic: in situ pulse-chase ex­per­i­ments us­ing 13C-la­belled phyto­de­tritus. Mar­ine Eco­logy Pro­gress Series 251:37-47 (2003). MEPS Full Text
Aspetsberger, F., F. Huber, S. Kargl, B. Scharinger, P. Peduzzi and T. Hein: Par­tic­u­late or­ganic mat­ter dy­nam­ics in a river flood­plain sys­tem: im­pact of hy­dro­lo­gical con­nectiv­ity. Archives of Hy­dro­bi­o­logy 156:23-42 (2003). Ingenta
Berg, P., H. Røy, F. Janssen, V. Meyer, B. B. Jørgensen, M. Huettel and D. de Beer: Oxy­gen up­take by aquatic sed­i­ments meas­ured with a novel non-in­vas­ive eddy-cor­rel­a­tion tech­nique. Mar­ine Eco­logy Pro­gress Series 261:75-83 (2003). MEPS Full Text
Burnett, W., H. Bokuniewicz, M. Huettel, W. S. Moore and M. Taniguchi: Ground­wa­ter and pore wa­ter in­puts to the coastal zone. Biogeo­chem­istry 66:3-33 (2003). Springer
Fabricius, K., C. Wild, E. Wolanski and D. Abele: Ef­fect of trans­par­ent ex­o­poly­mer particles and muddy ter­ri­gen­ous sed­i­ments on the sur­vival of hard coral re­cruits. Es­tu­ar­ine, Coastal and Shelf Sci­ence 57:613-621 (2003). ScienceDirect
Forster, S., A. Khalili and J. Kitlar: Vari­ation of non­local ir­rig­a­tion in a sub­tidal benthic com­munity. Journal of Mar­ine Re­search 61:335-357 (2003). Ingenta Full Text
Glud, R. N., J. K. Gundersen, H. Røy and B. B. Jørgensen: Sea­sonal dy­nam­ics of benthic O2 up­take in a semi en­closed bay: Im­port­ance of dif­fu­sion and faunal activ­ity. Lim­no­logy and Ocean­o­graphy 48(3):1265-1276 (2003). CiteSeerX Full Text
Hensen, C., M. Zabel, K. Pfeifer, T. Schwenk, S. Kasten, N. Riedinger, H. D. Schulz and A. Boetius: Con­trol of sulfate pore-wa­ter pro­files by sed­i­ment­ary events and the sig­ni­fic­ance of an­aer­obic ox­id­a­tion of meth­ane for the burial of sul­fur in mar­ine sed­i­ments. Geochim­ica et Cosmochim­ica Acta, Vol. 67, No. 14: 2631-2647 (2003). ScienceDirect
Huettel, M., H. Røy, E. Precht and S. Ehrenhauss: Hy­dro­dynam­ical im­pact on biogeo­chem­ical pro­cesses in aquatic sed­i­ments. Hy­dro­bi­o­lo­gia 494:231-236 (2003). Springer
Khalili, A. and I. S. Shivakumara: Non-Dar­cian ef­fects on the on­set of con­vec­tion in a por­ous layer with through­flow. Trans­port in Por­ous Me­dia 53:245-263 (2003). Springer
Khalili, A., I. S. Shivakumara and S. P. Suma: Con­vect­ive in­stabil­ity in su­per­posed fluid and por­ous lay­ers with through­flow. Trans­port in Por­ous Me­dia 51:1-18 (2003). Springer
Precht, E. and M. Huettel: Ad­vect­ive pore wa­ter ex­change driven by sur­face grav­ity waves and its eco­lo­gical im­plic­a­tions. Lim­no­logy and Ocean­o­graphy 48(4):1674-1684 (2003). ASLO Full Text
Rasheed, M., M. Badran and M. Huettel: In­flu­ence of sed­i­ment per­meab­il­ity and min­eral com­pos­i­tion on or­ganic mat­ter de­grad­a­tion in three sed­i­ments from the Gulf of Aqaba, Red Sea. Es­tu­ar­ine, Coastal and Shelf Sci­ence 57: 369-384 (2003). ScienceDirect Full Text
Rasheed, M., M. Badran and M. Huettel: Par­tic­u­late mat­ter fil­tra­tion and sea­sonal nu­tri­ent dy­nam­ics in per­meable car­bon­ate and silic­ate sands of the Gulf of Aqaba, Red Sea. Coral Reefs 22: 167-177 (2003). Springer
Rusch, A., M. Huettel, C. E. Reimers, G. L. Taghon and C. M. Fuller: Activ­ity and dis­tri­bu­tion of bac­terial pop­u­la­tions in Middle At­lantic Bight shelf sands. FEMS Mi­cro­bi­o­logy Eco­logy 44:89-100 (2003). PubMed
Viollier, E., C. Rabouille, S. E. Apitz, E. Breuer, G. Chaillou, K. Dedieu, Y. Furakawa, C. Grenz, P. Hall, F. Janssen, J. L. Morford, J.-C. Poggiale, S. Roberts, T. Shimmield, M. Taillefert, A. Tengberg, F. Wenzhöfer and U. Witte: Re­view Art­icle: Benthic biogeo­chem­istry: state of the art tech­no­lo­gies and guidelines for the fu­ture of in situ sur­vey. Journal of Ex­per­i­mental Mar­ine Bio­logy and Eco­logy 285-286: 5-31 (2003). ScienceDirect
Witte, U., N. Aberle, M. Sand and F. Wenzhöfer: Rapid re­sponse of a deep-sea benthic com­munity to POM en­rich­ment: an in situ ex­per­i­mental study. Mar­ine Eco­logy Pro­gress Series 251:27-36 (2003). MEPS Full Text
Witte, U., F. Wenzhöfer, S. Sommer, A. Boetius, P. Heinz, N. Aberle, M. Sand, A. Cremer, W.-R. Abraham, B. B. Jørgensen and O. Pfannkuche: In situ ex­per­i­mental evid­ence of the fate of a phyto­de­tritus pulse at the abyssal sea floor. Nature 424:763-766 (2003). PubMed
Ph.D. theses
Ehrenhauß, Sandra: Im­pact of pore wa­ter ad­vec­tion on trans­port and re­min­er­al­iz­a­tion of plank­tonic di­at­oms in per­meable shelf sed­i­ments. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 146pp.
Precht, Elimar: Ad­vect­ive in­ter­fa­cial ex­change in per­meable sed­i­ments driven by sur­face grav­ity waves and its eco­lo­gical con­sequences. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 144pp.
Røy, Hans: Dy­namic struc­ture and func­tion of the dif­fus­ive bound­ary layer at the sea­floor. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 160pp.
Wild, Christian: Sed­i­ment-wa­ter coup­ling in per­meable shal­low wa­ter sed­i­ments with spe­cial em­phasis on car­bon­ate sands and the cyc­ling of coral ex­ud­ates in reef en­vir­on­ments. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 197pp.

De­part­ment of Mi­cro­bi­o­logy

Gade, D., J. Thiermann, D. Markowsky and R. Rabus: Eval­u­ation of two-di­men­sional dif­fer­ence gel elec­tro­phoresis for pro­tein pro­fil­ing. Journal of Mo­lecu­lar Mi­cro­bi­o­logy and Bi­o­tech­no­logy 5:240-251 (2003). PubMed
Glöckner, F. O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, R. Rabus, H. Schlesner, R. Amann and R. Reinhardt: Com­plete gen­ome se­quence of the mar­ine planc­to­my­cete Pirellula sp. strain 1. PNAS 100(14):8298-8303 (2003). PubMed Full Text
Havemann, S.A.,V. Brunelle, J.K. Voordouw, G. Voordouw, J.F. Heidelberg and R. Rabus: Gene ex­pres­sion ana­lysis of en­ergy meta­bol­ism mutants of Desulfovibrio vulgaris Hilden­bor­ough in­dic­ates an im­port­ant role for al­co­hol de­hyd­ro­genase. Journal of Bac­teri­ology 185(15):4345-4353 (2003). PubMed Full Text
Herborn, C. U., N. Papanikolaou, R. Reszka, K. Grünberg, D. Schüler and J. F. Debatin: Mag­neto­so­men als bio­lo­gisches Mod­ell der Eis­en­bindung: Mes­sung der Re­lax­iv­ität in der MRT. Forts­chr. Rönt­gen­str. 175(6):830-834 (2003). PubMed
Heyen, U. and D. Schüler: Growth and mag­neto­some form­a­tion by mi­croaero­philic Magnetospirillum strains in an oxy­gen-con­trolled fer­mentor. Ap­plied Mi­cro­bi­o­logy and Bi­o­tech­no­logy 61:536-544 (2003). PubMed
Kniemeyer, O., T. Fischer, H. Wilkes, F.O. Glöckner and F. Widdel: An­aer­obic de­grad­a­tion of ethyl­ben­zene by a new type of mar­ine sulfate-re­du­cing bac­terium. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(2):760-768 (2003). PubMed Full Text
Könneke, M. and F. Widdel: Ef­fect of growth tem­per­at­ure on cel­lu­lar fatty acids in sulph­ate-re­du­cing bac­teria. En­vir­on­mental Mi­cro­bi­o­logy 5(11):1064-1070. (2003). PubMed
Krüger, M. and P. Frenzel: Ef­fects of N-fer­til­iz­a­tion on CH4 ox­id­a­tion and pro­duc­tion, and con­sequences for CH4 emis­sions from mi­cro­cosms and rice fields. Global Change Bio­logy 9:773-784 (2003). Wiley
Krüger, M., A. Meyerdierks, F.O. Glöckner, R. Amann, F. Widdel, M. Kube, R. Reinhardt, J. Kahnt, R. Böcher, R.K. Thauer and S. Shima: A con­spicu­ous nickel pro­tein in mi­cro­bial mats that ox­id­ize meth­ane an­aer­obic­ally. Nature 426:878-881 (2003). PubMed
Probian, C., A. Wülfing and J. Harder: An­aer­obic min­er­al­iz­a­tion of qua­tern­ary car­bon atoms: isol­a­tion of de­ni­tri­fy­ing bac­teria on Pivalic Acid (2,2-Di­methyl­pro­pionic Acid). Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(3):1866-1870 (2003). PubMed Full Text
Schübbe, S., M. Kube, A. Scheffel, C. Wawer, U. Heyen, A. Meyerdierks, M. Madkour, F. Mayer, R. Reinhardt and D. Schüler: Char­ac­ter­iz­a­tion of a spon­tan­eous non­mag­netic mutant of Magnetospirillum gryphiswaldense re­veals a large de­le­tion com­pris­ing a pu­tat­ive mag­neto­some is­land. Journal of Bac­teri­ology 185(19):5779-5790 (2003). PubMed
Schultheiss, D. and D. Schüler: De­vel­op­ment of a ge­netic sys­tem for Magnetospirillum gryphiswaldense. Archives of Mi­cro­bi­o­logy 179:89-94 (2003). PubMed
Tan, Z., T. Hurek, B. Reinhold-Hurek: Brief Re­port. Ef­fect of N-fer­til­iz­a­tion, plant gen­o­type and en­vir­on­mental con­di­tions on nifH gene pools in roots of rice. En­vir­on­mental Mi­cro­bi­o­logy 5(10):1009-1015 (2003). PubMed
Wilkes, H., S. Kühner, C. Bolm, T. Fischer, A. Classen, F. Widdel and R. Rabus: Form­a­tion of n-al­kane- and cyc­loalkane-de­rived or­ganic acids dur­ing an­aer­obic growth of a de­ni­tri­fy­ing bac­terium with crude oil. Or­ganic Geo­chem­istry 34: 1313-1323 (2003). ScienceDirect
Diploma theses
Gorbik-Weiss, Galina: Moleku­lar­bio­lo­gis­che Un­ter­suchun­gen zur Ex­istenz von Ger­a­ni­ol­de­hyd­ro­genasen in Thauera Arten (2003).
Holler, Thomas: An­reicher­ung und Iso­lier­ung von mar­inen Mik­roor­gan­is­men auf Licht und or­gan­is­cher Sub­stanz (2003).
Kallerhoff, Birte: Pro­teo­mis­che Un­ter­suchun­gen an Desulfobacterium autotrophicum bei Änder­ungen des Wach­stums­sub­strats (2003).
Selz, Christine: Meth­ano­gene und sulfatre­duzi­er­ende Mik­roor­gan­is­men an einem mar­inen Stan­dort mit an­aer­ober Meth­an­ox­id­a­tion (Håkon Mosby Sch­lam­mvulkan)" (2003).
Stührmann, Torben: En­zymat­ische und pro­teo­mis­che Un­ter­suchun­gen an Rhodopirellula baltica (2003).
Wöhbrandt, Lars: Transkrip­tion­elle Reg­u­la­tion des an­aer­oben Al­kyl­ben­zol-Ab­baus im de­ni­tri­f­iz­i­er­enden Bak­terium Stamm EbN1 (2003).
Ph.D. theses
Dinh, Hang T.: Mi­cro­bi­o­lo­gical study of an­aer­obic cor­ro­sion of iron. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 98pp.
Nauhaus, Katja: Mik­robi­o­lo­gis­che Stud­ien zur an­aer­oben Ox­id­a­tion von Methan (AOM). Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 183pp.
Wülfing, Annika: Moleku­lar­bio­lo­gis­che Charak­ter­is­ier­ung des an­aer­oben Monoter­penab­baus von Alcaligenes defragrans, Gene für eine Ger­a­niol-De­hyd­ro­genase und eine CoA Li­g­ase (2003).

De­part­ment of Mo­lecu­lar Eco­logy

Altmann, D., P. Stief, R. Amann, D. de Beer and A. Schramm: In situ dis­tri­bu­tion and activ­ity of ni­tri­fy­ing bac­teria in fresh­wa­ter sed­i­ment. En­vir­on­mental Mi­cro­bi­o­logy 5(9):798-803 (2003). PubMed
Beardsley, C., J. Pernthaler, W. Wosniok and R. Amann: Are read­ily cul­tur­able bac­teria in coastal North Sea wa­ters sup­pressed by se­lect­ive graz­ing mor­tal­ity? Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(5):2624-2630 (2003). PubMed Full Text
Behrens, S., B. M. Fuchs, F. Mueller and R. Amann: Is the in situ ac­cess­ib­il­ity of the 16S rRNA of Escherichia coli for Cy3-labeled oli­go­nuc­leotide probes pre­dicted by a three-di­men­sional struc­ture model of the 30S ri­bosomal sub­unit? Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(8):4935-4941 (2003). PubMed Full Text
Behrens, S., C. Rühland, J. Inácio, H. Huber, A. Fonseca, I. Spencer-Martins, B. M. Fuchs and R. Amann: In situ ac­cess­ib­il­ity of small-sub­unit rRNA of mem­bers of the do­mains Bac­teria, Ar­chaea, and Eu­carya to Cy3-labeled oli­go­nuc­leotide probes. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(3):1748-1758 (2003). PubMed Full Text
Brinkmeyer, R., K. Knittel, J. Jürgens, H. Weyland, R. Amann and E. Helmke: Di­versity and struc­ture of bac­terial com­munit­ies in Arc­tic versus Ant­arc­tic Pack Ice. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(11):6610-6619 (2003). PubMed Full Text
Burkert, U., F. Warnecke, D. Babenzien, E. Zwirnmann and J. Pernthaler: Mem­bers of a read­ily en­riched β-pro­teo­bac­terial clade are com­mon in sur­face wa­ters of a humic lake. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(11):6550-6559 (2003). PubMed Full Text
Diederichs, S., C. Beardsley and E.-J. Cleven: De­tec­tion of in­ges­ted bac­teria in benthic celi­ates us­ing fluor­es­cence in situ hy­brid­iz­a­tion. Sys­tem­atic and Ap­plied Mi­cro­bi­o­logy 26:624-630 (2003). PubMed
Dinh, H. T., J. Kuever, M. Mußmann, A. W. Hassel, M. Stratmann and F. Widdel: Iron cor­ro­sion by novel an­aer­obic mi­croor­gan­isms. Nature 427:829-832 (2003). PubMed
Gieseke, A., L. Bjerrum, M. Wagner and R. Amann: Struc­ture and activ­ity of mul­tiple ni­tri­fy­ing bac­terial pop­u­la­tions co-ex­ist­ing in a biofilm. En­vir­on­mental Mi­cro­bi­o­logy 5(5):355-369 (2003). PubMed
González-Toril, E., E. Llobet-Brossa, E. O. Casamayor, R. Amann and R. Amils: Mi­cro­bial eco­logy of an ex­treme acidic en­vir­on­ment, the Tinto river. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(8):4853-4865 (2003). PubMed Full Text
Inácio, J., S. Behrens, B. M. Fuchs, Á. Fonseca, I. Spencer-Martins and R. Amann: In situ ac­cess­ib­il­ity of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oli­go­nuc­leotide probes com­pris­ing the D1 and D2 do­mains. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(5):2899-2905 (2003). PubMed Full Text
Knittel, K., A. Boetius, A. Lemke, H. Eilers, K. Lochte, O. Pfannkuche, P. Linke: Activ­ity, dis­tri­bu­tion, and di­versity of sulfate re­du­cers and other bac­teria in sed­i­ments above gas hy­drate (Cas­ca­dia Mar­gin, Ore­gon). Geo­mic­ro­bi­o­logy Journal 20:269-294 (2003). TFO
Krüger, M., A. Meyerdierks, F. O. Glöckner, R. Amann, F. Widdel, M. Kube, R. Reinhardt, J. Kahnt, R. Böcher, R. K. Thauer and S. Shima: A con­spicu­ous nickel pro­tein in mi­cro­bial mats that ox­id­ize meth­ane an­aer­obic­ally. Nature 426: 878-881 (2003). PubMed
Mußmann, M., H. N. Schulz, B. Strotmann, T. Kjær, L. P. Nielsen, R. A. Rosselló-Mora, R. I. Amann and B. B. Jørgensen: Phylo­geny and dis­tri­bu­tion of ni­trate-stor­ing Beggiatoa spp. in coastal mar­ine sed­i­ments. En­vir­on­mental Mi­cro­bi­o­logy 5(6):523-533 (2003). PubMed
Neretin, L. N., A. Schippers, A. Pernthaler, K. Hamann, R. Amann and B. B. Jorgensen: Quan­ti­fic­a­tion of dis­sim­il­at­ory (bi)sulph­ite re­ductase gene ex­pres­sion in Desulfobacterium autotrophicum us­ing real-time RT-PCR. En­vir­on­mental Mi­cro­bi­o­logy 5(8):660-671 (2003). PubMed
Peplies, J., F.O. Glöckner, R. Amann: Op­tim­iz­a­tion Strategies for DNA Mi­croar­ray - Based De­tec­tion of Bac­teria with 16S rRNA-Tar­get­ing Oli­go­nuc­leotide Probes. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(3):1397-1407 (2003). PubMed Full Text
Pernthaler, J. and R. Amann: Ein vol­lauto­mat­isches Zählmik­roskop für die Um­welt­mik­robi­o­lo­gie. GIT Labor­fachzeits­chrift 6:627-629 (2003). Full Text
Pernthaler, J., A. Pernthaler and R. Amann: Auto­mated enu­mer­a­tion of groups of mar­ine pi­co­plank­ton after fluor­es­cence in situ hy­brid­iz­a­tion. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(5):2631-2637 (2003). PubMed Full Text
Schramm, A., S. K. Davidson, J. A. Dodsworth, H. L. Drake, D. A. Stahl and N. Dubilier: Acidovorax-like en­dosym­bionts in the neph­ridia of earth­worms. En­vir­on­mental Mi­cro­bi­o­logy 5(9):804-809 (2003). PubMed
Sekar, R., A. Pernthaler, J. Pernthaler, F. Warnecke, T. Posch and R. Amann: An im­proved pro­tocol for the quan­ti­fic­a­tion of fresh­wa­ter Actinobacteria by fluor­es­cence in situ hy­brid­iz­a­tion. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(5):2928-2935 (2003). PubMed Full Text
Teske, A., Dhillon A., and M.L. Sogin: Ge­n­omic mark­ers of an­cient an­aer­obic mi­cro­bial path­ways: Sulfate re­duc­tion, meth­ano­gen­esis, and meth­ane ox­id­a­tion. Biol. Bull. 204:186-191 (2003). PubMed Full Text
Zubkov, M. V., B. M. Fuchs, G. A. Tarran, P. H. Burkill and R. Amann: High rate of up­take of or­ganic ni­tro­gen com­pounds by Prochlorococcus cy­anobac­teria as a key to their dom­in­ance in oli­go­trophic oceanic wa­ters. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(2):1299-1304 (2003). PubMed Full Text
Diploma theses
Allers, Elke: Moleku­lar­bio­lo­gis­che Charak­ter­is­ier­ung der mik­robi­el­len Ge­meinsch­aft in Kor­al­le­nexud­aten (2003).
Baier, Adrian: Ist Dif­fer­en­tial Dis­play eine geeignete Meth­ode zur Ana­lyse dif­fer­en­ti­eller Gen­ex­pres­sion von um­wel­trel­ev­anten Mik­roor­gan­is­men? Un­ter­suchun­gen am psychro­philen, sulfatre­duzi­er­enden Bak­terium Desulfotalea psychrophila. Dip­lo­marbeit Uni­versität Bre­men (2003).
Keller, Linda: Herbst­sukzes­sion und Akt­iv­ität der pelagis­chen Bak­ter­i­enge­meinsch­aft in der Deutschen Bucht (200, 3).
Perner, Miriam: Biogeo­chemische und mik­robi­o­lo­gis­che Charak­ter­is­ier­ung mar­iner Sed­i­mente vor Elba - ein Beitrag zur ökosys­tem­aren Ana­lyse bak­ter­i­ensym­biontischer Oli­go­chaeten. Uni­versität Ham­burg (2003).
Wöbken, Dagmar: Ver­gleichende moleku­lar­bio­lo­gis­che Ana­lyse von Bak­terioplank­ton des ox­is­chen und sub­ox­is­chen mar­inen Pela­gi­als. Dip­lo­marbeit Uni­versität Han­nover (2003).
Ph.D. theses
Beardsley, Christine: In situ dy­nam­ics and pred­ator-prey in­ter­ac­tions in the mi­cro­bial plank­ton of the North Sea Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 103pp.
Behrens, Sebastian: Meth­od­o­lo­gical as­pects of fluor­es­cence in situ hy­brid­iz­a­tion for the iden­ti­fic­a­tion of mi­croor­gan­isms. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 163pp.
Brinkmeyer, Robin: Mo­lecu­lar char­ac­ter­iz­a­tion of bac­terial com­munit­ies in Arc­tic sea ice. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 153pp.
Kube, Michael: Se­quen­zier­ung und Struk­turen von Pirellula sp. Stamm 1. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 167pp.
Habilitation
Pernthaler, Jakob: Pop­u­la­tion­söko­lo­gis­che Un­ter­suchun­gen am mar­inen und lim­nischen Bak­terioplank­ton. Ha­bil­it­a­tion Uni­versität Bre­men, Bre­men ( 2003).

Mi­cro­bial Ge­n­om­ics Group

Glöckner, F. O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, R. Rabus, H. Schlesner, R. Amann and R. Reinhardt: Com­plete gen­ome se­quence of the mar­ine planc­to­my­cete Pirellula sp. strain 1. PNAS 100(14):8298-8303 (2003). PubMed Full Text
Kniemeyer, O., T. Fischer, H. Wilkes, F. O. Glöckner and F. Widdel: An­aer­obic de­grad­a­tion of ethyl­ben­zene by a new type of mar­ine sulfate-re­du­cing bac­terium. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(2):760-768 (2003). PubMed Full Text
Krüger, M., A. Meyerdierks, F. O. Glöckner, R. Amann, F. Widdel, M. Kube, R. Reinhardt, J. Kahnt, R. Böcher, R. K. Thauer and S. Shima: A con­spicu­ous nickel pro­tein in mi­cro­bial mats that ox­id­ize meth­ane an­aer­obic­ally. Nature 426:878-881 (2003). PubMed
Peplies, J., F. O. Glöckner and R. Amann: Op­tim­iz­a­tion strategies for DNA mi­croar­ray-based de­tec­tion of bac­teria with 16S rRNA-tar­get­ing oli­go­nuc­leotide probes. Ap­plied and En­vir­on­mental Mi­cro­bi­o­logy 69(3):1397-1407 (2003). PubMed Full Text
Peplies, J., S. C. K. Lau, J. Pernthaler, R. Amann and F. O. Glöckner: Brief re­port. Ap­plic­a­tion and val­id­a­tion of DNA mi­croar­rays for the 16S rRNA-based ana­lysis of mar­ine bac­terioplank­ton. En­vir­on­mental Mi­cro­bi­o­logy 6(6):638–645 (2003). PubMed
Ph.D. thesis
Peplies, Jörg: Hoch­par­al­lele Ana­lyse natür­licher mik­robi­eller Lebens­ge­meinsch­aften durch ober­flächenge­bundene Oli­go­nukleot­id­sonden. Dis­ser­ta­tion Uni­versität Bre­men, Bre­men (2003), 135pp.
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