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Pub­lic­a­tions 2016

Pub­lic­a­tions 2016

HGF-MPG joined re­search Group

Bienhold C., Zinger L., Boetius A., Ramette A.: Di­versity and biogeo­graphy of bathyal and abyssal sea­floor bac­teria. PLOS ONE 11(1): e0148016. doi: 10.1371/​journal.pone.0148016. (2016) PubMed
Buttigieg P.L., Pafilis E., Lewis S.E., Schildhauer M.P., Walls R.L., Mungall C.J.: The en­vir­on­ment on­to­logy in 2016: bridging do­mains with in­creased scope, se­mantic dens­ity, and in­ter­op­er­a­tion. Journal of Bio­med­ical Se­mantics 7 (1), 57. http://​dx.doi.org/​10.1186/​s13326-016-0097-6 (2016)PubMed
Danovaro R., Molari M., Corinaldesi C., Dell´Anno A.: Mac­roe­co­lo­gical drivers of Ar­chaea and Bac­teria in benthic deep-sea eco­sys­tems. Sci­ence Ad­vances 2(4). doi: 10.1126/​sciadv.1500961 (2016) Science
Donis D., McGinnis D.F., Holtappels M., Felden J., Wenzhöfer F.: As­sess­ing benthic oxy­gen fluxes in oli­go­trophic deep sea sed­i­ments (HAUS­GARTEN ob­ser­vat­ory). Deep Sea Re­search I. 111: 1-10. doi: 10.1016/​j.dsr.2015.11.007. (2016) ScienceDirect
Dowell F., Cardman Z., Dasarathy S., Kellermann M., Lipp J. S., Ruff S. E., Biddle J. F., McKay L., MacGregor B. J., Lloyd K. G., Albert D. B., Mendlovitz H., Hinrichs K.-U., Teske A.: Mi­cro­bial com­munit­ies in meth­ane- and short chain al­kane-rich hy­dro­thermal sed­i­ments of Guay­mas Basin. Fron­ti­ers in Mi­cro­bi­o­logy 7: 17. http://​dx.doi.org/​10.3389/​fm­icb.2016.00017. (2016) Frontiers
Dyksma S., Bischof K., Fuchs B.M., Hoffmann K., Meier D., Meyerdierks A., Pjevac P., Probandt D., Richter M., Stepanauskas R., Mußmann M.: Ubi­quit­ous Gammapro­teo­bac­teria dom­in­ate dark car­bon fix­a­tion in coastal sed­i­ments. The ISME Journal 10: 1939-1953. doi: 10.1038/​is­mej.2015.257. (2016) PubMed
Fadeev E., De Pascale F., Vezzi A., Hubner S., Aharonovich D., Sher D.: Why Close a Bac­terial Gen­ome? The Plas­mid of Al­teromo­nas macleodii HOT1A3 is a Vec­tor for Inter-Spe­cific Trans­fer of a Flex­ible Ge­n­omic Is­land. Fron­ti­ers in Mi­cro­bi­o­logy. doi:10.3389/​fm­icb.2016.00248 (2016) PubMed
Fernández-Méndez M., Turk-Kubo K. A., Rapp J. Z., Buttigieg P. L., Krumpen T., Zehr J. P., Boetius A.: Diazo­troph di­versity in the sea ice, melt ponds and wa­ter column of the Cent­ral Arc­tic Ocean. Fron­ti­ers in Aquatic Mi­cro­bi­o­logy 7:1884 doi: 10.3389/​fm­icb.2016.01884 (2016) Frontiers
Hanke A., Berg J., Hargesheimer T., Tegetmeyer H.E., Sharp C., Strous M.: Se­lect­ive pres­sure of tem­per­at­ure on com­pet­i­tion and cross-feed­ing within de­ni­tri­fy­ing and fer­ment­at­ive mi­cro­bial com­munit­ies. Fron­ti­ers in Mi­cro­bi­o­logy 6:1461. doi: 10.3389/​fm­icb.2015.01461. (2016) PubMed
Hassenrück C., Fink A., Lichtschlag A., Tegetmeyer H., De Beer D., Ramette A.: Quan­ti­fic­a­tion of the ef­fects of ocean acid­i­fic­a­tion on sed­i­ment mi­cro­bial com­munit­ies in the en­vir­on­ment: the im­port­ance of eco­sys­tem ap­proaches. FEMS Mi­cro­bi­o­logy Eco­logy doi: 10.1093/​fem­sec/​fiw027. (2016) PubMed
ten Hoopen P., Amid C., Buttigieg P. L., Pafilis E., Bravakos P., Cerdeño-Tárraga A. M., Gibson R., Kahlke T., Legaki A., Kada N. M., Papastefanou G., Pereira E., Rossello M., Toribio A. L., Cochrane G.: Value, but high costs in post-de­pos­ition data cur­a­tion. Data­base. doi: 10.1093/​data­base/​bav126. (2016) PubMed
Jessen G. L., Lichtschlag, A., Struck, U., Boetius A.: Dis­tri­bu­tion and com­pos­i­tion of thio­trophic mats in the hyp­oxic zone of the Black Sea (150-170m wa­ter depth, Crimea mar­gin). Fron­ti­ers in Mi­cro­bi­o­logy 7:1011. doi: 10.3389/​fm­icb.2016.01011 (2016) Frontiers
Kellermann M.Y., Yoshinaga M.Y., Wegener G., Krukenberg V., Hinrichs K.-U.: Tra­cing the pro­duc­tion and fate of in­di­vidual ar­chaeal in­tact po­lar lip­ids by stable iso­tope prob­ing, Or­ganic Geo­chem­istry. doi:10.1016/​j.orggeo­chem.2016.02.004. (2016) Re­searchG­ate
Kerou M., Offre P., Valledor L., Abby S., Melcher M., Nagler M., Weckwerth W., Schleper C.: Pro­teo­m­ics and com­par­at­ive ge­n­om­ics of Ni­trososphaera vi­ennen­sis re­veal the core gen­ome and ad­apt­a­tions of ter­restrial ar­chaeal am­mo­nia-ox­id­izers. PNAS doi/​10.1073/​pnas.1601212113 (2016) PNAS
Koureas D., Hardisty A., Vos R., Agosti D., Arvanitidis C., Bogatencov P., Buttigieg P.L., de Jong Y., Horvath F., Gkoutos G., Groom Q., Kliment T., Kõljalg U., Manakos I., Marcer A., Marhold K., Morse D., Mergen P., Penev L., Pettersson L., Svenning J., van de Putte A., Smith V.: Uni­fy­ing European Biod­iversity In­form­at­ics (Bi­oUnify). Re­search Ideas and Out­comes 2: e7787. ht­tps://​doi.org/​10.3897/​rio.2.e7787 (2016) Rio
Krukenberg V., Harding K., Richter M., Glöckner F.-O., Gruber Vodicka H., Adam B., Berg J., Knittel K., Tegetmeyer H.E., Boetius A., Wegener G.: Can­did­atus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­vir­on­mental Mi­cro­bi­o­logy, 18:3073-3091. doi: 10.1111/​1462-2920.13283. (2016) PubMed
Laso-Pérez R., Wegener G., Knittel K., Widdel F., Harding K. J., Krukenberg V., Meier D. V., Richter M., Tegetmeyer H. E., Riedel D., Richnow H.-H., Adrian L., Thorsten R., Lechtenfeld O., Musat F.: Ther­mo­philic ar­chaea ac­tiv­ate bu­tane via al­kyl-CoM form­a­tion. Nature. doi:10.1038/​nature20152 (2016) PubMed
Leduc D., Rowden A., Glud R.N., Wenzhöfer F., Kitazato H., Clark M.: Com­par­ison between in­faunal com­munit­ies of the deep floor and edge of the Tonga Trench: pos­sible ef­fects of dif­fer­ences in or­ganic mat­ter sup­ply. Deep Sea Re­search I 116: 264-275. doi: 10.1016/​j.dsr.2015.11.003. (2016) ScienceDirect
Pafilis E., Buttigieg P. L., Ferrel B.l, Pereira E., Schnetzer J., Arvanitidis C., Jensen L. J.: EX­TRACT: In­ter­act­ive ex­trac­tion of en­vir­on­ment metadata and term sug­ges­tion for meta­ge­n­omic sample an­nota­tion. Data­base. doi: 10.1093/​data­base/​baw005. (2016) PubMed
Purser A., Marcon Y., Hoving H.J., Vecchione M., Piatkowski U., Eason D., Bluhm H., Boetius A.: As­so­ci­ation of deep-sea in­cir­rate oc­to­pods with man­ganese-crusts and nod­ule fields in the Pa­cific Ocean. Cur­rent Bio­logy Vol. 26, Is­sue 24, R1268–R1269 http://​dx.doi.org/​10.1016/​j.cub.2016.10.052 (2016) CurrentBiology
Roca‐Martí, M., Puigcorbé,V., Rutgers van der Loeff, M.M., Katlein, C., Fernández‐Méndez, M., Peeken, I., Masqué, P.: Car­bon ex­port fluxes and ex­port ef­fi­ciency in the cent­ral Arc­tic dur­ing the re­cord sea‐ice min­imum in 2012: a joint 234Th/​238U and 210Po/​210Pb study. Journal of Geo­phys­ical Re­search: Oceans. 121:7 5030-5049 (2016) Wiley
Rossel P.E., Bienhold C., Boetius A., Dittmar T.: Dis­solved or­ganic mat­ter in pore wa­ter of Arc­tic Ocean sed­i­ments: in­flu­ence of the en­vir­on­ment on the mo­lecu­lar com­pos­i­tion. Or­ganic Geo­chem­istry. doi: 10.1016/​j.orggeo­chem.2016.04.003. (2016) AWI
Ruff S.E., Kuhfuss H., Wegener G., Lott C., Ramette A., Wiedling J., Knittel K., Weber M.: Meth­ane seep in shal­low-wa­ter per­meable sed­i­ment har­bors high di­versity of an­aer­obic meth­an­o­trophic com­munit­ies, Elba, Italy. Fron­ti­ers in Mi­cro­bi­o­logy 7:374. doi: 10.3389/​fm­icb.2016.00374. (2016) Frontiers
Sahling H., Borowski C., Escobar-Briones E., Gaytán-Caballero A., Hsu C.-W., Loher M., MacDonald I., Marcon Y., Pape T., Römer M., Rubin-Blum M., Schubotz F., Smrzka D., Wegener G., Bohrmann G.: Massive as­phalt de­pos­its, oil seep­age, and gas vent­ing sup­port abund­ant chemo­syn­thetic com­munit­ies at the Campeche Knolls, south­ern Gulf of Mex­ico. Biogeosciences, 13, 4491-4512, doi:10.5194/​bg-13-4491-2016 (2016) AWI
Salman, V., Berben, T., Bowers, R. M., Woyke, T., Teske, A., & Angert, E. R.: In­sights into the single cell draft gen­ome of “Can­did­atus Achroma­tium palustre”. Stand­ards in ge­n­omic sci­ences, 11(1), 1. (2016) BioMed
Salman-Carvalho V., Fadeev E., Joye S., Teske A.: How clonal is clonal? Gen­ome plas­ti­city across mul­ti­cel­lu­lar seg­ments of a "Can­did­atus Mari­th­rix sp." fil­a­ment from sulf­idic, briny sea­floor sed­i­ments in the Gulf of Mex­ico. Fron­ti­ers in Mi­cro­bi­o­logy 7, 1173. doi: 10.3389/​fm­icb.2016.01173. (2016) Frontiers
Schnetzer J., Kopf A., Bietz M. J., Buttigieg P. L., Fernandez-Guerra A., Pop Ristova P., Glöckner F. O., Kottmann R.: My­OSD 2014: Eval­u­at­ing ocean­o­graphic meas­ure­ments con­trib­uted by cit­izen sci­ent­ists in sup­port of Ocean Sampling Day. Journal of Mi­cro­bi­o­logy & Bio­logy Edu­ca­tion. doi: 10.1128/​jmbe.v17i1.1001 (2016) ASM
Sen A., Ondréas H., Gaillot A., Marcon Y., Augustin J.M., Olu K.: The use of mult­i­beam backs­cat­ter and ba­thy­metry as a means of identi­fy­ing faunal as­semblages in a deep-sea cold seep. Deep Sea Re­search Part I: Ocean­o­graphic Re­search Pa­pers, 110. 33-49. doi:10.1016/​j.dsr.2016.01.005 (2016) ScienceDirect
Soltwedel T., Bauerfeind E., Bergmann M., Bracher A., Budaeva N., Busch K., Cherkasheva A., Fahl K., Grzelak K., Hasemann C., Jacob M., Kraft A., Lalande C., Metfies K., Nöthig E.M., Meyer K., Quéric N.V., Schewe I., Wlodarska-Kowalczuk M., Klages M.: Nat­ural vari­ab­il­ity or an­thro­po­gen­ic­ally-in­duced vari­ation? In­sights from 15 years of mul­tidiscip­lin­ary ob­ser­va­tions at the arc­tic open-ocean LTER site HAUS­GARTEN. Eco­lo­gical In­dic­at­ors, 65, pp. 89-102. (2016) ScienceDirect
Vonnahme T. R., Devetter, M., Žárský, J. D., Šabacká, M., & Elster, J.: Con­trols on mi­croalgal com­munity struc­tures in cryo­con­ite holes upon high-Arc­tic gla­ciers, Sval­bard. Biogeosciences, 13(3), 659-674. doi:10.5194/​bg-13-659-2016 (2016) Biogeosciences
Wegener G., Kellermann, M.Y., Elvert.: Track­ing activ­ity and func­tion of mi­croor­gan­isms by stable iso­tope prob­ing of mem­brane lip­ids (in­vited re­view). Cur­rent Opin­ion in Bi­o­tech­no­logy. doi: 10.1016/​j.cop­bio.2016.04.022 (2016) PubMed
Wegener G., Krukenberg V., Ruff S.E., Kellermann M.Y., Knittel K.: Meta­bolic cap­ab­il­it­ies of mi­croor­gan­isms in­volved in and as­so­ci­ated with the an­aer­obic ox­id­a­tion of meth­ane. Fron­ti­ers in Mi­cro­bi­o­logy. doi: 10.3389/​fm­icb.2016.00046. (2016) Frontiers
Wenzhöfer F., Kazumasa O., Middelboe M., Turnewitsch R., Toyofuku T., Kitazato H., Glud R.N.: Benthic car­bon min­er­al­iz­a­tion in hadal trenches: As­sess­ment by in situ O2 mi­cro­pro­file meas­ure­ments. Deep Sea Re­search I, 116, 276-286 (2016) Sciencedirect
Winkel M., Salman-Carvalho, V., Woyke, T., Richter, M., Schulz-Vogt, H. N., Flood, B., Bailey, J. V., Mußmann, M.: Single-cell se­quen­cing of Thio­mar­gar­ita re­veals ge­n­omic flex­ib­il­ity for ad­apt­a­tion to dy­namic redox con­di­tions. Fron­ti­ers in Mi­cro­bi­o­logy, 7, 964. doi: 10.3389/​fm­icb.2016.00964. (2016) Frontiers
Yilmaz P., Yarza P., Rapp J.Z., Glöckner F.O.: Ex­pand­ing the World of Mar­ine Bac­terial and Ar­chaeal Clades. Fron­ti­ers in Mi­cro­bi­o­logy. 6:1524. doi: 10.3389/​fm­icb.2015.01524. (2016) Frontiers
Zawierucha K., Ostrowska, M., Vonnahme, T.R., Devetter, A.M., Nawrot, P., Lehmann, S., Kolicka, M.: Di­versity and dis­tri­bu­tion of Tar­di­grada in Arc­tic cryo­con­ite holes. Journal of Lim­no­logy. doi:10.4081/​jlim­nol.2016.1453 (2016) JoL
Diploma theses / Master theses
Vonnahme T.R.: Mi­cro­bial di­versity and func­tion of deep-sea man­ganese nod­ule eco­sys­tems. Uni­versity of Bre­men/​Max-Planck In­sti­tute for Mar­ine Mi­cro­bi­o­logy, Bre­men, Ger­many (2016).
Ph.D. theses
Hassenrück C.: Im­plic­a­tions of ocean acid­i­fic­a­tion for mi­cro­bial life and for mi­cro­bial in­ter­ac­tions. Uni­versity of Bre­men/​Max Planck In­sti­tute for Mar­ine Mi­cro­bi­o­logy. PhD thesis. (2016)
Other publications Book chapter
Bienhold C. and Boetius A.: Mik­roor­gan­is­men des Tief­see­bodens: Viel­falt, Ver­teilung und Funk­tion. In: Fasz­in­a­tion Meeres­forschung. Ein öko­lo­gisches Lesebuch. 2. Au­flage. Ed­itoren: G. Hempel, K. Bis­chof, W. Ha­gen, Springer-Spek­trum Ver­lag, Heidel­berg Springer
Conference Proceedings
Wenzhöfer F., Lemburg J., Hofbauer M., Lehmenhecker S., Färber P.: „TRAMPER - An autonom­ous crawler for long-term benthic oxy­gen flux stud­ies in re­mote deep sea eco­sys­tems“ OCEANS 2016 MTS/​IEEE Monterey, 1-6. doi: 10.1109/​OCEANS.2016.7761217AWI
Wenzhöfer F., Wulff T., Flögel S., Sommer S., Waldmann C.: „ROBEX - in­nov­at­ive ro­botic tech­no­lo­gies for ocean ob­ser­va­tions, a deep-sea demon­stra­tion mis­sion.” OCEANS 2016 MTS/​IEEE Monterey, 1 – 8. DOI: 10.1109/​OCEANS.2016.7761215 (2016) AWI

Mar­ine Iso­tope Geo­chem­istry

Behrens M.K., Muratli J., Pradoux C., Wu Y., Böning P., Brumsack H.-J., Goldstein S.L., Haley B., Jeandel C., Paffrath R., Pena L.D., Schnetger B., Pahnke K.: Rapid and pre­cise ana­lysis of rare earth ele­ments in small volumes of sea­wa­ter - Method and in­ter­com­par­ison. Mar­ine Chem­istry 186, 110-120. doi: doi:10.1016/​j.mar­chem.2016.08.006. (2016) ScienceDirect
Böning P., Ehlert C., Niggemann J., Schnetger B., Pahnke K.: Thal­lium dy­nam­ics in the Weser es­tu­ary (NW Ger­many). Es­tu­ar­ine and Coastal Shelf Sci­ence. in press. ScienceDirect
Doering K., Ehlert C., Grasse P., Crosta X., Fleury S., Frank M., Schneider R.: Dif­fer­ences between mono-gen­eric and mixed di­atom sil­icon iso­tope com­pos­i­tions trace present and past nu­tri­ent util­isa­tion off Peru. Geochim­ica et Cosmochim­ica Acta 177, 30-47. doi: doi:10.1016/​j.gca.2015.12.029. (2016) ScienceDirect
Doering K., Erdem Z., Ehlert C., Fleury S., Frank M., Schneider R.: Changes in di­atom pro­ductiv­ity and up­welling in­tens­ity off Peru since the Last Gla­cial Max­imum: Re­sponse to basin-scale at­mo­spheric and oceanic for­cing. Pa­leocean­o­graphy, n/​a-n/​a. doi: 10.1002/​2016PA002936. (2016) Wiley
Ehlert C., Reckhardt A., Greskowiak J., Liguori B.T.P., Böning P., Paffrath R., Brumsack H.-J., Pahnke K.: Trans­form­a­tion of sil­icon in a sandy beach eco­sys­tem: In­sights from stable sil­icon iso­topes from fresh and sa­line ground­wa­ters. Chem­ical Geo­logy 440, 207-218. doi: http://​dx.doi.org/​10.1016/​j.chemgeo.2016.07.015. (2016) ScienceDirect
Filippova A., Frank M., Kienast M., Rickli J., Hathorne E.C., Yashayaev I., Böning P., Pahnke K.: Wa­ter mass cir­cu­la­tion and weath­er­ing in­puts in the Lab­rador Sea based on coupled Hf-Nd iso­tope com­pos­i­tion and rare earth ele­ment dis­tri­bu­tion. Earth and Plan­et­ary Sci­ence Let­ters. (ac­cep­ted) http://www.sciencedirect.com/science/article/pii/S0016703716306664Sci­en­ce­Dir­ect
Fröllje H., Pahnke K., Schnetger B., Brumsack H.-J., Dulai H., Fitzsimmons J.N.: Hawaiian im­print on dis­solved Nd and Ra iso­topes and rare earth ele­ments in the cent­ral North Pa­cific: local sur­vey and sea­sonal vari­ab­il­ity. Geochim­ica et Cosmochim­ica Acta 189, 110-131. doi: 10.1016/​j.gca.2016.06.001. (2016) ScienceDirect
Grasse P., Brzezinski M., Cardinal D., de Souza G.F., Andersson P., Closset I., Cao Z., Dai M., Ehlert C., Estrade N., Francois R., Frank M., Jiang G., Jones J.L., Kooijman E., Liu Q., Lu D., Pahnke K., Ponzevera E., Schmitt M., Sun X., Sutton J., Thil F., Weis D., Wetzel F., Zhang A., Zhang J., Zhang Z.: GEO­TRACES In­ter­cal­ib­ra­tion of the Stable Sil­icon Iso­tope Com­pos­i­tion of Dis­solved Si­li­cic Acid in Sea­wa­ter. Journal of Ana­lyt­ical Atomic Spec­tro­metry. doi: 10.1039/​C6­JA00302H. (2016) RSC
Grasse P., Ryabenko E., Ehlert C., Altabet M.A., Frank M.: Sil­icon and ni­tro­gen cyc­ling in the up­welling area off Peru: A dual iso­tope ap­proach. Lim­no­logy and Ocean­o­graphy. doi: doi: 10.1002/​lno.10324. (2016) Wiley
Jonell T.N., Clift P.D., van Hoang L., Hoang T., Carter A., Wittmann H., Böning P., Pahnke K., Rittenour T.M.: Con­trols on Erosion Pat­terns and Sed­i­ment Trans­port in a Mon­soonal, Tec­ton­ic­ally Qui­es­cent Drain­age, Song Gianh, Cent­ral Vi­et­nam. Basin Re­search, 1-25. doi: doi:10.1111/​bre.12199. (2016) ResearchGate
Meinhardt A.K., Pahnke K., Böning P., Schnetger B., Brumsack H.J.: Cli­mate change and re­sponse in bot­tom wa­ter cir­cu­la­tion and sed­i­ment proven­ance in the Cent­ral Arc­tic Ocean since the Last Gla­cial. Mar­ine Chem­istry 427, 98-108. doi: doi: 10.1016/​j.chemgeo.2016.02.019. (2016) ScienceDirect
Struve T., van de Flierdt T., Robinson L.F., Bradtmiller L.I., Hines S.K., Adkins J.F., Lambelet M., Crocket K.C., Kreissig K., Coles B., Auro M.E.: Neo­dy­mium iso­tope ana­lyses after com­bined ex­trac­tion of ac­tin­ide and lanthan­ide ele­ments from sea­wa­ter and deep-sea coral ar­ag­on­ite. Geo­chem­istry, Geo­phys­ics, Geo­sys­tems, n/​a-n/​a. doi: 10.1002/​2015GC006130. (2016) Wiley
Ronge T., Tiedemann R., Lamy F., Köhler P., Alloway B., De Pol-Holz R., Pahnke K., Southon J., Wacker L.: Ra­diocar­bon con­straints on the ex­tent and evol­u­tion of the South Pa­cific gla­cial car­bon pool. Nature Com­mu­nic­a­tions 7, 11487. doi: doi:10.1038/​ncomms11487. (2016) PubMed
Wu J., Böning P., Pahnke K., Tachikawa K., de Lange G.J.: Un­rav­el­ing North-African riv­er­ine and eolian con­tri­bu­tions to cent­ral Medi­ter­ranean sed­i­ments dur­ing Holo­cene sap­ro­pel S1 form­a­tion. Qua­tern­ary Sci­ence Re­views 152, 31-48. doi: doi:10.1016/​j.quas­cirev.2016.09.029. (2016) ScienceDirect

Mo­lecu­lar Eco­logy Group

Amann R., and R. Rossello-Mora.: After all, only mil­lions? mBio 7(4):e00999-16 (doi:10.1128/​mBio.00999-16). (2016) ASM
Barbeyron T., F. Thomas, V. Barbe, H. Teeling, C. Schenowitz, C. Dossat, A. Goesmann, C. Leblanc, F.O. Glöckner, M. Czjzek, R. Amann, and G. Michel: Hab­itat und taxon as driv­ing forces of car­bo­hydrate cata­bol­ism in mar­ine het­ero­trophic bac­teria: ex­ample of the model al­gae-as­so­ci­ated bac­terium Zo­bel­lia galactani­vor­ans DsijT. En­viron. Mi­cro­biol. 18:4610-4627 (doi: 10.1111/​1462-2920.13584). (2016) Wiley
Barrero-Canosa C. Moraru, L. Zeugner, B.M. Fuchs, and R. Amann: Dir­ect-gene­FISH: a sim­pli­fied pro­tocol for the sim­ul­tan­eous de­tec­tion and quan­ti­fic­a­tion of genes and rRNA in mi­croor­gan­isms. En­viron. Mi­cro­biol. early on­line (doi: 10.1111/​1462-2920.13432). (2016) PubMed
Bennke C.M., G. Reintjes, M. Schattenhofer, A. Ellrott, J. Wulf, M. Zeder, and B.M. Fuchs.: Modi­fic­a­tion of a High-Through­put Auto­matic Mi­cro­bial Cell Enu­mer­a­tion Sys­tem for Ship­board Ana­lyses. Appl. En­viron. Mi­cro­biol. 82:3289-3296. (2016) PubMed
Bennke C.M., K. Krüger, L. Kappelmann, S. Huang, A. Gobet, M. Schüler, V. Barbe, B.M. Fuchs, G. Michel, H. Teeling, and R.I. Amann: Poly­sac­char­ide util­iz­a­tion loci of Bac­teroid­etes from two con­trast­ing open ocea sites in the North At­lantic. En­viron. Mi­cro­biol. 18:4456-4470 (doi: 10.1111/​1462-2920.13429). (2016) PubMed
Berg J.S., D. Michellod, P. Pjevac, C. Martinez-Perez, C.R.T. Buckner, P.F. Hach. C.J. Schubert, J. Milucka, M.M.M. Kuypers: In­tense cryptic mi­cro­bial iron cyc­ling in the low iron wa­ter column of the meromictic Lake Cadagno. En­viron. Mi­cro­biol. 18:5288-5302. (2016) PubMed
Bruder L.M., M. Dörkes, B.M. Fuchs, W. Ludwig and W. Liebl.: Flow cyto­met­ric sort­ing of fecal bac­teria after in situ hy­brid­iz­a­tion with poly­nuc­leotide probes. Syst. Appl. Mi­cro­biol. 39:464-475. (2016) PubMed
Dyksma S., K. Bischof, B.M. Fuchs, K. Hoffmann, D. Meier, A. Meyerdierks, P. Pjevac, D. Probandt, M. Richter, R. Stepanauskas, and M. Mussmann.: Ubi­quit­ous Gammapro­teo­bac­teria dom­in­ate dark car­bon fix­a­tion in coastal sed­i­ments. ISME J. 10:1939-1953. (2016) PubMed
Krukenberg V., K. Harding, M. Richter, F.O. Glöckner, F.O., H.R. Gruber-Vodicka, B. Adam, J.S. Berg, K. Knittel, H.E. Tegetmeyer, A. Boetius, and G. Wegener: Can­did­atus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­viron. Mi­cro­biol. 18:3073-3091. (2016) PubMed
Laso-Perez G. Wegener, K. Knittel, F. Widdel, KJ. Harding, V. Krukenberg, D.V. Meier, M. Richter, H.E. Tegetmeyer, D. Riedel, H.H. Richnow, L. Adrian, T. Reemtsma, O.J. Lechtenfeld, and F. Musat.: Ther­mo­philic ar­chaea ac­tiv­ate butan via al­kyl-coen­zyme M form­a­tion. Nature 539:396-401. (2016) PubMed
Martinez-Perez C., W. Mohr, C.R. Löscher, J. Dekaezemacker, S. Littmann, P. Yilmaz, N. Lehnen, B.M. Fuchs, G. Lavik, R.A. Schmitz, J. LaRoche, and M.M.M. Kuypers.: The small uni­cel­lu­lar diazo­trophic sym­biont, UCYN-A, is a key player in the mar­ine ni­tro­gen cycle. Nature Mi­cro­bi­o­logy 1, 16163. (2016) PubMed
Meier D., W. Bach, P.R. Girguis, H. Gruber-Vodicka, E.P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks: Het­ero­trophic Pro­teo­bac­teria in the vi­cin­ity of dif­fuse hy­dro­thermal vent­ing. En­viron. Mi­cro­biol. 18:4348-4368 (doi: 10.1111/​1462-2920.13304). (2016) PubMed
Munoz R., R. Rossello-Mora, and R. Amann.: Re­vised phylo­geny of Bac­teroid­etes and pro­posal of six­teen new taxa and two new com­bin­a­tions in­clud­ing Rhodo­ther­m­aeota phyl. nov. Sys­tem. Appl. Mi­cro­biol. 39:281-296 (doi: 10.1016/​j.syapm.2016.04.004). (2016) PubMed
Panschin I., M. Becher, Susanne Verbarg, C. Spöer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R. Hahnke: De­scrip­tion of Gramella for­setii sp.nov., a mar­ine Fla­vobac­teri­aceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of Gramella gaet­bulic­ola Cho et al. 2011. Int. J. Sys­tem. Evol. Mi­cro­biol. (ac­cep­ted doi: 10.1099/​ijsem.0.001700). (2016) PubMed
Pizzetti I., F. Schulz, T. Tyml, B.M. Fuchs, R. Amann, M. Horn, and S. Fazi.: Chlamydial sea­sonal dy­nam­ics and isol­a­tion of ‘Can­did­atus Nep­tun­och­lamydia vex­il­lifer­ae’ from a Tyrrhe­nian coastal lake. En­vir­on­mental Mi­cro­bi­o­logy 18:2405-2417 (doi: 10.1111/​1462-2920.13111) (2016) PubMed
Pizzetti I., G. Lupini, F. B. Aubry, F. Acri, B.M. Fuchs, and S. Fazi: In­flu­ence of Po River run­off on the bac­terioplank­ton com­munity along trophic and sa­lin­ity gradi­ents in the North­ern Ad­reatic Sea. Mar. Ecol. (doi:10.1111/​maec.12355). (2016) Wiley
Raupach M.J., R. Amann, Q.D. Wheeler, and C. Roos.: The ap­plic­a­tion of “-om­ics” tech­no­lo­gies for the clas­si­fic­a­tion and iden­ti­fic­a­tion of an­im­als. Org. Divers. Evol. 16:1-12. (2016) Springer
Ruff S.E., H. Kuhfuss, G. Wegener, C. Lott, A. Ramette, J. Wiedling, K. Knittel, and M. Weber: Meth­ane seep in shal­low-wa­ter per­meable sed­i­ment har­bors high di­versity of an­aer­obic meth­an­o­trophic com­munit­ies, Elba, Italy. Front. Mi­cro­biol. 7:374 (doi: 10.3389/​fm­icb.2016.00374) (2016) Frontiers
Schimak M.P., M. Kleiner, S. Wetzel, M. Liebeke, N. Dubilier, and B.M. Fuchs.: MiL-FISH: Mul­til­abeled oli­go­nuc­leotides for fluor­es­cence in situ hy­brid­iz­a­tion im­prove visu­al­iz­a­tion of bac­terial cells. Appl. En­viron. Mi­cro­biol. 82, 62-70. (2016) PubMed
Stagars M., E. Ruff, R. Amann, and K. Knittel.: High di­versity of an­aer­obic al­kane-de­grad­ing mi­cro­bial com­munit­ies in mar­ine seep sed­i­ments based on (1-methylal­kyl)suc­cin­ate syn­thase genes. Fron­ti­ers Mi­cro­biol. 6:1511(doi: 10.3389/​fm­icb.2015.01511) (2016) PubMed
Teeling H., B.M. Fuchs, C.M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Waldmann, C. Quast, F.O. Glöckner, J. Lucas, A. Wichels, G. Gerdts, K.H. Wiltshire, and R.I. Amann.: Re­cur­ring pat­terns in bac­terioplank­ton dy­nam­ics dur­ing coastal spring al­gae blooms. eLife 5:e11888 (doi:10.7554/​eLife.11888). (2016) PubMed
Wegener G., V. Krukenberg, S.E. Ruff, M.Y. Kellermann, and K. Knittel: Meta­bolic cap­ab­il­it­ies of mi­croor­gan­isms in­volved in and as­so­ci­ated with the an­aer­obic ox­id­a­tion of meth­ane. Front. Mi­cro­biol. 7:e46. (2016) Frontiers

Mi­cro­bial Ge­n­om­ics Group

Barbeyron T., F. Thomas, V. Barbe, H. Teeling, C. Schenowitz, C. Dossat, A. Goesmann, C. Leblanc, F. O. Glöckner, M. Czjzek, et al.: Hab­itat and taxon as driv­ing forces of car­bo­hydrate cata­bol­ism in mar­ine het­ero­trophic bac­teria: ex­ample of the model al­gae-as­so­ci­ated bac­terium Zo­bel­lia galactani­vor­ans DsijT. En­viron. Mi­cro­biol. 18:4610-4627. (2016) Wiley
Busch J., R. Bardaji, L. Ceccaroni, A. Friedrichs, J. Piera, C. Simon, P. Thijsse, M. Wernand, H. van der Woerd, and O. Zielinski: Cit­izen Bio-Op­tical Ob­ser­va­tions from Coast- and Ocean and Their Com­pat­ib­il­ity with Ocean Col­our Satel­lite Meas­ure­ments. Re­mote Sens­ing 8:879. (2016) MDPI
Casaregola S., A. Vasilenko, P. Romano, V. Robert, S. Ozerskaya, A. Kopf, F. O. Glöckner, and D. Smith.: An In­form­a­tion Sys­tem for European cul­ture col­lec­tions: the way for­ward. Spring­er­Plus 5:772. (2016) PubMed
Droege G., K. Barker, O. Seberg, J. Coddington, E. Benson, W. G. Berendsohn, B. Bunk, C. Butler, E. M. Cawsey, J. Deck, et al.: The Global Gen­ome Biod­iversity Net­work (GGBN) Data Stand­ard spe­cific­a­tion. Data­base 2016:baw125-baw125. (2016) PubMed
Dyksma S., K. Bischof, B. M. Fuchs, K. Hoffmann, D. Meier, A. Meyerdierks, P. Pjevac, D. Probandt, M. Richter, R. Stepanauskas, et al.: Ubi­quit­ous Gammapro­teo­bac­teria dom­in­ate dark car­bon fix­a­tion in coastal sed­i­ments. ISME J:on­line. (2016)
Federhen S., R. Rossello-Mora, H.-P. Klenk, B. J. Tindall, K. T. Konstantinidis, W. B. Whitman, D. Brown, D. Labeda, D. Ussery, G. M. Garrity, et al.: Meet­ing re­port: Gen­Bank mi­cro­bial ge­n­omic tax­onomy work­shop (12--13 May, 2015). SIGS:11-15. (2016) BioMed
Hardisty A. R., F. Bacall, N. Beard, M. P. Balcazar-Vargas, B. Balech, Z. Barcza, S. J. Bourlat, R. De Giovanni, Y. de Jong, F. De Leo, et al.: BioVeL: a vir­tual labor­at­ory for data ana­lysis and mod­el­ling in biod­iversity sci­ence and eco­logy. BMC eco­logy 16:49. (2016) PubMed
Kopf A., J. Schnetzer, and F. O. Glöckner: Un­der­stand­ing Mar­ine Mi­crobes, the Driv­ing En­gines of the Ocean. Ocean. Front Young Minds. 4:1-9. (2016) Frontiers
Kottman R., and F. O. Glöckner: Erken­n­isse aus einem Meer an Daten. Wie die Sys­tem­bio­lo­gie zum Ver­ständ­nis mar­iner Ökosysteme beiträgt. Sys­tem­bio­lo­gie 11:8-11. (2016)
Kozlov A. M., J. Zhang, P. Yilmaz, F. O. Glöckner, and A. Stamatakis: Phylo­geny-aware iden­ti­fic­a­tion and cor­rec­tion of taxo­nom­ic­ally mis­labeled se­quences. Nuc­leic Acid Res. (2016) PubMed
Krukenberg V., K. Harding, M. Richter, F. O. Glöckner, H. R. Gruber-Vodicka, B. Adam, J. S. Berg, K. Knittel, H. E. Tegetmeyer, A. Boetius, et al.: Can­did­atus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­viron. Mi­cro­biol.:on­line. (2016) PubMed
Martinez-Perez C., W. Mohr, C. R. Loscher, J. Dekaezemacker, S. Littmann, P. Yilmaz, N. Lehnen, B. M. Fuchs, G. Lavik, R. A. Schmitz, et al.: The small uni­cel­lu­lar diazo­trophic sym­biont, UCYN-A, is a key player in the mar­ine ni­tro­gen cycle. Nature mi­cro­bi­o­logy 1:16163. (2016) nature
Meier D., W. Bach, P. R. Girguis, H. Gruber-Vodicka, E. P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks: Het­ero­trophic Pro­teo­bac­teria in the vi­cin­ity of dif­fuse hy­dro­thermal vent­ing. En­viron Mi­cro­biol:on­line. (2016) PubMed
Rat für Informationsinfrastrukturen (RfII) and F. O. Glöckner: Leis­tung aus Viel­falt www.rfii.de. (2016) rfii
Richter M., R. Rosselló-Móra, F. O. Glöckner, and J. Peplies: JSpe­ciesWS: a web server for proka­ryotic spe­cies cir­cum­scrip­tion based on pair­wise gen­ome com­par­ison. Bioin­form­at­ics 32:929-931. (2016) PubMed
Romano S., A. Fernàndez-Guerra, F. J. Reen, F. O. Glöckner, S. P. Crowley, O. O'Sullivan, P. D. Cotter, C. Adams, A. D. W. Dobson, and F. O'Gara: Com­par­at­ive Ge­n­omic Ana­lysis Re­veals a Di­verse Rep­er­toire of Genes In­volved in Proka­ryote-Eu­k­a­ryote In­ter­ac­tions within the Pseudovi­brio Genus. Fron­ti­ers in Mi­cro­bi­o­logy 7:387. (2016) Frontiers
Schnetzer J., A. Kopf, M. J. Bietz, P. L. Buttigieg, A. Fernandez-Guerra, A. P. Ristov, F. O. Glöckner, and R. Kottmann: My­OSD 2014: Eval­u­at­ing Ocean­o­graphic Meas­ure­ments Con­trib­uted by Cit­izen Sci­ent­ists in Sup­port of Ocean Sampling Day †. J. Mi­cro­biol. Biol. Educ. 17:163-171. (2016) PubMed
Sinclair L., U. Z. Ijaz, L. J. Jensen, M. J. L. Coolen, C. Gubry-Rangin, A. Chroňáková, A. Oulas, C. Pavloudi, J. Schnetzer, A. Weimann, et al.: Se­qenv: link­ing se­quences to en­vir­on­ments through text min­ing. PeerJ 4:e2690. (2016) PubMed
Tauch A., and F. O. Glöckner: de.NBI und GF­Bio. labor&more 2:9-12. (2016) labor&more
Teeling H., B. M. Fuchs, C. M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Waldmann, C. Quast, F. O. Glöckner, et al.: Re­cur­ring pat­terns in bac­terioplank­ton dy­nam­ics dur­ing coastal spring al­gae blooms. eLife 5:e11888. (2016) PubMed
ten Hoopen P., L. W. Ramona, K. S. C. Ethalinda, C. Guy, C. James, J. Anjanette, K.-M. Ilene, and Y. Pelin: Sup­port­ing data for "Plant Spe­ci­men Con­tex­tual Data Con­sensus". GigaS­cience Data­base. (2016) GIGA
Tsesmetzis N., P. Yilmaz, P. C. Marks, N. C. Kyrpides, I. M. Head, and B. P. Lomans: MIxS-HCR: a MIxS ex­ten­sion de­fin­ing a min­imal in­form­a­tion stand­ard for se­quence data from en­vir­on­ments per­tain­ing to hy­dro­car­bon re­sources. Stand Ge­n­omic Sci 11:78. (2016) PubMed
Varsos C., T. Patkos, A. Oulas, C. Pavloudi, A. Gougousis, U. Z. Ijaz, I. Filiopoulou, N. Pattakos, E. Vanden Berghe, A. Fernández-Guerra, et al.: Op­tim­ized R func­tions for ana­lysis of eco­lo­gical com­munity data us­ing the R vir­tual labor­at­ory (RvLab). Biod­iversity Data Journal:e8357. (2016) PubMed
Winkel M., V. Carvalho, T. Woyke, M. Richter, H. N. Schulz-Vogt, B. Flood, J. Bailey, and M. Mußmann: Single-cell se­quen­cing of Thio­mar­gar­ita re­veals ge­n­omic flex­ib­il­ity for ad­apt­a­tion to dy­namic redox con­di­tions. Fron­ti­ers in Mi­cro­bi­o­logy 7. (2016) PubMed
Yilmaz P., P. Yarza, J. Z. Rapp, and F. O. Glöckner: Ex­pand­ing the World of Mar­ine Bac­terial and Ar­chaeal Clades. Fron­ti­ers in Mi­cro­bi­o­logy 6:1-29. (2016) PubMed

De­part­ment of Biogeo­chem­istry

Berg J. S., Michellod D., Pjevac P., Martinez-Perez C., Buckner C. R. T., Hach P. F., Schubert C. J., Milucka J. and Kuypers M.M.M.: In­tens­ive cryptic mi­cro­bial iron cyc­ling in the low iron wa­ter column of the meromictic Lake Cadagno. En­vir­on­mental Mi­cro­bi­o­logy, 18: 5288–5302. (2016) PubMed
Braun S., Morono Y., Littmann S, Kuypers M., Aslan H., Dong M., Jorgensen Bo B. and Lomstein B.A.: Size and Car­bon Con­tent of Sub-sea­floor Mi­cro­bial Cells at Land­sort Deep, Baltic Sea. Fron­ti­ers in Mi­cro­bi­o­logy. 7:1375. (2016) PubMed
Bristow L.A., Dalsgaard T., Tiano L., Mills D., Bertagnolli A., Wright J.J., Hallam S.J., Ulloa O., Revsbech N.P., Canfield D. and Thamdrup B.: Am­monium and ni­trite ox­id­a­tion at nanomolar oxy­gen con­cen­tra­tions in oxy­gen min­imum zone wa­ters. Pro­ceed­ings of the Na­tional Academy of Sci­ences 113(38): 10601-10606; doi: 10.1073/​pnas.1600359113. (2016) PubMed
Hamann E., H. Gruber-Vodicka, M. Kleiner, H. E. Tegetmeyer, D. Riedel, S. Littmann, J. Chen, J. Milucka, B. Viehweger, K. W. Becker, X. Dong, C. W. Stairs, K.-U. Hinrichs, M. W. Brown, A. J. Roger, M. Strous: En­vir­on­mental Brevi­atea har­bour mu­tu­al­istic Ar­co­bac­ter epi­bionts. Nature 534, 254–258. (2016) PubMed
Hamilton T.L., Bovee R.J., Sattin S.R., Mohr W., Gilhooly III W.P., Lyons T.W., Pearson A., Macalady J.L.: Car­bon and Sul­fur Cyc­ling be­low the Chemo­cline in a Meromictic Lake and the Iden­ti­fic­a­tion of a Novel Taxo­nomic Lin­eage in the FCB Su­per­phylum, Can­did­atus Ae­giribac­teria. Fron­ti­ers in Mi­cro­bi­o­logy, http://​dx.doi.org/​10.3389/​fm­icb.2016.00598. (2016) PubMed
Kamp A., Stief P., Bristow L.A., Thamdrup B. and Glud R.N.: In­tra­cel­lu­lar Ni­trate of Mar­ine Di­at­oms as a Driver of An­aer­obic Ni­tro­gen Cyc­ling in Sink­ing Ag­greg­ates. Fron­ti­ers in Mi­cro­bi­o­logy 7: 1669; doi:10.3389/​fm­icb.2016.01669. (2016) PubMed
Klawonn I., Nahar N., Walve N., Andersson B., Olofsson M., Sveden J.B, Littmann S., Whitehouse M.J, Kuypers M.M.M. and Ploug H.: Cell-spe­cific ni­tro­gen- and car­bon-fix­a­tion of cy­anobac­teria in a tem­per­ate mar­ine sys­tem (Baltic Sea). En­vir­on­mental Mi­cro­bi­o­logy (in press). (2016) PubMed
Krukenberg V., Harding K., Richter M., Glöckner F.O., Gruber-Vodicka H.R., Adam B., Berg J.S., Knittel K., Tegetmeyer H.E., Boetius A., Wegener G.: Can­did­atus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­vir­on­mental Mi­cro­bi­o­logy 18(9): 3073-3091. (2016) PubMed
LaFlamme C., Martin L., Jeon H., Reddy S.M., Selvaraja V., Caruso S., Bui T.H., Roberts M.P., Voute F., Hagemann S., Wacey D., Littman S., Wing B., Fiorentini M. and Kilburn M.R.: In situ mul­tiple sul­fur iso­tope ana­lysis by SIMS of pyr­ite, chal­copyr­ite, pyrrhotite, and pent­lan­d­ite to re­fine mag­matic ore ge­netic mod­els. Chem­ical Geo­logy, 444, 1-15, http://​dx.doi.org/​10.1016/​j.chemgeo.2016.09.032 (2016) ScienceDirect
Lehnen N., Marchant H.K., Schwedt A., Milucka J., Lott C., Weber M., Dekaezemacker J., Seah B.K.B., Hach P.F., Mohr W., Kuypers M.M.M.: High rates of mi­cro­bial dinitro­gen fix­a­tion and sulfate re­duc­tion as­so­ci­ated with the Medi­ter­ranean seagrass Posido­nia ocean­ica. Sys­tem­atic and Ap­plied Mi­cro­bi­o­logy 39: 476–483. (2016) PubMed
Louca S., Hawley A.K., Katsev S., Torres-Beltran M., Bhatia M.P., Kheirandish S., Michiels C.C., Capelle D., Lavik G., Doebeli M.: In­teg­rat­ing biogeo­chem­istry with mul­tiomic se­quence in­form­a­tion in a model oxy­gen min­imum zone. Pro­ceed­ings of the Na­tional Academy of Sci­ences, 201602897. (2016) PubMed
Marchant H.K., Holtappels M., Lavik G., Ahmerkamp S., Winter C., Kuypers M.M.: Coupled ni­tri­fic­a­tion–de­ni­tri­fic­a­tion leads to ex­tens­ive N loss in sub­tidal per­meable sed­i­ments. Lim­no­logy and Ocean­o­graphy. (2016) Wiley
Marchant H.K., Mohr W., Kuypers M.M.M.: Re­cent ad­vances in mar­ine N-cycle stud­ies us­ing 15N la­beling meth­ods. Cur­rent Opin­ion in Bi­o­tech­no­logy 41: 53-59. (2016) ScienceDirect
Martínez-Pérez C., Mohr W., Löscher C.R, Dekaezemacker J., Littmann S., Yilmaz P., Lehnen N., Fuchs B.M., Lavik G., Schmitz R.A., LaRoche J .and Kuypers M.M.M.: The small uni­cel­lu­lar diazo­trophic sym­biont, UCYN-A, is a key player in the mar­ine ni­tro­gen cycle. Nature, 16163, DOI: 10.1038/​NMI­CRO­BIOL.2016.163. (2016) nature
Oswald K., C. Jegge, J. Tischer, J. Berg, A. Brand, M. R. Miracle, X. Soria, E. Vicente, M. F. Lehmann, J. Zopfi and C. J. Schubert: Meth­an­o­trophy un­der ver­sat­ile con­di­tions in the wa­ter column of the fer­ru­gin­ous meromictic Lake La Cruz (Spain). Fron­ti­ers in Mi­cro­bi­o­logy, 7, 1762. (2016) PubMed
Oswald K., Milucka J., Brand A., Hach P., Littmann S., Wehrli B., Kuypers M.M.M. and Schubert C. J.: Aer­obic gammapro­teo­bac­terial meth­an­o­trophs mit­ig­ate meth­ane emis­sions from oxic and an­oxic lake wa­ters. Lim­no­logy & Ocean­o­graphy, 61: S101–S118. (2016) Wiley
Schreiber F., Littmann S., Lavik G., Escrig S., Meibom A., Kuypers M.M.M. and Ackermann, M: Phen­o­typic het­ero­gen­eity driven by nu­tri­ent lim­it­a­tion pro­motes growth in fluc­tu­at­ing en­vir­on­ments. Nature Mi­cro­bi­o­logy, 1:16055. (2016) PubMed
Smith H.J, Schmit A., Foster R., Littman S., Kuypers M.M.M., and Foreman C.M.: Biofilms on gla­cial sur­faces: hot­spots for bio­lo­gical activ­ity. Nature Biofilms and Mi­cro­bi­o­mes 2: 16008. (2016) nature
Sokoll S., Lavik G., Sommer S., Goldhammer T., Kuypers M.M., Holtappels M.: Ex­tens­ive ni­tro­gen loss from per­meable sed­i­ments off North‐West Africa. Journal of Geo­phys­ical Re­search: Biogeosciences 121, 1144-1157. (2016) Wiley
Song G., Liu S., Kuypers M., Lavik G.: Ap­plic­a­tion of the iso­tope pair­ing tech­nique in sed­i­ments where anam­mox, de­ni­tri­fic­a­tion, and dis­sim­il­at­ory ni­trate re­duc­tion to am­monium co­ex­ist. Lim­no­logy and Ocean­o­graphy: Meth­ods. (2016) Wiley
Tang T., Mohr W., Sattin S.R., Rogers D.R., Girguis P.R., Pearson A.: Geo­chem­ic­ally dis­tinct car­bon iso­tope dis­tri­bu­tions in Al­lo­chro­ma­tium vinosum DSM 180T grown pho­toauto­troph­ic­ally and pho­to­het­ero­troph­ic­ally. Geo­bi­o­logy DOI: 10.1111/​gbi.12221. (2016) Wiley
Tsementzi D., Wu J., Deutsch S., Nath S., Rodriguez R., Burns A.S., Ranjan P., Sarode N., Malmstrom R.R., Padilla C.C., Stone B.K., Bristow L.A., Larsen M., Glass J.B., Thamdrup B., Woyke T., Konstantinidis K.T. and Stewart F.J.: SAR11 bac­teria linked to ocean an­oxia and ni­tro­gen loss. Nature doi:10.1038/​nature19068. (2016) PubMed

MARUM MPG Brück­en­gruppe Mar­ine Glyko­bi­o­lo­gie

Hehemann J.H., Arevalo P., Datta M.S., Yu X., Corzett C.H., Henschel A., Preheim S.P., Timberlake S., Alm E.J., Polz M.F.: Ad­apt­ive ra­di­ation by waves of gene trans­fer leads to fine-scale re­source par­ti­tion­ing in mar­ine mi­crobes. Nat Com­mun. 22;7:12860. doi: 10.1038/​ncomms12860. PubMed PMID: 27653556; PubMed Cent­ral PM­CID: PM­C5036157. (2016) PubMed
Hobbs J.K., Lee S.M., Robb M., Hof F., Barr C., Abe K.T., Hehemann J.H., McLean R., Abbott D.W., Boraston A.B.: KdgF, the miss­ing link in the mi­cro­bial meta­bol­ism of uro­n­ate sug­ars from pec­tin and al­gin­ate. Proc Natl Acad Sci U S A. 31;113(22):6188-93. doi: 10.1073/​pnas.1524214113. PubMed PMID: 27185956; PubMed­Cent­ral PM­CID: PM­C4896693. (2016) PubMed

Mar­ine Geo­chem­istry Group Geo­chem Pub­lic­a­tions 2016

Bach L. T., J. Taucher, T. Boxhammer, A. Ludwig, N. Aberle-Malzahn, K. Abrahamsson, A. K. Almén, M. E. Asplund, S. Audritz, M. Boersma, E. Breitbarth, C. Bridges, C. Brussaard, A. Brutemark, C. Clemmesen, S. Collins, K. Crawfurd, F. Dahlke, M. Deckelnick, T. Dittmar, R. Doose, S. Dupont, T. Eberlein, S. Endres, A. Engel, J. Engström-Öst, S. Febiri, D. Fleischer, P. Fritsche, M. Gledhill, G. Göttler, M. Granberg, H. P. Grossart, A. Grifos, L. Hoffmann, A. Karlsson, M. Klages, U. John, F. Jutfelt, I. Köster, J. Lange, E. Leo, S. Lischka, K. Lohbeck, B. Lundve, F. C. Mark, M. Meyerhöfer, M. Nicolai, C. Pansch, B. Petersson, T. Reusch, K. R. De Moraes, M. Schartau, M. Scheinin, K. G. Schulz, U. Schwarz, M. Stenegren, M. Stiasny, D. Storch, A. Stuhr, L. Sswat, M. Svensson, P. Thor, M. Voss, D. Van De Waal, N. Wannicke, S. Wohlrab, A. Wulff, E. P. Achterberg, M. Algueró-Muñiz, L. G. Anderson, J. Bellworthy, J. Büdenbender, J. Czerny, Y. Ericson, M. Esposito, M. Fischer, M. Haunost, D. Hellemann, H. G. Horn, T. Hornick, J. Meyer, M. Sswat, M. Zark, and U. Riebesell: In­flu­ence of ocean acid­i­fic­a­tion on a nat­ural winter-to-sum­mer plank­ton suc­ces­sion: First in­sights from a long-term meso­cosm study draw at­ten­tion to peri­ods of low nu­tri­ent con­cen­tra­tions. PLOS ONE 11: e0159068. 0159061-0159033. (2016) PubMed
Benavides M., S. Bonnet, N. Hernández, A. M. Martínez-Pérez, M. Nieto-Cid, X. A. Álvarez-Salgado, I. Baños, M. F. Montero, I. P. Mazuecos, J. M. Gasol, H. Osterholz, T. Dittmar, I. Berman-Frank, and J. Arístegui.: Basin-wide N2 fix­a­tion in the deep wa­ters of the Medi­ter­ranean Sea. Global Biogeo­chem­ical Cycles 30: 952-961. (2016) Wiley
Bergen B., S. Endres, A. Engel, M. Zark, T. Dittmar, U. Sommer, and K. Jürgens: Acid­i­fic­a­tion and warm­ing af­fect prom­in­ent bac­teria in two sea­sonal phyto­plank­ton bloom meso­cosms. En­vir­on­mental Mi­cro­bi­o­logy 18: 4579-4595. (2016) PubMed
Gomez-Saez G. V., J. Niggemann, T. Dittmar, A. M. Pohlabeln, S. Q. Lang, A. Noowong, T. Pichler, L. Wörmer, and S. I. Bühring: Mo­lecu­lar evid­ence for abi­otic sul­fur­iz­a­tion of dis­solved or­ganic mat­ter in mar­ine shal­low hy­dro­thermal sys­tems. Geochim­ica et Cosmochim­ica Acta 190: 35-52. (2016) ScienceDirect
Hawkes J. A., T. Dittmar, C. Patriarca, L. Tranvik, and J. Bergquist: Eval­u­ation of the or­bit­rap mass spec­tro­meter for the mo­lecu­lar fin­ger­print­ing ana­lysis of nat­ural dis­solved or­ganic mat­ter. Ana­lyt­ical Chem­istry 88: 7698-7704. (2016) ACS
Hawkes J. A., C. T. Hansen, T. Goldhammer, W. Bach, and T. Dittmar: Mo­lecu­lar al­ter­a­tion of mar­ine dis­solved or­ganic mat­ter un­der ex­per­i­mental hy­dro­thermal con­di­tions. Geochim­ica et Cosmochim­ica Acta 175: 68-85. (2016) ScienceDirect
Kleindienst S., M. Seidel, K. Ziervogel, S. Grim, K. Loftis, S. Harrison, S. Y. Malkin, M. J. Perkins, J. Field, M. L. Sogin, T. Dittmar, U. Passow, P. Medeiros, and S. B. Joye: Abil­ity of chem­ical dis­pers­ants to re­duce oil spill im­pacts re­mains un­clear. Pro­ceed­ings of the Na­tional Academy of Sci­ences of the United States of Amer­ica 113: E1422-E1423. (2016) ResearchGate
Koch B. P., and T. Dittmar: Er­ratum: From mass to struc­ture: An aro­mati­city in­dex for high-res­ol­u­tion mass data of nat­ural or­ganic mat­ter (Rapid Com­mu­nic­a­tions in Mass Spec­tro­metry (2006) 20 (926-932) DOI: 10.1002/​rcm.2386). Rapid Com­mu­nic­a­tions in Mass Spec­tro­metry 30: 250. (2016) Wiley
Linkhorst A., T. Dittmar, and H. Waska: Mo­lecu­lar frac­tion­a­tion of dis­solved or­ganic mat­ter in a shal­low sub­ter­ranean es­tu­ary: the role of the iron cur­tain. En­vir­on­mental Sci­ence & Tech­no­logy: doi:10.1021/​acs.est.1026b03608. (2016) ACS
Lucas J., I. Koester, A. Wichels, J. Niggemann, T. Dittmar, U. Callies, K. H. Wiltshire, and G. Gerdts: Short-term dy­nam­ics of north sea bac­terioplank­ton-dis­solved or­ganic mat­ter co­her­ence on mo­lecu­lar level. Fron­ti­ers in Mi­cro­bi­o­logy 7. (2016) PubMed
Malik A. A., V. N. Roth, M. Hébert, L. Tremblay, T. Dittmar, and G. Gleixner: Link­ing mo­lecu­lar size, com­pos­i­tion and car­bon turnover of ex­tract­able soil mi­cro­bial com­pounds. Soil Bio­logy and Bio­chem­istry 100: 66-73. (2016) ScienceDirect
Medeiros P. M., M. Seidel, J. Niggemann, R. G. M. Spencer, P. J. Hernes, P. L. Yager, W. L. Miller, T. Dittmar, and D. A. Hansell: A novel mo­lecu­lar ap­proach for tra­cing ter­ri­gen­ous dis­solved or­ganic mat­ter into the deep ocean. Global Biogeo­chem­ical Cycles 30: 689-699. (2016) Wiley
Moran M. A., E. B. Kujawinski, A. Stubbins, R. Fatland, L. I. Aluwihare, A. Buchan, B. C. Crump, P. C. Dorrestein, S. T. Dyhrman, N. J. Hess, B. Howe, K. Longnecker, P. M. Medeiros, J. Niggemann, I. Obernosterer, D. J. Repeta, and J. R. Waldbauer: De­ci­pher­ing ocean car­bon in a chan­ging world. Pro­ceed­ings of the Na­tional Academy of Sci­ences 113: 3143-3151. (2016) PubMed
Osterholz H., D. L. Kirchman, J. Niggemann, and T. Dittmar: En­vir­on­mental drivers of dis­solved or­ganic mat­ter mo­lecu­lar com­pos­i­tion in the Delaware es­tu­ary. Fron­ti­ers in Earth Sci­ence 4: doi: 10.3389/​feart.2016.00095. (2016) Frontiers
Osterholz H., G. Singer, B. Wemheuer, R. Daniel, M. Simon, J. Niggemann, and T. Dittmar: De­ci­pher­ing as­so­ci­ations between dis­solved or­ganic mo­lecules and bac­terial com­munit­ies in a pela­gic mar­ine sys­tem. ISME Journal 10: 1717-1730. (2016) PubMed
Reyes C., O. Dellwig, K. Dähnke, M. Gehre, B. E. Noriega-Ortega, M. E. Böttcher, P. Meister, M. W. Friedrich, and T. Lueders: Bac­terial com­munit­ies po­ten­tially in­volved in iron-cyc­ling in Baltic Sea and North Sea sed­i­ments re­vealed by pyrosequen­cing. FEMS Mi­cro­bi­o­logy Eco­logy 92: fiw054-fiw054. (2016) PubMed
Riedel T., and T. K. D. Weber: The Chem­ical po­ten­tial of wa­ter in soils and sed­i­ments. Soil Sci­ence So­ci­ety of Amer­ica Journal 80: 79-83. (2016) AcsessDL
Riedel, T., M. Zark, A. V. Vähätalo, J. Niggemann, R. G. M. Spencer, P. J. Hernes, and T. Dittmar: Mo­lecu­lar sig­na­tures of biogeo­chem­ical trans­form­a­tions in dis­solved or­ganic mat­ter from ten world rivers. Fron­ti­ers in Earth Sci­ence 4: 1-16. (2016) JYX
Rossel P. E., C. Bienhold, A. Boetius, and T. Dittmar: Dis­solved or­ganic mat­ter in pore wa­ter of Arc­tic Ocean sed­i­ments: En­vir­on­mental in­flu­ence on mo­lecu­lar com­pos­i­tion. Or­ganic Geo­chem­istry 97: 41-52. (2016) ScienceDirect
Santín C., S. H. Doerr, E. S. Kane, C. A. Masiello, M. Ohlson, J. M. De La Rosa, C. M. Preston, and T. Dittmar: To­wards a global as­sess­ment of pyro­genic car­bon from ve­get­a­tion fires. Global Change Bio­logy 22: 76-91. (2016) Wiley
Schulz J., A. Mentges, and O. Zielinski: De­riv­ing im­age fea­tures for autonom­ous clas­si­fic­a­tion from time-series re­cur­rence plots. Journal of the European Op­tical So­ci­ety-Rapid Pub­lic­a­tions 12: 5. (2016) Springer
Seidel M., T. Dittmar, N. D. Ward, A. V. Krusche, J. E. Richey, P. L. Yager, and P. M. Medeiros: Sea­sonal and spa­tial vari­ab­il­ity of dis­solved or­ganic mat­ter com­pos­i­tion in the lower Amazon River. Biogeo­chem­istry 131: 281-302. (2016) Wiley
Seidel M., S. Kleindienst, T. Dittmar, S. B. Joye, and P. M. Medeiros: Bio­de­grad­a­tion of crude oil and dis­pers­ants in deep sea­wa­ter from the Gulf of Mex­ico: In­sights from ul­tra-high res­ol­u­tion mass spec­tro­metry. Deep-Sea Re­search Part II: Top­ical Stud­ies in Ocean­o­graphy 129: 108-118. (2016) ScienceDirect
Seifert A. G., V. N. Roth, T. Dittmar, G. Gleixner, L. Breuer, T. Houska, and J. Marxsen: Com­par­ing mo­lecu­lar com­pos­i­tion of dis­solved or­ganic mat­ter in soil and stream wa­ter: In­flu­ence of land use and chem­ical char­ac­ter­ist­ics. Sci­ence of the Total En­vir­on­ment 571: 142-152. (2016) PubMed
Waska H., A. Koschinsky, and T. Dittmar: Fe- and Cu-com­plex form­a­tion with ar­ti­fi­cial lig­ands in­vest­ig­ated by ul­tra-high res­ol­u­tion Four­ier-trans­form ion cyclo­tron res­on­ance mass spec­tro­metry (FT-ICR-MS): Im­plic­a­tions for nat­ural metal-or­ganic com­plex stud­ies. Fron­ti­ers in Mar­ine Sci­ence 3: 10.3389/​fmars.2016.00119. (2016) ResearchGate

Mi­cro­bial Physiology Group

Ettwig K. F., B. Zhu, D. Speth, J. T. Keltjens, M. S. M. Jetten, B. Kartal: Ar­chaea Cata­lyze Iron-De­pend­ent An­aer­obic Ox­id­a­tion of Meth­ane. Pro­ceed­ings of the Na­tional Academy of Sci­ences. 133:12792-12796 (2016) PubMed
Kartal B. and J. T. Keltjens: Anam­mox Bio­chem­istry: a Tale of Heme c Pro­teins. Trends in Bio­chem­ical Sci­ences. 41: 998-1011 (2016) PubMed
Maalcke W. J., J. Reimann, S. de Vries, J. N. Butt, A. Dietl, N. Kip, U. Mersdorf, T. R. M. Barends, M. S. M. Jetten, J. T. Keltjens and B. Kartal: Char­ac­ter­iz­a­tion of Anam­mox Hy­drazine De­hyd­ro­genase, a Key N2-Pro­du­cing En­zyme in the Global Ni­tro­gen Cycle. Journal of Bio­lo­gical Chem­istry. 291:17077-17092 (2016) PubMed
de Almeida N. M., H. J. C. T. Wessels, R. M. de Graaf, C. Ferousi, M. S. M. Jetten, J. T. Keltjens, B. Kartal: Mem­brane-Bound Elec­tron Trans­port Sys­tems of an Anam­mox Bac­terium: A Com­plex­ome Ana­lysis. Biochim­ica et Bio­phys­ica Acta. 1857: 1694-1704 (2016) PubMed

Mi­cro­sensor Group

Guilini K., M. Weber, D. de Beer, M. Schneider, M. Molari, C. Lott, W. Bodnar, T. Mascart, M. De Troch, and A. Vanreusel: The re­sponse of Posido­nia ocean­ica seagrass and its epi­biont com­munit­ies to ocean acid­i­fic­a­tion. Global Change Bio­logy, (2016) PubMed
Hassenrück C., A. Fink, A. Lichtschlag, H.E. Tegetmeyer, D. de Beer, and A. Ramette: Quan­ti­fic­a­tion of the ef­fects of ocean acid­i­fic­a­tion on sed­i­ment mi­cro­bial com­munit­ies in the en­vir­on­ment: the im­port­ance of eco­sys­tem ap­proaches. FEMS Mi­crob Ecol, 92(5): p. 0-0. (2016) PubMed
Hofmann L.C., M. Koch and D. de Beer: Bi­otic con­trol of sur­face pH and evid­ence of light-in­duced H+ pump­ing and Ca2+-H+ ex­change in a trop­ical crustose cor­al­line alga. PLoS ONE,: p. pone.0159057. (2016) PubMed
Klatt J.M., D. de Beer, S. Häusler, and L. Polerecky: Cy­anobac­teria in Sulf­idic Spring Mi­cro­bial Mats Can Per­form Oxy­genic and An­oxy­genic Pho­to­syn­thesis Sim­ul­tan­eously dur­ing an En­tire Di­urnal Period. Fron­ti­ers in Mi­cro­bi­o­logy, 7(1973). (2016) PubMed
Loudon C.M., B. Matthews, D.S. Sevilgen, and B.S. Ibelings: Ex­per­i­mental evid­ence that evol­u­tion by niche con­struc­tion af­fects dis­sip­at­ive eco­sys­tem dy­nam­ics. Evol. Ecol., 30(2): p. 221–234. (2016) Springer
Teske A., D. de Beer, L.J. McKay, M.K. Tivey, J.F. Biddle, D. Hoer, L. K.G., M.A. Lever, H. Røy, D.B. Albert, H.P. Mendlovitz, and B.J. MacGregor: The Guay­mas Basin Hik­ing Guide to Hy­dro­thermal Mounds, Chim­neys, and Mi­cro­bial Mats: Com­plex Sea­floor Ex­pres­sions of Sub­sur­face Hy­dro­thermal Cir­cu­la­tion. Front. Mi­cro­bio., 7(75): p. 1-23. (2016) PubMed
Wall M., J. Fietzke, G.M. Schmidt, F. Fink, L.C. Hofmann, D. de Beer, and K.E. Fabricius: In­ternal pH reg­u­la­tion fa­cil­it­ates in situ long-term ac­cli­ma­tion of massive cor­als to end-of-cen­tury car­bon di­ox­ide con­di­tions. Sci­entific Re­ports, (2016) nature

De­part­ment of Mi­cro­bi­o­logy

Burak A., R.L. Hahnke, M. Chafee, T. Fischer, H. Gruber-Vodicka, H.E. Tegetmeyer, J. Harder, B.M. Fuchs, R.I. Amann, H. Teeling: Ge­n­omic and physiolo­gical ana­lyses of ‘Reinekea for­setii’ re­veal a ver­sat­ile op­por­tun­istic life­style dur­ing spring al­gae blooms. En­vir­on­mental Mi­cro­bi­o­logy, in press (2016) PubMed
Marmulla R., EP Cala, S. Markert, T. Schweder and J. Harder: The an­aer­obic lin­alool meta­bol­ism in Thauera lin­aloolentis 47Lol. BMC Mi­cro­bi­o­logy 16,76, doi: 10.1186/​s12866-016-0693-8 (2016) PubMed
Marmulla R., B. Šafarić, S. Markert, T. Schweder and J. Harder: Lin­alool iso­merase, a mem­brane-anchored en­zyme in the an­aer­obic monoter­pene de­grad­a­tion in Thauera lin­aloolentis 47Lol. BMC Bio­chem­istry 17, 6, doi: 10.1186/​s12858-016-0062-0. (2016) BioMed
Panschin I., M. Becher; S. Verbarg, C. Spröer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, R.L. Hahnke: De­scrip­tion of Gramella for­setii sp. nov., a mar­ine Fla­vobac­teri­aceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of Gramella gaet­bulic­ola Cho et al. 2011. Int J Syst Evol Mi­cro­biol. 2016 Nov 28. doi: 10.1099/​ijsem.0.001700. [Epub ahead of print] (2016) PubMed
Weidenweber S., R. Marmulla, U. Ermler and J. Harder: X-ray struc­ture of lin­alool de­hyd­ratase/​iso­merase from Cas­tel­lani­ella de­fra­grans re­veals en­zymatic al­kene syn­thesis. FEBS Let­ters 590, 1375-1383, doi: 10.1002/​1873-3468.12165 (2016) PubMed
Žure M. A. Fernandez-Guerra, C.B. Munn, J. Harder: Geo­graphic dis­tri­bu­tion at sub­spe­cies res­ol­u­tion level: closely re­lated Rhodopirellula spe­cies in European coastal sed­i­ments. ISME J. 2016 Nov 1. doi: 10.1038/​is­mej.2016.123. [Epub ahead of print] (2016) PubMed
Bachelor theses / Master theses
Scilipoti Stefano: Charak­ter­iz­a­tion of a novel lin­alool-meta­bol­iz­ing en­zyme in Cas­tel­lani­ella de­fra­grans 65Phen. Mas­ter thesis, Uni­versity Trieste (2016)
Talitha Bendig Nora: Charak­ter­is­ier­ung eines RND-Trans­port­ers in Cas­tel­lani­ella de­fra­grans 65Phen. Bach­elor thesis, Uni­versity Bre­men (2016)
Resteu Anastasia: The bio­logy of can­did­ate di­vison OP3. Mas­ter thesis, marmic, Uni­versity Bre­men (2016)
Tebeka Nchimunya Nelisa: Par­tial char­ac­ter­iz­a­tion of a novel lin­alool meta­bol­iz­ing en­zyme of Cas­tel­lani­ella de­fra­grans 65Phen. Mas­ter thesis, marmic, Uni­versity Bre­men (2016)
Stenhorst Sarah: Het­ero­loge Ex­pres­sion von Pro­teinen aus Cas­tel­lani­ella de­fra­grans 65Phen. Bach­elor thesis, Hoch­schule Em­den/​Leer (2016)

Sym­bi­ose Pub­lika­tionen

Assié A, Borowski C, van der Heijden K, Raggi L, Geier B, Leisch N, Schimak MP, Dubilier N, Petersen MP.: A spe­cific and wide­spread as­so­ci­ation between deep-sea Ba­thymo­di­olus mus­sels and a novel fam­ily of Ep­si­lon­pro­teo­bac­teria. En­vir­on­mental Mi­cro­bi­o­logy Re­ports. doi:10.1111/​1758-2229.12442 (2016) PubMed
Avci B, Hahnke RL, Chafee M, Fischer T, Gruber-Vodicka H, Tegetmeyer HE, Harder J, Fuchs BM, Amann RI, Teeling H.: Ge­n­omic and physiolo­gical ana­lyses of 'Reinekea for­setii' re­veal a ver­sat­ile op­por­tun­istic life­style dur­ing spring al­gae blooms. En­vir­on­mental Mi­cro­bi­o­logy. doi: 10.1111/​1462-2920.13646 (2016) PubMed
Berg JS, Michellod D, Pjevac P, Martinez‐Perez C, Buckner CR, Hach PF, Schubert CJ, Milucka J, Kuypers MM.: In­tens­ive cryptic mi­cro­bial iron cyc­ling in the low iron wa­ter column of the meromictic Lake Cadagno. En­vir­on­mental Mi­cro­bi­o­logy 18: 5288-5302. (2016) PubMed
Breusing C, Biastoch A, Drews A, Metaxas A, Jollivet D, Vrijenhoek RC, Bayer T, Melzner F, Sayavedra L, Petersen JM, Dubilier N, Shilhabel MB, Rosenstiel P, Reusch TBH.: Bio­phys­ical and pop­u­la­tion ge­netic mod­els pre­dict the pres­ence of ‘phantom’ step­ping stones con­nect­ing Mid-At­lantic Ridge vent eco­sys­tems. Cur­rent Bio­logy 26: 2257–2267. (2016) PubMed
Hamann E, Gruber-Vodicka H, Kleiner M, Tegetmeyer HE, Riedel D, Littmann S, Chen J, Milucka J, Viehweger B, Becker KW, Dong X, Stairs CW, Hinrichs KU, Brown MW, Roger AJ, Strous M.: En­vir­on­mental Brevi­atea har­bour mu­tu­al­istic Ar­co­bac­ter epi­bionts. Nature 534: 254-258. (2016) PubMed
Hao J, Liebeke M, Sommer U, Viant M, Ebbels T, Bundy JG.: Stat­ist­ical cor­rel­a­tions between NMR spec­tro­scopy and dir­ect in­fu­sion FT-ICR mass spec­tro­metry aid an­nota­tion of un­knowns in meta­bolo­m­ics. Ana­lyt­ical Chem­istry 88: 2583-2589 (2016) PubMed
Kreutzmann A-C, Schulz-Vogt HN.: Ox­id­a­tion of mo­lecu­lar hy­dro­gen by a chemo­lithoauto­trophic Beg­gia­toa strain. Ap­plied En­vir­on­mental Mi­cro­bi­o­logy 82:2527–2536. (2016) ASM
Krukenberg V, Harding K, Richter M, Glockner FO, Gruber-Vodicka HR, Adam B, Berg JS, Knittel K, Tegetmeyer HE, Boetius A, Wegener G.: Can­did­atus Des­ulfofer­vidus aux­ilii, a hy­dro­geno­trophic sulfate-re­du­cing bac­terium in­volved in the ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane. En­vir­on­mental Mi­cro­bi­o­logy 18: 3073-3091. (2016) PubMed
Lehnen N, Marchant H, Schwedt A, Milucka J, Lott C, Weber M, Dekaezemacker J, Seah BKB, Hach PF, Mohr W, Kuypers MMM.: High rates of mi­cro­bial dinitro­gen fix­a­tion and sulfate re­duc­tion as­so­ci­ated with the Medi­ter­ranean seagrass Posido­nia ocean­ica. Sys­tem­atic and Ap­plied Mi­cro­bi­o­logy 39: 476-483. doi: 10.1016/​j.syapm.2016.08.004 (2016) PubMed
Leisch N, Pende N, Weber PM, Gruber-Vodicka HR, Verheul J, Vischer NO, Abby SS, Geier B, den Blaauwen T, Bulgheresi S.: Asyn­chron­ous di­vi­sion by non-ring FtsZ in the gammapro­teo­bac­terial sym­biont of Rob­bea hy­perm­nes­tra. Nature Mi­cro­bi­o­logy 2:16182. 10.1038/​nmi­cro­biol.2016.182 (2016) nature
Meier DV, Bach W, Girguis PR, Gruber-Vodicka HR, Reeves EP, Richter M, Vidoudez C, Amann R, Meyerdierks A.: Het­ero­trophic Pro­teo­bac­teria in the vi­cin­ity of dif­fuse hy­dro­thermal vent­ing. En­vir­on­mental Mi­cro­bi­o­logy 18: 4348-4368. (2016) PubMed
Montanaro J, Gruber D, Leisch N.: Im­proved ul­tra­struc­ture of mar­ine in­ver­teb­rates us­ing non-toxic buf­fers. PeerJ 4:e1860. DOI 10.7717/​peerj.1860 (2016) PubMed
Okamura B, Gruhl A.: Myxo­zoa + Poly­po­dium: A com­mon route to en­do­pa­ra­sit­ism. Trends in Para­sit­o­logy, 32 (4), 268-271 doi:10.1016/​j.pt.2016.01.007 (2016) PubMed
Petersen JM, Kemper A, Gruber-Vodicka H, Cardini U, van der Geest M, Kleiner M, Bulgheresi S, Mußmann M, Herbold C, Seah BKB, Antony CP, Liu D, Belitz A, Weber M.: Chemo­syn­thetic sul­phur-ox­id­iz­ing sym­bionts of mar­ine in­ver­teb­rate an­im­als are cap­able of ni­tro­gen fix­a­tion. Nature Mi­cro­bi­o­logy, 2: 16195. doi: 10.1038/​nmi­cro­biol.2016.195 (2016) PubMed
Sahling H, Borowski C, Escobar-Briones E, Gaytán-Caballero A, Hsu C-W, Loher M, MacDonald, I, Marcon, Y, Pape, T, Römer, M, Rubin-Blum, M, Schubotz, F, Smrzka, D, Wegener, G, Bohrmann, G.: Massive as­phalt de­pos­its, oil seep­age, and gas vent­ing sup­port abund­ant chemo­syn­thetic com­munit­ies at the Campeche Knolls, south­ern Gulf of Mex­ico. Biogeosciences 13: 4491–4512. (2016) AWI
Spurgeon DJ, Liebeke M, Kille P, Anderson C, Lawlor A, Bundy JG, Lahive E.: Eco­lo­gical drivers in­flu­ence the dis­tri­bu­tions of two cryptic lin­eages in an earth­worm morpho­s­pe­cies. Ap­plied Soil Eco­logy 108, 8-15 (2016) ScienceDirect
Wippler J, Kleiner M, Lott C, Gruhl A, Abraham PE, Giannone RJ, Young JC, Hettich RL, Dubilier N.: Tran­scrip­tomic and pro­teo­mic in­sights into in­nate im­munity and ad­apt­a­tions to a sym­bi­otic life­style in the gut­less mar­ine worm Olavius al­gar­ven­sis. BMC Ge­n­om­ics 17:942. doi: 10.1186/​s12864-016-3293-y (2016) PubMed
Zimmermann J, Wentrup C, Sadowski M, Blazejak A, Gruber-Vodicka HR, Kleiner M, Ott JA, Cronholm B, De Wit P, Erseus C, Dubilier N.: Closely coupled evol­u­tion­ary his­tory of ecto- and en­dosym­bionts from two dis­tantly re­lated an­imal phyla. Mo­lecu­lar Eco­logy 25: 3203-3223 (2016) PubMed
Master Thesis
Pierre Methou: “Ex­pres­sion of Olavius al­gar­ven­sis res­pir­at­ory pig­ments re­vealed through mRNA whole-mount in situ hy­brid­iz­a­tion”. Mas­ter Sci­ences de l’Univers, En­viron­nement, Eco­lo­gie Spé­ci­al­ité: Eco­Physiolo­gie et Eco­Tox­ic­o­lo­gie. (2016)
Dolma Michellod: "Meta­bolic ana­lyses of sym­bi­oses between chemoauto­trophic bac­teria and mar­ine in­ver­teb­rates". In­ter­na­tional Max Planck Re­search School for Mar­ine Mi­cro­bi­o­logy, Uni­versity of Bre­men. (2016)
PhD Thesis
Lizbeth Sayavedra Camacho: "Host-sym­biont in­ter­ac­tions and meta­bol­ism of chemo­syn­thetic sym­bi­osis in deep-sea Ba­thymo­di­olus mus­sels". In­ter­na­tional Max Planck Re­search School for Mar­ine Mi­cro­bi­o­logy. Uni­versity of Bre­men. (2016)
Adrien Assié: “Deep se(a)quen­cing: A study of deep-sea ec­tosym­bi­oses us­ing next gen­er­a­tion se­quen­cing". In­ter­na­tional Max Planck Re­search School for Mar­ine Mi­cro­bi­o­logy. Uni­versity of Bre­men. (2016)
Juliane Wippler: “Char­ac­ter­iz­a­tion of host-sym­biont mo­lecu­lar in­ter­ac­tions and evol­u­tion­ary re­la­tion­ships in the gut­less oli­go­chaete Olavius al­gar­ven­sis". In­ter­na­tional Max Planck Re­search School for Mar­ine Mi­cro­bi­o­logy. Uni­versity of Bre­men. (2016)
Mario Schimak: "Trans­mis­sion of bac­terial sym­bionts in the gut­less oli­go­chaete Olavius al­gar­ven­sis". In­ter­na­tional Max Planck Re­search School for Mar­ine Mi­cro­bi­o­logy, Uni­versity of Bre­men. (2016)
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