Publications 2020

Ahmerkamp, S., H.K. Marchant, C. Peng, D.Probandt, S. Littmann, M.M.M. Kuypers, M. Holtappels. (2020). The effect of sediment grain properties and porewater flow on microbial abundance and respiration in permeable sediments. Sci. Rep. 10:3573. (doi:10.1038/s41598-020-60557-7)

Alejandre-Colomo, C., J. Harder, B.M. Fuchs, R. Rosselló-Móra, R. Amann. (2020). High-throughput cultivation of heterotrophic bacteria during a spring phytoplankton bloom in the North Sea. Syst. Appl. Microbiol. 43:126066. (doi:10.1016/j.syapm.2020.126066)

Alejandre-Colomo, C., T. Viver, M.Urdiain, B. Francis, J. Harder, P. Kämpfer, R. Amann, and R. Rosselló-Móra. (2020). Taxonomic study of nine new Winogradskyella species occurring in the shallow waters of Helgoland Roads, North Sea. Proposal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella vidalii sp. nov., Winogradskyella forsetii sp. nov., Winogradskyella ludwigii sp. nov., Winogradskyella ursingii sp. nov., Winogradskyella wichelsiae sp. nov., and Candidatus “Winogradskyella atlantica” sp. nov. Syst. Appl. Microbiol. 43:126128. (doi:10.1016/j.syapm.2020.126128)

Alfiansah, Y.R., S. Peters, J. Harder, C. Hassenrück, and A. Gärdes. (2020). Structure and co‑occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white‑leg shrimp Penaeus vannamei aquaculture. Scient. Rep. 10:11980. (doi:10.1038/s41598-020-68891-6)

Assie, A., N. Leisch, V.D.Meier, H. Gruber-Vodicka, H.E. Tegetmeyer, A. Meyerdierks, M. Kleiner, T. Hinzke, S. Joye, M. Saxton, N. Dubilier, J.M. Petersen. (2020). Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). ISME J. 14:104-22. (doi:10.1038/s41396-019-0508-7)

Avci, B., K. Krüger, B.M. Fuchs, H. Teeling, R.I. Amann. (2020). Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ISME J. 14:1369-83. (doi:10.1038/s41396-020-0601-y)

Cho, H., C.Y. Hwang, J.G. Kim, S. Kang, K. Knittel, A. Choi, S.H. Kim, S.K. Rhee, E.Y. Yang, S. Lee, J.-H. Hyun. (2020). A unique benthic microbial community underlying the Phaeocystis antarctica-dominated Amundsen Sea polynya, Antarctica: a proxy for assessing the impact of global changes. Front. Mar. Sci. 6:797. (doi:10.3389/fmars.2019.00797)

Giljan, G., N.A. Kamennaya, A. Otto, D. Becher, A. Ellrott, V. Meyer, B.J. Murton, B.M. Fuchs, R.I. Amann, and M.V. Zubkov. (2020). Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the tropic Seamount. Scient. Rep. 10:4715. (doi:10.1038/s41598-020-61417-0)

Grieb, A., T.B. Francis, K. Krüger, L.H. Orellana Retamal, R.I. Amann, and B.M. Fuchs. (2020). Candidatus Abditibacter, a novel genus within the Cryomorphaceae, thriving in the North Sea. Syst. Appl. Microbiol. 43:126088. (doi:10.1016/j.syapm.2020.126088)

Hahn, C.J., R. Laso-Perez, F. Vulcano, K.-M. Vaziorakis, R. Stokke, I.H. Steen, A. Teske, M. Liebeke, K. Knittel, R. Amann and G. Wegener. (2020). "Candidatus Ethanoperedens," a thermophilic genus of Archaea mediating the anaerobic oxidation of ethane. mBio11:e00600-20. (doi:10.1128/mBio.00600-20)

Hoffmann, K., C. Bienhold, P. Buttigieg, K. Knittel, R. Laso-Pérez, J. Rapp, A. Boetius, and P. Offre. (2020). Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. ISME J. 14:1042-56.(doi:10.1038/s41396-020-0588-4 )

Kleindienst, S., and K. Knittel. (2020). Anaerobic hydrocarbon degrading sulfate-reducing bacteria at marine gas and oil seeps. In: Marine hydrocarbon seeps. Microbiology and Biogeochemistry of a global marine habitat. (eds). A. Teske & V. Carvalho. Springer Oceanography series. Springer Nature Switzerland, chapter 2, pp. 21-42. (doi:10.1007/978-3-030-34827-4_2 )

Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. (2020). Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy. Environ. Microbiol. 22:819-22. (doi:10.1111/1462-2920.14934)

Munoz, R., H. Teeling, R. Amann, R. Rosselló-Móra. (2020). Ancestry and adaptive radiation of Bacteroidetes as assessed by comparative genomics. Syst. Appl. Microbiol. 43:126065. (doi:10.1016/j.syapm.2020.126065)

Murray, A.E., J. Freudenstein, S. Gribaldo, R. Hatzenpichler, P. Hugenholtz, P. Kämpfer, K.T. Konstantinidis, C.E. Lane, R.T. Papke, D.H. Parks, R. Rossello-Mora, M.B. Stott, I.C. Sutcliffe, J.C. Thrash, S.N. Venter, W.B. Whitman, S.G. Acinas, R.I. Amann, K. Anantharaman, J. Armengaud, B.J. Baker, R.A. Barco, H.B. Bode, E.S. Boyd, C.L. Brady, P. Carini, P.S.G. Chain, D.R. Colman, K.M. DeAngelis, D. de Los Rios MA, Estrada-de Los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard, P.R. Girguis, U. Hentschel, J.T. Hollibaugh, L.A. Hug, W.P. Inskeep, E.P. Ivanova, H.P. Klenk, W.J. Li, K.G. Lloyd, F.E. Löffler, T.P. Makhalanyane, D.P. Moser, T. Nunoura, M. Palmer, V. Parro, C. Pedrós-Alió, A.J. Probst, T.H.M. Smits, A.D. Steen, E.T. Steenkamp, A. Spang, F.J. Stewart, J.M. Tiedje, P. Vandamme, M. Wagner, F.P. Wang, P. Yarza, B.P. Hedlund, A.L. Reysenbach. (2020). Roadmap for naming uncultivated Archaea and Bacteria. Nat. Microbiol. 5:987-94. (doi:10.1038/s41564-020-0733-x)

Reintjes, G., B.M. Fuchs, R. Amann, and C. Arnosti. (2020). Extensive Microbial Processing of Polysaccharides in the South Pacific Gyre via Selfish Uptake and Extracellular Hydrolysis. Front. Microbiol. 11:583158. (doi:10.3389/fmicb.2020.583158)

Reintjes, G., B.M. Fuchs, M. Scharfe, K.H. Wiltshire, R. Amann, C. Arnosti. (2020). Short-term changes in polysaccharide utilization mechanisms of marine bacterioplankton during a spring phytoplankton bloom. bioRxiv. (doi:10.1101/2020.01.08.899153)

Schultz, D., D. Zühlke, J. Bernhardt, T.B. Francis, D. Albrecht, C. Hirschfeld, S. Markert, and K. Riedel. (2020). An optimized metaproteomics protocol for a holistic taxonomic and functional characterization of microbial communities from marine particles. Environ. Microbiol. Rep. 12:367-76. (doi:10.1111/1758-2229.12842)

van Erk, M.R., D.V. Meier, T. Ferdelman, J. Harder, I. Bussmann, and D. de Beer. (2020). Kelp deposition changes mineralization pathways and microbial communities in a sandy beach. Limnol. Oceanogr. 65:3066-84. (doi:10.1002/lno.11574)

Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Antón, K.T. Konstantinidis, and R. Rosselló-Móra. (2020). Distinct ecotypes within a natural haloarchaeal population enable adaptation to changing environmental conditions without causing population sweeps. ISME J. Online ahead of print. (doi:10.1038/s41396-020-00842-5)

Wegener, G., K. Knittel, G. Bohrmann, and F. Schubotz. (2020). Benthic deep-sea life associated with asphaltic hydrocarbon emissions in the Southern Gulf of Mexico. In: Marine hydrocarbon seeps. Microbiology and Biogeochemistry of a global marine habitat. (eds). A. Teske & V. Carvalho. Springer Oceanography series. Springer Nature Switzerland, chapter 5, pp. 101-124. (doi:10.1007/978-3-030-34827-4_5)

Wiegand, S., M. Jogler, C. Boedeker, D. Pinto, J. Vollmers, E. Rivas-Marín, T. Kohn, S.H. Peeters, A. Heuer, P. Rast, S. Oberbeckmann, B. Bunk, O. Jeske, A. Meyerdierks, J. E. Storesund, N. Kallscheuer, S. Lücker, O.M. Lage, T. Pohl, B.J. Merkel, P. Hornburger, R.-W. Müller, F. Brümmer, M. Labrenz, A.M. Spormann, H.J.M. Op den Camp, J. Overmann, R. Amann, M.S.M. Jetten, T. Mascher, M.H. Medema, D.P. Devos, A.-K. Kaster, L. Øvreås, M. Rohde, M.Y. Galperin, C. Jogler. (2020). Cultivation and functional characterization of 79 Planctomycetes uncovers their unique biology. Nature Microbiol. 5:126-40. (doi:10.1038/s41564-019-0588-1)