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Publications 2008
Publications 2008
Department of Biogeochemistry
| Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B. B. Jørgensen, A. Larson and J. Peckmann: Lipid biomarker patterns of phosphogenic sediments for upwelling regions. Geomicrobiology Journal 25(2):69-82 (2008). TFO |
| Boudreau, B. P., C. Arnosti, B. B. Jørgensen and D. E. Canfield: Comment on "Physical Model for the Decay and Preservation of Marine Organic Carbon". Science 319:1616b (2008). PubMed Full Text |
| Dale, A. W., D. R. Aguilera, P. Regnier, H. Fossing, N. J. Knab and B. B. Jørgensen: Seasonal dynamics of the depth and rate of anaerobic oxidation of methane in Aarhus Bay (Denmark) sediments. Journal of Marine Research 66:127-155 (2008). IC |
| Dale, A. W., P. Regnier, N. J. Knab, B. B. Jørgensen and P. Van Cappellen: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling. Geochimica et Cosmochimica Acta 72:880–2894 (2008). ScienceDirect |
| Finke, N. and B. B. Jørgensen: Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. The ISME Journal 2: 815-829 (2008). PubMed Full Text |
| Furrer H., Schaltegger U., Ovtcharova M. and P. Meister: U-Pb zircon age of volcaniclastic layers in Middle Triassic platform carbonates of the Austroalpine Silvretta nappe (Switzerland). Swiss J. Geosci. 101:595–603 (2008). Springer Full Text |
| Khalili, A., K. Javadi, A. Saidi, A. Goharzadeh, M. Huettel and B. B. Jørgensen: On generating uniform bottom shear stress. Part I: A quantitative study of microcosm chambers. Recent Patents on Chemical Engineering 1:174-191 (2008). BenthamScience Full Text |
| Knab, N. J., A. W. Dale, K. Lettmann, H. Fossing and B. B. Jørgensen: Thermodynamic and kinetic control on anaerobic oxidation of methane in marine sediments. Geochimica et Cosmochimica Acta 72:3746-3757 (2008). ScienceDirect |
| Knab, N. J., B. A. Cragg, C. Borowski, R. J. Parkes, R. Pancost and B. B. Jørgensen: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): I. Geochemical and microbiological analyses. Geochimica et Cosmochimica Acta 72:2868–2879 (2008). ScienceDirect |
| Knab, N. J., B. A. Cragg, E.R.C. Hornibrook, L. Holmkvist, C. Borowski, R. J. Parkes and B. B. Jørgensen: Regulation of anaerobic methane oxidation in sediments of the Black Sea. Biogeosciences Discuss. 5:2305-2341 (2008). ORCA Full Text |
| Meister, P., Bernasconi, S.M., Vasconcelos, C. and McKenzie, J.A.: Sealevel changes control diagenetic dolomite formation in hemipelagic sediments of the Peru Margin. Marine Geology 252(3-4):166-173 (2008). ScienceDirect |
| Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B. B. Jørgensen and M. M. M. Kuypers: A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861-17866 (2008). PubMed Full Text |
| Nickel, M., V. Vandieken, V. Brüchert and B. B. Jørgensen: Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition. Deep-Sea Research II 55:2390-2398 (2008). USD |
| Neubert N., Nägler T.F. and Böttcher M.E.: Sulfidity controls molybdenum isotope discrimination into euxinic sediments: Evidence from the modern Black Sea. Geology 36:775-778 (2008). Geology |
| Schwermer, C.U., Lavik, G., Abed, R.M.M., Dunsmore, B., Ferdelman, T.G., Stoodley, P., Gieseke, A., de Beer, D.: Sea-level changes control of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Appl.and Environ. Microbiol. 74:2841-285 (2008). |
| Wild, C., Mayr, C., Wehrmann, L., Schöttner, S.I., Naumann, M., Hoffmann, F. and Rapp, H.T.: Organic matter release by cold water corals and its implication for fauna–microbe interaction. Marine Ecology Progress Series 372:67-75 (2008). MEPS |
| Landwehrkamp, Lukas: Determination of in situ methane concentrations in marine sediments by analysis of void gas with gas chromatography. University of Essen (2008). |
| Voßmeyer, Antje: Effects of Pressure on Deep Sea Anaerobic Biogeochemical Processes. (2008). |
| Julies, Elsabé M.: Microbial ecology of anaerobic carbon mineralization in Namibian shelf sediments. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 183pp. |
| Schläppy, Marie-Lise:Chemical micro-environments, ventilation behavior and microbial processes in sponges. Dissertation Universität Bremen, Bremen (2008), 155pp. |
Microsensor Group
| Abed, R. M. M., Kohls K., Schoon R., Scherf A. K., Schacht M., Palinska K. A., Al-Hassani H., Hamza W., Rullkotter J., Golubic S.: Lipid biomarkers, pigments and cyanobacterial diversity of microbial mats across intertidal flats of the arid coast of the Arabian Gulf (Abu Dhabi, UAE). FEMS Microbiology Ecology 65(3):449-462 (2008). PubMed |
| Bachar, A., Polerecky L., Fisher J., Vamvakopoulos K., de Beer D., Jonkers H.M.: Two-dimensional mapping of photopigment distribution and activity of Chloroflexus-like bacteria in a hypersaline microbial mat. FEMS Microb. Ecol. 65:434-448 (2008). PubMed |
| Beutler, M., Makrogianneli K., Vermeij R.J., Keppler M., Ng T., Jovin T.M. and Heintzmann R.: satFRET: estimation of Förster resonance energy transfer by acceptor saturation. Eur. Biophys. J. 38(1):69-82 (2008). PubMed Full Text |
| Bissett, A., de Beer D., Schoon R., Shiraishi F., Reimer A., Arp G.: Microbial mediation of stromatolite formation in karst-water creeks. Limnol. Oceanogr. 53(3):1159-1168 (2008). ASLO Full Text |
| Bissett, A., Reimer A., de Beer D., Shiraish, F., Arp G.: Metabolic microenvironmental control by photosynthetic biofilms under changing macroenvironmental temperature and pH conditions. Appl. Environm. Microbiol. 74(20):6306-6312 (2008). PubMed Full Text |
| Bissett, A., Bowman, J.P., Burke, C.M.: Flavobacterial response to organic pollution. Aquatic Microbial Ecology 51(1):31-43 (2008). PubMed Full Text |
| de Beer, D., Bissett A., de Wit R., Jonkers H., Köhler-Rink S., Nam H., Kim B.H., Eickert G., and Grinstain M.: A microsensor for carbonate ions suitable for microprofiling in freshwater and saline environments. Limnol Oceanogr Methods 6:532-541 (2008). ASLO Full Text |
| De Deckker, P., Abed R. M. M., de Beer D., Hinrichs K.-U., O'Loingsigh T., Schefuß E., Stuu, J. W., Tapper N.J., van der Kaars S.: Geochemical and microbiological fingerprinting of airborne dust that fell in Canberra, Australia, in October 2002. Geochem. Geophys. Geosyst. 9(12):doi:10.1029/2008GC002091, 1-22 (2008). Wiley Full Text |
| Foesel, B. U., Gieseke A., Schwermer C., Stief P., Koch L., Cytryn E., de la Torré J. R., van Rijn J., Minz D., Drake H. L., Schramm A.: Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiology Ecology 63(2):192-204 (2008). PubMed |
| Grossart, H.-P., Jezbera J., K. Hornák, K.M.L. Hutalle, U. Buck and K Šimek: Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environmental Microbiology 10(3):635-652 (2008). PubMed |
| Hoffmann, F., Røy H., Bayer K., Hentschel U., Pfannkuchen M., Brümmer F., de Beer D.: Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba. Mar. Biol. 153:1257-1264 (2008). PubMed Full Text |
| Hoffmann F., Schläppy M.-L.: Sponges (Porifera) and sponge microbes. In: Encyclopedia of Geobiology, Heidelberg, Springer Verlag (2008). |
| Humphrey, C., Weber M., Lott C., Cooper T., Fabricius K.: Effects of suspended sediments, dissolved inorganic nutrients and salinity on fertilisation and embryo development in the coral Acropora millepora (Ehrenberg, 1834). Coral Reefs 27(4):837-850 (2008). Springer Full Text |
| Jansen, S., Walpersdorf E., Werner U., Billerbeck M., Boettcher M., de Beer D.: Functioning of tidal flats as inferred from temporal and spatial dynamics of O2, H2S an pH in their surface sediments. Ocean Dynamics, doi 10.1007/s10236-009-0179-4 (2008). Springer Full Text |
| Kühl, M., Polerecky L.: Functional and structural imaging of phototrophic microbial communities and symbioses. Aquatic Microbial Ecology 53:99-118 (2008). PubMed Full Text |
| Martínez-García, M., Stief P., Díaz-Valdés M., Wanner G., Ramos-Esplá A., Dubilier N., Antón J.: Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environmental Microbiology 10(11):2991-3001 (2008). PubMed Full Text |
| Ploug, H., Iversen M.H., Koski M., Buitenhuis E.T.: Production, oxygen respiration rates, and sinking velocity of copepod fecal pellets: direct measurements of ballasting by opal and calcite. Limnol. Oceanogr. 53(2):469-476 (2008). ASLO Full Text |
| Ploug, H.: Cyanobacterial surface blooms formed by Aphanizomenon sp. and Nodularia spumigena in the Baltic Sea: Small-scale fluxes, pH, and oxygen microenvironments. Limnol Oceanogr. 53:914-921 (2008). ASLO Full Text |
| Polerecky, L., Lott C., Weber M.: In situ measurement of gross photosynthesis using a microsensor-based light-shade shift method. Limnology and Oceanography-Methods 6:373-383 (2008). Full Text |
| Polerecky, L., Bissett A., Al-Najjar M., Faerber P., Osmers H., Suci P. A., Stoodley P., de Beer D.: Modular spectral imaging system for discrimination of pigments in cells and microbial communities. Appl. Environm. Microbiol. 75(3):758-771 (2008). PubMed Full Text |
| Schreiber, F., Polerecky L., de Beer D.: Nitric oxide microsensor for high spatial resolution measurements in biofilms and sediments. Anal. Chem. 80(4):1152-1158 (2008). PubMed |
| Schwermer, C.U., Lavik G., Abed R. M. M., Dunsmore B., Ferdelman T.G., Stoodley P., Gieseke A., de Beer D.: Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Appl. Environm. Microbiol. 74(9):2841-2851 (2008). PubMed Full Text |
| Sher, Y., Schneider K., Schwermer C.U., van Rijn J.: Sulfide-induced nitrate reduction in the sludge of an anaerobic digester of a zero-discharge recirculating mariculture system. Wat. Res. 42(16):4386-4392 (2008). PubMed |
| Shiraishi, F., A. Bissett, D. de Beer, A. Reimer and G. Arp: Photosynthesis, respiration and exopolymer Calcium-binding in biofilm calcification (Westerhöfer and Deinschwanger Creek, Germany). Geomicrobiology Journal 25:83-94 (2008). TFO |
| Shiraishi, F., Reimer A., Bisset A., de Beer D., and Arp G.: Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany). Palaeogeography, Palaeoclimatology and Palaeoecology 262(1-2):91-106 (2008). ScienceDirect |
| Stoodley, P., Wefel, J., Gieseke A., de Beer D., von Ohle C.: Biofilm Plaque and Hydrodynamic Effects on Mass Transfer, Fluoride Delivery and Caries. JADA 139(9):1182-1190 (2008). PubMed |
| Werner, U., Blazejak A., Bird P., Eickert G., Schoon R., Abed R. M. M., Bissett A., de Beer D.: Microbial photosynthesis in coral reef sediments (Heron Reef, Australia). Estuarine, Coastal and Shelf Science 76(4):876-888 (2008). ScienceDirect |
| Ehrenberg, Julia: Einfluss von Stickstoffmonoxid auf den Stickstoffkreislauf in Süßwassersedimenten. Diplomarbeit FH Wiesbaden, Umweltechnik (2008). |
| Kopiniok, Celina: Denitrification Induced Calcification in Saline Biofilms. (2008). |
| Nemeki, Stella: Comparative Study of Benthic Respiration in Silicate and Carbonate Sands of the Islands Elba and Pianosa (Tyrrhenian Sea, Italy). (2008). |
| Sivelgen, Duygu: Comparative Study of Benthic Primary Production in Silicate and Carbonate Sands of the Islands Elba and Pianosa (Tyrrhenian Sea, Italy). (2008). |
Microbial Habitat Group
| Allers, E., C. Niesner, C. Wild and J. Pernthaler: Microbes enriched in seawater after addition of coral mucus. Appl. Environ. Microbiol. 74(10):3274-3278 (2008). PubMed Full Text |
| Amaral-Zettler, L., J. Peplies, A. Ramette, B. Fuchs, W. Ludwig and F. O. Glöckner: Proceedings of the international workshop on Ribosomal RNA technology, April 7–9, 2008, Bremen, Germany. Syst. Appl. Microbiol. 31:258-268 (2008). PubMed |
| Bachar, A., L. Polerecky, J.P. Fischer, K. Vamvakopoulos, D. de Beer and H. Jonker: Two-dimensional mapping of photopigments distribution and activity of Chloroflexus-like bacteria in a hypersaline microbial mat. FEMS Microbiology Ecology 65:434-448 (2008). PubMed |
| Bayer K., A. Siegl, S. Schmitt, F. Hoffmann and U. Hentschel: Unravelling microbial diversity and metabolism in marine sponges. Nova Acta Leopoldina 96:71-78 (2008). |
| Böer, S. I., C. Arnosti, J. E. E. van Beusekom and A. Boetius: Temporal variations in microbial activities and carbon turnover in subtidal sandy sediments. Biogeosciences Discussions 5:4271-4313 (2008). Biogeosciences Full Text |
| Boetius, A., T. Holler, K. Knittel, J. Felden and F.Wenzhöfer: The seabed as natural laboratory: Lessons from uncultivated methanotrophs. pp. 59-82, In: Uncultivated Microorganisms. Microbiology Monographs, S. Epstein (ed.), Springer Verlag (2008). Springer |
| Dupré, S., G. Buffet, J. Mascle, J.-P. Foucher, S. Gauger, A. Boetius, C. Marfia, the AsterX Team, the Quest ROV Teamandthe BIONIL Scientific Party: High-resolution mapping of large gas emitting mud volcanoes on the Egyptian continental margin (Nile Deep Sea Fan) by AUV surveys. Marine Geophysical Researches 29:275-290 (2008). Springer Full Text |
| Elvert, M. and H. Niemann: Occurrence of unusual steroids and hopanoids derived from aerobic methanotrophs at an active marine mud volcano. Org. Geochem. 39:167-177 (2008). ScienceDirect |
| Engelen, B., K. Ziegelmüller, L. Wolf, B. Köpke, A. Gittel, H. Cypionka, T. Treude, S. Nakagawa, F. Inagaki, M. A. Lever and B. O. Steinsbu: Fluids from the oceanic crust support microbial activities within the deep biosphere. Geomicrobiol. J. 25:56-66 (2008). TFO |
| Evrard, V., P. L. M. Cook, B. Veuger, M. Huettel, and J. J. Middelburg: Tracing carbon and nitrogen incorporation and pathways in the microbial community of a photic subtidal sand. Aquat. Microb. Ecol. 53:257-269 (2008). AME |
| Hoffmann, F., H. Røy, K. Bayer, U. Hentschel, M. Pfannkuchen, F. Brümmer, and D. de Beer: Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba. Mar. Biol. 153:1257-1264 (2008). PubMed Full Text |
| Jacobs, J. L., A. C. Fasi, A. Ramette, J. J. Smith, R. Hammerschmidt and G. W. Sundin: Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil. Appl. Environ. Microbiol. 74(10):3121-3129 (2008). PubMed Full Text |
| Kamp, A., H. Røy, and H. N. Schulz-Vogt: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microb. Ecol. 56:484-491 (2008). PubMed Full Text |
| Kanzog, C., A. Ramette, N. V. Quéric, and M. Klages: Response of benthic microbial communities to chitin enrichment: an in situ study in the deep Arctic Ocean. Polar Biol. 32:105-112 (2008). Springer Full Text |
| Lösekann, T., A. Robador, H. Niemann, K. Knittel, A. Boetius, and N. Dubilier: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10(12):3237-3254 (2008). PubMed |
| Niemann H. and M. Elvert: Diagnostic lipid biomarker and stable carbon isotope signatures of microbial communities mediating the anaerobic oxidation of methane with sulphate. Org. Geochem. 39:1668-1677 (2008). ScienceDirect |
| Omoregie, E. O., V. Mastalerz, G. de Lange, K. L. Straub, A. Kappler, H. Røy, A. Stadnitskaia, J.-P. Foucher and A. Boetius: Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren Mud Volcano (Nile Deep Sea Fan, Eastern Mediterranean) Appl. Environ. Microbiol. 74(10):3198-3215 (2008). PubMed Full Text |
| Rossel, P. E., J. S. Lipp, H. F. Fredricks, J. A. Arnds, A. Boetius, M. Elvert and K.-U. Hinrichs: Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria. Org. Geochem. 39:992-999 (2008). ScienceDirect |
| Røy H., J. S. Lee, S. Jansen and D. de Beer: Tide-driven deep porewater flow in intertidal sand flats. Limnol. Oceanogr. 53(4):1521-1530 (2008). TNO Full Text |
| Sweetman, A. K. and U. Witte: Response of an abyssal macrofaunal community to a phytodetrital pulse. Mar. Ecol. Prog. Ser. 355:73-84 (2008). MEPS |
| Sweetman, A. K. and U. Witte: Macrofaunal response to phytodetritus in a bathyal Norwegian fjord. Deep-Sea Res. I 55:1503-1514 (2008). ScienceDirect |
| Wegener, G., H. Niemann, M. Elvert, K.-U. Hinrichs and A. Boetius: Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane. Environ. Microbiol. 10(9):2287-2298 (2008). PubMed |
| Wegener, G., M. Shovitri, K. Knittel, H. Niemann, M. Hovland, and A. Boetius: Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea). Biogeosciences. 5:1127–1144 (2008). EBSCO Full Text |
| Wild, C., C. Mayr, L. M. Wehrmann, S. Schöttner, M. Naumann, F. Hoffmann and H. T. Rapp: Organic matter release by cold water corals and its implication for fauna-microbe interaction. Mar. Ecol. Prog. Ser. 372:67-75 (2008). MEPS |
| Girnth, Anne-Christin: Diversity of sulfide-oxidizing bacteria at Amon Mud Volcano. Leibniz Universität Hannover (2008), 130pp. |
| Pfitzner, Barbara: Vergleichende Untersuchungen der bakteriellen Gemeinschaft in Riffsanden verschiedener Mineralstruktur. LMU München (2008). |
| Ufkes, Judith: Impact of increased carbon dioxide concentration on the structure of microbial communities in marine sediments. Diplomarbeit Universität Bremen, Bremen (2008), 108pp. |
| Böer, Simone: Investigation of the distribution and activity of benthic microorganisms in coastal habitats. Dissertation Universität Bremen, Bremen (2008), 217pp. |
| Wegener, Gunter: Methane Oxidation and Carbon Assimilation in Marine Sediments. Dissertation Universität Bremen, Bremen (2008), 153pp. |
Mathematical Modeling Group
| Alam, M. and Khalili A.: Instabilities and patterns in horizontally oscillating particulate suspension. Physical Review E, doi: 10.1103/PhysRevE.77041305 (2008). PubMed |
| Khalili, A.: Mathematical modeling of dynamic processes in marine systems. Research Report of Max Planck Society (2008). |
| Khalili, A., Javadi K., Said A., Goharzadeh A., Huettel M. and Jørgensen B.B.: On Generating Uniform Bottom Shear Stress, Part I: A Quantitative Study of Microcosm Chambers. Recent Patents on Chemical Engineering 1(3):174-191 (2008). BenthamScience Full Text |
| Liu, B. and Khalili A.: Acceleration of steady-state lattice Boltzmann simulations for exterior flows. Physical Review E, doi: 10.1103/PhysRevE.78.056701 (2008). PubMed |
| Matyka, M., Khalili A. and Koza Z.: Tortuosity-porosity relation in porous media flow. Physical Review E, doi: 10.1103/PhysRevE.78.026306 (2008). PubMed |
| Morad, M.R. and Khalili A.: Transition layer thickness in a fluid-porous medium of multi-sized spherical beads. Experiments in Fluids 46(2):323-330 (2008). Springer Full Text |
Department of Microbiology
| Amann, R., W. Goebel, B. Reinhold-Hurek, B. Schink, and F. Widdel (eds.): Life strategies of microorganisms in the environment and in host organisms. Nova Acta Leopoldina NF 96: 356 (2008). Leopoldia |
| Faivre, D., N. Menguy, M. Pósfai and D. Schüler: Environmental parameters affect the physical properties of fast-growing magnetosomes. American Mineralogist 93:463-469 (2008). HAL |
| Grundmann, O., Behrends A., Rabus R., Amann J., Halder T., Heider J., Widdel, F.: Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1. Environ. Microbiol. 10(2):376-385 (2008). PubMed |
| Hünken, M., Harder J., Kirst G.O.: Epiphytic bacteria on the Antarctic ice diatom Amphiprora kufferathii Manguin cleave hydrogen peroxide produced during algal photosynthesis. Plant Biol. 10:519-526 (2008). PubMed |
| Kamp, A., Røy H., Schulz-Vogt H.N.: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microb. Ecol. 56:484-491 (2008). PubMed Full Text |
| Krüger, M., H. Wolters, M. Gehre, S.B. Joye and H.-H. Richnow: Tracing the slow growth of anaerobic methane-oxidizing communities by 15N-labelling techniques. FEMS Microbiol. Ecol. 63:401-411 (2008). PubMed |
| Kühn, S.F. and Köhler-Rink S.: pH effect on the susceptibility to parasitoid infection in the marine diatom Coscinodiscus spp. (Bacillariophyceae). Mar. Biol. 154:109-116 (2008). PubMed Full Text |
| Liebner, S., J. Harder and D. Wagner: Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. International Microbiology 11:195–202 (2008). PubMed Full Text |
| Mayr, S., C. Latkoczy, M. Krüger, D. Günther, S. Shima, R.K. Thauer, F. Widdel and B. Jaun: Structure of an F430 variant from Archaea associated with anaerobic oxidation of methane. J. Am. Chem. Soc. 130:10758–10767 (2008). PubMed |
| Musat, F., Galushko A., Jacob J., Widde, F., Kube M., Reinhardt R., Wilkes H., Schink B., Rabus R.: Anaerobic degradation of naphthalene and 2′methylnaphthalene by strains of marine sulfate-reducing bacteria. Environ. Microbiol. 11(1):209-219(2008). PubMed |
| Musat, F., Widdel F.: Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridization of the dominant phylotype. Environ. Microbiol. 10(1):10-19 (2008). PubMed |
| Scheffel, A., Gärdes A., GrünbergK ., Wanner G. and D. Schüler: The major magnetosome proteins MamGFDC are not essential for magnetite biomineralization in Magnetospirillum gryphiswaldense but regulate the size of magnetosome crystals. Journal of Bacteriology 190(1):377-386 (2008). PubMed Full Text |
| Trautwein, K., Kühner S., Wöhlbrand L., Halder T., Kuchta K., Steinbüchel A., Rabus R.: Solvent stress response of the denitrifying bacterium "Aromatoleum aromaticum" strain EbN1. Appl. Environ. Microbiol. 74(8):2267-2274 (2008). PubMed Full Text |
| Widdel, F.: Erneuerbare Energieträger aus Mikroorganismen – Möglichkeiten und Grenzen. pp.138-169, Anmerkungen pp.319-323, In: Die Zukunft der Energie. Gruss, P., Schüth, F. (Hrsg.), C.H. Beck, München (2008). |
| Wöhlbrand, L., Rabus R.: Development of a Genetic System for the Denitrifying Bacterium 'Aromatoleum aromaticum' Strain EbN1. J. Mol. Microbiol. Biotechnol. doi: 10.1159/000159194 (2008). PubMed |
| Wöhlbrand, L., Wilkes H., Halder T., Rabus R.: Anaerobic degradation of p-Ethylphenol by "Aromatoleum aromaticum" strain EbN1: pathway, regulation, and involved proteins. J. Bacteriol. 190(16):5699-5709 (2008). PubMed Full Text |
| Appel, Ansgar: Characterization of a new, glucose-fermenting marine Gammaproteobacterium. Master thesis, University of Osnabrück (2008). |
| Czisch, Maik: Characterization of marine bacteria from the pelagial of the North Atlantic (in German). Diploma thesis, University of Bremen (2008). |
| Dikfidan, Aytac: Establishment of a genetic system for Castellaniella defragrans Strain 65Phen (in German). Diploma thesis, Universität Bremen (2008). |
| Enning, Dennis: Anaerobic corrosion of iron by cultures of sulphate-reducing bacteria. Master thesis, MarMic, Universität Bremen, Bremen (2008). |
| Gottschall, Matthias: Optimization of the protein purification protocol for the isolation of linalool-dehydratase from the denitrifying bacterium Castellaniella defragrans strain 65Phen (in German). Diploma thesis, University of Applied Sciences, Jena (2008). |
| Holkenbrink, Carina: Taxonomische Charakterisierung von neuen Spezies des Genus Rhodopirellula. Bachelor thesis Universität Bremen, Bremen (2008). |
| Jaekel, Ulrike: Anaerobic oxidation of short-chain and cyclic alkanes by sulphate-reducing and denitrifying bacteria. Master thesis, MarMic, Universität Bremen, Bremen (2008). |
| Sommer, Daniel: Approaches to clone and over express two genes from the anaerobic monoterpene degradation pathway of Castellaniella defragrans 65Phen. Bachelor thesis, University of Applied Sciences, Bonn-Rhein-Sieg (2008). |
| Troppens, Danielle: Physiological characterization of newly isolated planctomycetes resembling Rhodopirellula baltica (in German). University of Applied Sciences, Berlin (2008). |
| Uffkes, Judith: Impact of increased carbon dioxide concentration on the structure of microbial communities in marine sediments. Diploma thesis, University of Bremen (2008). |
| Webner, Kirsten: Genexpression des anaeroben Alkanabbaus in dem denitrifizierenden Betaproteobakterium OcN1. Masterarbeit Universität Bremen, Bremen (2008). |
| Wiese, Maria: The fitness and formation of biofilm derived variants of Serratia marcescens. Diplomarbeit Universität Bremen, Bremen (2008). |
| Zaleska, Zane: Detection of nmsA transcripts in naphthalene- vs. 2-methylnaphthalene-grown cells of the sulphate-reducing strains NaphS2, NaphS3 and NaphS6. Master thesis, MarMic, Universität Bremen, Bremen (2008). |
| Hoa, Tran Nhu: New organic substrates for phototrophic bacteria. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 104pp. |
| Junge, Katja: Die Funktion der CDF-Transporter MamB und MamM beim magnetosomalen Eisentransport in Magnetospirillum gryphiswaldense. Dissertation Universität Bremen, Bremen (2008), 153pp. |
| Shovitri, Maya: Bacterial community in the intertidal sediments populated by Arenicola marina, a terminal restriction fragment length polymorphism study. Dissertation Universität Bremen, Bremen (2008), 135pp. |
| Wöhlbrand, Lars: Proteomische und genetische Untersuchungen zum Aromaten-Abbau in "Aromatoleum aromaticum" Stamm EbN1. Dissertation Universität Bremen, Bremen (2008), 213pp. |
Diversity Group
| Liebner, S., Harder, J. and Wagner, D.: Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. International Microbiology 11:195-202 (2008). PubMed Full Text |
| Hünken, M., Harder, J. and Kirst, G.O.: Epiphytic bacteria on antarctic ice diatom Amphiprora kufferathii Manguin cleave hydrogen peroxide produced during algal photosynthesis. Plant Biology 10:519-526 (2008). PubMed |
| Appel, Ansgar: Charakterisierung eines neuartigen, auf Glucose gärenden, marinen Gammaproteobakteriums. Masterarbeit Biologie Universität Osnabrück, Osnabrück (2008), 66pp. |
| Czisch, Maik: Charakterisierung von marinen Bakterien aus dem Pelagial des Nordatlantiks. Diplomarbeit Biologie Universität Bremen, Bremen (2008), 110pp. |
| Dikfidan, Aytac: Etablierung eines genetischen Systems in Castellaniella defragrans Stamm 65Phen. Diplomarbeit Biologie Universität Bremen, Bremen (2008), 107pp. |
| Gottschall, Matthias: Optimierung des Proteinaufreinigungsprotokolls zur spezifischen Isolierung der Linalool-Dehydratase aus dem nitratreduzierenden Bakterium Castellaniella defragrans Stamm 65Phen. Diplomarbeit (Dipl.-Ing. (FH) Pharma-Biotechnologe) FH Jena, Jena (2008), 70pp. |
| Holkenbrink, Carina: Taxonomische Charakterisierung von neuen Spezies des Genus Rhodopirellula. Bachelorarbeit Biologie Universität Bremen, Bremen (2008), 52pp. |
| Sommer, Daniel: Approaches to clone and overexpress two genes from the anaerobic monoterpene degradation pathway of Castellaniella defragrans 65Phen. Bachelorarbeit, Fachhochschule Bonn-Rhein-Sieg (2008), 81pp. |
| Troppens, Danielle: Physiologische Untersuchungen zur Charakterisierung von Rhodopirellula baltica ähnlichen Planctomycetes-Neuisolaten. Diplomarbeit (Dipl.-Ing. (FH) Biotechnologie) Technische Fachhochschule Berlin, Berlin (2008), 71pp. |
Ecophysiology Group
| Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B.B. Jørgensen, A. Larson, J. Peckmann: Lipid biomarker patterns of phosphogenic sediments from upwelling regions. Geomicrobiology Journal 25:69-82 (2008). TFO |
| Kamp, A., Røy H. and Schulz-Vogt H. N.: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microbial Ecology 56:484-491 (2008). PubMed Full Text |
Department of Molecular Ecology
| Amann, R. and B. Fuchs: Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Rev. Microbiol. 6:339-348 (2008). PubMed |
| Allers, E., C. Niesner C. Wild and J. Pernthaler: Microbes enriched in seawater after addition of coral mucus. Appl. Environ. Microbiol. 74(10):3274-3278 (2008). PubMed Full Text |
| Barberyon, T., F. Carpentier, S. L′Haridon, M. Schüler, G. Michel and R. Amann: Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter. Int. J. System. Evol. Microbiol. 58:790-797 (2008). PubMed Full Text |
| Boetius, A., T. Holler, K. Knittel, J. Felden and F.Wenzhöfer: The seabed as natural laboratory: Lessons from uncultivated methanotrophs. pp. 59-82, In: Uncultivated Microorganisms. Microbiology Monographs, S. Epstein (ed.), Springer Verlag (2008). Springer |
| Gittel, A., M. Mußmann, H. Sass, H. Cypionka, and M. Konneke: Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis. Environ. Microbiol. 10(10): 2645-2658 (2008). PubMed |
| Hieu, C. X., B. Voigt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker and T. Schweder: Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T . Proteomics 8:1608-1623 (2008). PubMed |
| Lösekann, T., A. Robador, H. Niemann, K. Knittel, A. Boetius, and N. Dubilier: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10:3237-3254 (2008). PubMed |
| Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillon, F. Horreard, R. Amann, B.B. Jørgensen and M.M.M. Kuypers: A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861-17866 (2008). PubMed Full Text |
| Payne, M.S., L. Høj, M. Wietz, M.R. Hall, L. Sly and D.G. Bourne: Microbial diversity of mid-stage Palinurid phyllosoma from Great Barrier Reef waters. Journal of Applied Microbiology 105:340-350 (2008). PubMed |
| Rossel, P.E., J.S. Lipp, H.F.Fredricks, J. Arnds, A. Boetius, M. Elvert, and K.-U. Hinrichs: Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria. Org. Geochem. 39:992-999 (2008). ScienceDirect |
| Wegener, G., M. Shovitri, K. Knittel, H. Niemann, M. Hovland, and A. Boetius: Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea). Biogeosciences 5:1127-1144 (2008). EBSCO |
| Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs and R. Amann: A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ. Microbiol. 10(11):3106-3119 (2008). PubMed |
| Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K.-H. Schleifer, W. Ludwig, F. O. Glöckner, R. Rosselló-Mora: The all-species living tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. System. Appl. Microbiol. 31:241-250 (2008). PubMed |
| Zubkov, M.V., G.A. Tarran, I. Mary and B.M. Fuchs: Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean. Journal of Plankton Research 30(2):211-220 (2008). JPR Full Text |
| Liebner, Susanne: Adaption, Spatial Variability, and Phylogenetic Characterization of Methanotrophic Communities in Permafrost Soils of the Lena Delta, Siberia. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 119pp. |
| Richter, Michael: Computational Processing and Biological Interpretation of Genomes and Metagenomes of Marine Bacteria. Dissertation Jacobs Universität Bremen, Bremen (2008), 162pp. |
Symbiosis Group
| Dubilier, N., Bergin C., Lott C.: Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nature Reviews Microbiology 6:725-740 (2008). PubMed |
| Lösekann, T., Robador A., Niemann H., Knittel K., Boetius A., Dubilier N.: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10:3237-3254 (2008). PubMed |
| Ruehland, C., Blazejak A., Lott C., Loy A., Erséus C., Dubilier N.: Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. Environ. Microbiol. 10(2):3404-3416 (2008). PubMed |
| Martínez-García, M., Stief P., Díaz-Valdés M., Wanner G., Ramos-Esplá A., Dubilier N., and Antón J.: Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environ. Microbiol. 10(11):2991-3001 (2008). PubMed |
| Fink, Dennis: Distribution, abundance and productivity of endosymbionts in the deep-sea mussel Bathymodiolus. Master thesis/ PhD Thesis proposal, MarMic, University of Bremen, Bremen (2008), 55pp. |
| Röse, Karina: Symbiosis between bacteria and bathymodioline mussels at hydrothermal vent and cold seep sites. Master thesis/ PhD Thesis proposal, MarMic, University of Bremen, Bremen (2008), 76pp. |
| Zielinski, Frank: Geobiological coupling of hydrothermal vent fluids with endosymbiotic primary producers of Bathymodiolus mussels from hydrothermal vents on the Mid-Atlantic Ridge. Dissertation, MarMic, University of Bremen, Bremen (2008), 159pp. |
Microbial Genomics Group
| Amaral-Zettler, L., J. Peplies, A. Ramette, B. Fuchs, W. Ludwig and F. O. Glöckner: Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany. Syst. Appl. Microbiol. 31:258-268 (2008). PubMed |
| Bohnebeck, U., T. Lombardot, R. Kottmann and F. O. Glöckner: MetaMine - A tool to detect and analyse gene patterns in their environmental context. BMC Bioinformatics 9:459, 10pp. (2008). PubMed Full Text |
| Field, D., Garrity, G., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Ashburner, M., Boore, J.L., Cochrane, G., Cole, J., de Pamphilus, C., Edwards, R., Faruque, N., Feldman, R., Gray, T., Gurr, S., Haft, D., Hancock, D., Hertz-Fowler, C., Hughes, J., Joint, I., Kane, M., Kennedy, J., Kolker, E., Kyripides, N., Leebens-Mack, J., Lewis, S., Maltsev, N., Markowitz, V., Methe, B., Morrison, N., Nelson, K., Parkhill, J., Sansone, S., Spiers, A., Stevens, R., Swift, P., Taylor, C., Tateno, Y., Tett, T., Turner, S., Ussery, D., Vaughan, B., Whetzel, T., Wilson, G., Wipat, A.: Towards a richer description of our complete collection of genomes and metagenomes: the "Minimum Information about a Genome Sequence" (MIGS) specification. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. LBNL Paper LBNL-60477, Nat. Biotechnol. 26(5): 541-547 (2008). IIDI Full Text |
| Field, D., F. Oliver Glöckner, G.M. Garrity, T. Gray, P. Sterk, G.Cochrane, R. Vaughan, E. Kolker, R. Kottmann, N. Kyrpides, S. Angiuoli, P. Dawyndt, R.Guralnick, P. Goldstein, N. Hall, L. Hirschman, S. Kravitz, A. L. Lister, V. Markowitz, N. Thomson and T. Whetzel: Meeting report: The fourth Genomic Standards Consortium (GSC) workshop. Omics 12(2):101-108 (2008). PubMed Full Text |
| Field, D., G.M. Garrity, S.-A. Sansone, P. Sterk, T. Gray, N. Kyrpides, L. Hirschman, F. Oliver Glöckner, R. Kottmann, S. Angiuoli, O. White, P. Dawyndt, N. Thomson, I.S. Gil, N. Morrison, T. Tatusova, I. Mizrachi, R. Vaughan, G. Cochrane, L. Kagan, S. Murphy, L. Schriml and the Genomic Standards Consortium: Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. Omics 12(2):109-113 (2008). PubMed Full Text |
| Morrison N. , F.O.Glöckner, R. Kottmann, G. Cochrane, R. Vaughan, G. Garrity, J. Cole, L. Hirschman, L. Schriml, I. Mizrachi, S. Federhen, D. Schindel, S. Miller, P.Hebert, S. Ratnasingham, R. Hanner, L. Amaral-Zettler, M. Sogin, M. Ashburner, S. Lewis, B. Smith, Genomic Standards Consortium (GSC), International Nucleotide Sequence Database Collaboration (INSDC), Consortium for the Barcode of Life (CBOL), International Census of Marine Microbes (ICoMM) and the Environment Ontology Consortium (EnvO): Working together to put molecules on the map. Nature 453:978 (2008). Full Text |
| Field, D., Morrison N. , F.O. Glöckner, R. Kottmann, G. Cochrane, R. Vaughan, G. Garrity, J. Cole, L. Hirschman, L. Schriml, I. Mizrachi, S. Federhen, D. Schindel, S. Miller, P. Hebert, S. Ratnasingham, R. Hanner, L. Amaral-Zettler, M. Sogin, M. Ashburner, S. Lewis, B. Smith, Genomic Standards Consortium (GSC), International Nucleotide Sequence Database Collaboration (INSDC), Consortium for the Barcode of Life (CBOL), International Census of Marine Microbes (ICoMM) and the Environment Ontology Consortium (EnvO): Working together to put molecules on the map. Nature 453:978 (2008). PubMed |
| Garrity, G.M. , D. Field, N. Kyrpides, L. Hirschman, S.-A. Sansone, S. Angiuoli, J.R. Cole, F.O. Glöckner, E. Kolker, G. Kowalchuk, M.A. Moran, D. Ussery and O.White: Toward a standards-compliant genomic and metagenomic publication record. Omics 12(2):157-160 (2008). PubMed Full Text |
| Hieu, C. X., B. Voigt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker and T. Schweder: Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T . Proteomics 8:1608-1623 (2008). PubMed |
| Hirschman, L., C. Clark, K. B. Cohen, S. Mardis, J. Luciano, R. Kottmann, J. Cole, V. Markowitz, N. Kyrpides, N. Morrison, L. M. Schriml, D. Field and the Novo Project: Habitat-Lite: A GSC case study based on free text terms for environmental metadata. Omics-a Journal of Integrative Biology 12:129-136 (2008). PubMed Full Text |
| Kottmann, R., T. Gray, S. Murphy, L. Kagan, S. Kravitz, T. Lombardot, D. Field, F. O. Glöckner and the Genomic Standards Consortium: A standard MIGS/MIMS compliant XML schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML). Omics 12(2):115-121 (2008). PubMed Full Text |
| Peplies, J., R. Kottmann, W. Ludwig and F. O. Glöckner: A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol 31:251-257 (2008). PubMed |
| Richter, M., T. Lombardot, I. Kostadinov, R. Kottmann, M. B. Duhaime, J. Peplies and F. O. Glöckner: JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta) genomes. BMC Bioinformatics 9:177, 9pp. (2008). PubMed Full Text |
| Van Brabant, B., T. Gray, B. Verslyppe, N. Kyrpides, K. Dietrich, F. O. Glöckner, J. Cole, R. Farris, L. M. Schriml, P. De Vos, B. De Baets, D. Field, P. Dawyndt: Laying the foundation for a genomic Rosetta stone: Creating information hubs through the use of consensus identifiers. Omics 12(2):123-127 (2008). PubMed Full Text |
| Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K. H. Schleifer, W. Ludwig, F. O. Glöckner and R. Rosselló-Mora.: The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250 (2008). PubMed |
| Hankeln, Wolfgang: MetaBar – a tool for consistent contextual data acquisition for ecological genomics and metagenomics. MarMic, Master thesis, (2008). |
| í–ztürk, Basak: Metatranscriptomic analysis in the North Sea and the Baltic Sea. MarMic, Master thesis, (2008). |
| Waldmann, Jost: Phyloprint: Entwicklung und Anwendung eines Frameworks zur taxonomischen Klassifikation. Diplomarbeit (2008). |
Nutrient Group
| Duce, R.A., J. LaRoche, K. Altieri, K.R. Arrigo, A.R. Baker, D.G. Capone, S. Cornell, F. Dentener, J. Galloway, R.S. Ganeshram, R.J. Geider, T. Jickells, M.M.M. Kuypers, R. Langlois, P.S. Liss, S.M. Liu, J.J. Middelburg, C.M. Moore, S. Nickovic, A. Oschlies, T. Pedersen, J. Prospero, R. Schlitzer, S. Seitzinger, L.L. Sorensen, M. Uematsu, O. Ulloa, M. Voss, B. Ward, L. Zamora: Impacts of atmospheric anthropogenic nitrogen on the open ocean. Science 320:893-897 (2008). PubMed |
| Forster, A., M.M.M. Kuypers, S.C. Turgeon, H.-J. Brumsack, M.R. Petrizzo, J.S. S. Damsté: The Cenomanian/Turonian oceanic anoxic event in the South Atlantic: New insights from a geochemical study of DSDP Site 530A. Palaeogeography, Palaeoclimatology, Palaeoecology 267:256–283 (2008). ScienceDirect |
| Jensen, M.M., M.M.M. Kuypers, G. Lavik and B. Thamdrup: Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea. Limnology and Oceanography 53(1):23-36 (2008). ASLO Full Text |
| Lam P., J. P. Cowen, Popp, B. N. and Jones, R. D.: Microbial Ammonia Oxidation and Enhanced Nitrogen Cycling in the Endeavour Hydrothermal Plume. Geochimica et Cosmochimica Acta 72(9): 2268-2286 (2008). ScienceDirect |
| Lavik, G., T. Stührmann, V. Brüchert, A. Van der Plas, V. Mohrholz, P. Lam, M. Mußmann, B.M. Fuchs, R. Amann, U. Lass and M.M.M. Kuypers: Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457:581-585 (2008). PubMed |
| Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B.B. Jørgensen and M.M.M. Kuypers: A single cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861–17866 (2008). PubMed Full Text |
| Schmid, M.C., A.B. Hooper, M.G. Klotz, D. Woebken, P. Lam, M.M.M. Kuypers, A. Pommerening-Roeser, H.J.M. op den Camp, M.S.M. Jetten: Environmental detection of the octaheme cyctochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria. Environmental Microbiology 10(11):3140–3149 (2008). PubMed |
| Schwermer, C. U., Lavik G., Abed R. M. M., Dunsmore B., Ferdelman T.G., Stoodley P., Gieseke A., de Beer D.: Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Applied and Environmental Microbiology 74(9):2841-2851 (2008). PubMed Full Text |
| Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs and R. Amann: A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environmental Microbiology 10:3106–3119 (2008). PubMed |