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Pub­lic­a­tions 2016

Amann, R., and R. Ros­sello-Mora (2016). After all, only mil­lions? mBio 7:e00999-16. (doi:10.1128/mBio.00999-16).
Barbeyron, T., F. Thomas, V. Barbe, H. Teeling, C. Schenow­itz, C. Dossat, A. Goes­mann, C. Leb­lanc, F.O. Glöck­ner, M. Czjzek, R. Amann, and G. Michel (2016). Hab­itat und taxon as driv­ing forces of car­bo­hydrate cata­bol­ism in mar­ine het­ero­trophic bac­teria: ex­ample of the model al­gae-as­so­ci­ated bac­terium Zobellia galactanivorans DsijT. En­viron. Mi­cro­biol. 18:4610-4627. (doi:10.1111/1462-2920.13584).
Bennke, C.M., G. Reintjes, M. Schattenhofer, A. Ellrott, J. Wulf, M. Zeder, and B.M. Fuchs (2016). Modi­fic­a­tion of a high-through­put auto­matic mi­cro­bial cell enu­mer­a­tion sys­tem for ship­board ana­lyses. En­viron. Mi­cro­biol. 82:3289-3296. (doi:10.1128/AEM.03931-15).
Bennke, C.M., K. Krüger, L. Kappelmann, S. Huang, A. Gobet, M. Schüler, V. Barbe, B.M. Fuchs, G. Michel, H. Teeling, and R.I. Amann (2016). Poly­sac­char­ide util­iz­a­tion loci of Bacteroidetes from two con­trast­ing open ocea sites in the North At­lantic. En­viron. Mi­cro­biol. 18:4456-4470. (doi:10.1111/1462-2920.13429).
Berg, J.S., D. Michel­lod, P. Pjevac, C. Mar­tinez-Perez, C.R.T. Buck­ner, P.F. Hach, C.J. Schubert, J. Milucka, and M.M.M. Kuypers (2016). In­tense cryptic mi­cro­bial iron cyc­ling in the low iron wa­ter column of the meromictic Lake Cadagno. En­viron. Mi­cro­biol. 18:5288-5302. (doi:10.1111/1462-2920.13587).
Bruder, L.M., M. Dörkes, B.M. Fuchs, W. Lud­wig, and W. Liebl (2016). Flow cyto­met­ric sort­ing of fecal bac­teria after in situ hy­brid­iz­a­tion with poly­nuc­leotide probes. Syst. Appl. Mi­cro­biol. 39:464-475. (doi:10.1016/j.syapm.2016.08.005).
Dyksma, S., K. Bischof, B.M. Fuchs, K. Hoff­mann, D. Meier, A. Meyerdierks, P. Pjevac, D. Probandt, M. Richter, R. Stepanaus­kas, and M. Mussmann (2016). Ubi­quit­ous Gammaproteobacteria dom­in­ate dark car­bon fix­a­tion in coastal sed­i­ments. ISME J. 10:1939-1953. (doi:10.1038/ismej.2015.257).
Flood, B.E., P. Fliss, D.S. Jones, G.J. Dick, S. Jain, A.-K. Kaster, M. Winkel, M. Mussmann, and J. Bailey (2016). Single-cell (meta-)ge­n­om­ics of a di­morphic Candidatus Thio­mar­gar­ita nel­sonii re­veals ge­n­omic plas­ti­city. Front. Mi­cro­biol. 7:e603. (doi:10.3389/fmicb.2016.00603).
Kruken­berg, V., K. Hard­ing, M. Richter, F.O. Glöck­ner, H.R. Gruber-Vodicka, B. Adam, J.S. Berg, K. Knittel, H.E. Te­get­meyer, A. Boe­t­ius, and G. We­gener (2016). Candidatus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­viron. Mi­cro­biol. 18:3073-3091. (doi:10.1111/1462-2920.13283).
Laso-Perez, R., G. We­gener, K. Knittel, F. Wid­del, K.J. Hard­ing, V. Kruken­berg, D.V. Meier, M. Richter, H.E. Te­get­meyer, D. Riedel, H.H. Rich­now, L. Ad­rian, T. Ree­mtsma, O.J. Lechten­feld, and F. Musat (2016). Ther­mo­philic ar­chaea ac­tiv­ate butan via al­kyl-coen­zyme M form­a­tion. Nature 539:396-401. (doi:10.1038/nature20152).
Mar­tinez-Perez, C., W. Mohr, C.R. Löscher, J. Dekaezemacker, S. Littmann, P. Yil­maz, N. Lehnen, B.M. Fuchs, G. Lavik, R.A. Schmitz, J. LaRoche, and M.M.M. Kuypers (2016). The small uni­cel­lu­lar diazo­trophic sym­biont, UCYN-A, is a key player in the mar­ine ni­tro­gen cycle. Nature Mi­cro­biol. 1:16163. (doi:10.1038/nmicrobiol.2016.163).
Meier, D., W. Bach, P.R. Gir­guis, H. Gruber-Vodicka, E.P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks (2016). Het­ero­trophic Proteobacteria in the vi­cin­ity of dif­fuse hy­dro­thermal vent­ing. En­viron. Mi­cro­biol. 18:4348-4368. (doi:10.1111/1462-2920.13304). 
Munoz, R., R. Ros­sello-Mora, and R. Amann (2016). Re­vised phylo­geny of Bacteroidetes and pro­posal of six­teen new taxa and two new com­bin­a­tions in­clud­ing Rhodothermaeota phyl. nov. Sys­tem. Appl. Mi­cro­biol. 39:281-296. (doi:10.1016/j.syapm.2016.04.004).
Pan­schin, I., M. Becher, S. Verbarg, C. Spöer, M. Ro­hde, M. Schüler, R.I. Amann, J. Harder, B.J. Tin­dall, and R. Hahnke (2016). De­scrip­tion of Gramella forsetii sp.nov., a mar­ine Flavobacteriaceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of Gramella gaetbulicola Cho et al. 2011. Int. J. Sys­tem. Evol. Mi­cro­biol. D-16-00552R2. (doi:10.1099/ijsem.0.001700).
Pizz­etti, I., F. Schulz, T. Tyml, B.M. Fuchs, R. Amann, M. Horn, and S. Fazi (2016). Chlamydial sea­sonal dy­nam­ics and isol­a­tion of ‘Candidatus Nep­tun­och­lamydia vex­il­lifer­ae’ from a Tyrrhe­nian coastal lake. En­viron. Mi­cro­biol. 18:2405-2417. (doi:10.1111/1462-2920.13111). 
Pizz­etti, I., G. Lupini, F.B. Aubry, F. Acri, B.M. Fuchs, and S. Fazi (2016). In­flu­ence of Po River run­off on the bac­terioplank­ton com­munity along trophic and sa­lin­ity gradi­ents in the North­ern Ad­reatic Sea. Mar. Ecol. 37:1386-1397. (doi:10.1111/maec.12355).
Raupach, M.J., R. Amann, Q.D. Wheeler, and C. Roos (2016). The ap­plic­a­tion of “-om­ics” tech­no­lo­gies for the clas­si­fic­a­tion and iden­ti­fic­a­tion of an­im­als. Org. Divers. Evol. 16:1-12. (doi:10.1007/s13127-015-0234-6).
Ruff, S.E., H. Kuh­fuß, G. We­gener, C. Lott, A. Ramette, J. Wied­ling, K. Knittel, and M. Weber (2016). Meth­ane seep in shal­low-wa­ter per­meable sed­i­ment har­bors high di­versity of an­aer­obic meth­an­o­trophic com­munit­ies, Elba, Italy. Front. Mi­cro­biol. 7:374. (doi:10.3389/fmicb.2016.00374).
Schi­mak, M.P., M. Kleiner, S. Wet­zel, M. Liebeke, N. Du­bilier, and B.M. Fuchs (2016). MiL-FISH: Mul­til­abeled oli­go­nuc­leotides for fluor­es­cence in situ hy­brid­iz­a­tion im­prove visu­al­iz­a­tion of bac­terial cells. En­viron. Mi­cro­biol. 82:62-70. (doi:10.1128/AEM.02776-15).
Stagars, M., E. Ruff, R. Amann, and K. Knittel (2016). High di­versity of an­aer­obic al­kane-de­grad­ing mi­cro­bial com­munit­ies in mar­ine seep sed­i­ments based on (1-methylal­kyl)suc­cin­ate syn­thase genes. Fron­ti­ers Mi­cro­biol. 6:1511. (doi:10.3389/fmicb.2015.01511).
Teeling, H., B.M. Fuchs, C.M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Wald­mann, C. Quast, F.O. Glöck­ner, J. Lu­cas, A. Wichels, G. Ger­dts, K.H. Wilt­shire, and R.I. Amann (2016). Re­cur­ring pat­terns in bac­terioplank­ton dy­nam­ics dur­ing coastal spring al­gae blooms. eLife 5:e11888. (doi:10.7554/eLife.11888).
We­gener, G., V. Kruken­berg, S.E. Ruff, M.Y. Keller­mann, and K. Knittel (2016). Meta­bolic cap­ab­il­it­ies of mi­croor­gan­isms in­volved in and as­so­ci­ated with the an­aer­obic ox­id­a­tion of meth­ane. Front. Mi­cro­biol. 7:e46. (doi:10.3389/fmicb.2016.00046). 
Winkel, M., V. Carvalho, T. Woyke, M. Richter, H.N. Schulz-Vogt, B. Flood, J. Bailey, and M. Mussmann (2016). Single-cell se­quen­cing of Thiomargarita re­veals ge­n­omic flex­ib­il­ity for ad­apt­a­tion to dy­namic redox con­di­tions. Front. Mi­cro­biol. 7:e964. (doi:10.3389/fmicb.2016.00964).

 

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