Publications 2012

Alonso C., Musat N., Adam B., Kuypers M., and Amann R. (2012). HISH-SIMS analysis of bacterial uptake of algal-derived carbon in the Rio de la Plata estuary. Syst. Appl. Microbiol. 35:541-548. [PMID:23026312]

Arnosti C., Fuchs B.M., Amann R., and Passow U. (2012). Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean. Front. Aquat. Microbiol. 425:1-9. [fam page]

Beutler M., Milucka J., Hinck S., Schreiber F., Brock J., Mußmann M., Schulz-Vogt H.N., and de Beer D. (2012). Vacuolar respiration of nitrate coupled to energy conservation in filamentous Beggiatoaceae. Environ. Microbiol. 14:2911–2919. [PMID:22925165]

Bulgarelli D., Rott M., Schlaeppi K., van Themaat E.V.L., Ahmadinejad N., Assenza F., Rauf P., Huettel B., Reinhardt R., Schmelzer E., Peplies J., Gloeckner F.O., Amann R., Eickhorst T., and Schulze-Lefert P. (2012). Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature 488:91-95. [PMID:22859207]

Ferrer M., Werner J., Chernikova T.N., Bargiela R., Fernández L., La Cono V., Waldmann J., Teeling H., Golyshina O.V., Glöckner F.O., Yakimov M.M., Golyshin P.N., the MAMBA Scientific Consortium. (2012). Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. Environ. Mircobiol. 14:268-28. [PMID:22040283]

Grote J., Bruckner C.G., Glöckner F.O., Jost G., Teeling H., Labrenz M., Jürgens K. (2012). Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc. Natl. Acad. Sci. 109:506-510. [PMID:22203982]

Gómez-Pereira P.R., Schüler M., Fuchs B.M., Bennke C., Teeling H., Waldmann J., Richter M., Barbe V., Bataille E., Glöckner F.O., Amann R. (2012). Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean. Environ. Microbiol. 14:52-66. [PMID:21895912]

Golyshin P.N., Leggewie C., Jaeger, K.E., Teeling H., Glöckner F.O. (2012) Biotechnologie aus dem Mittelmeer. Laborwelt 13:18-19.

Hill P.G., Heywood J.L., Holland R.J., Purdie D.A., Fuchs B.M., and Zubkov M.V. (2012). Internal and external influences on near-surface microbial community structure in the vicinity of the Cape Verde Islands. Microbial Ecology 63:139-148. [PMID:21994033]

Kellermann M.Y., Wegener G., Elvert M., Yoshinaga M.Y., Lin Y.-S., Holler T., Mollar X.P., Knittel K., Hinrichs K.-U. (2012). Autotrophy as a predominant mode of carbon fixation in anaerobic methane-oxidizing microbial communities. PNAS 109:19321-19326. [PMID:23129626]

Kleiner M., Wentrup C., Lott C., Teeling H., Wetzel S., Young J., Chang Y.J., Shah M., VerBerkmoes N.C., Zarzycki J., Fuchs G., Markert S., Hempel K., Voigt B., Becher D., Liebeke M., Lalk M., Albrecht D., Hecker M., Schweder T., Dubilier N. (2012) Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. PNAS 109:E1173-82. [PMID: 22517752]

Kleindienst S., Ramette A., Amann R., Knittel K. (2012). Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments. Environ. Microbiol. 14:2689-2710. [PMID:22882476]

Kojima H., Tsutsumi M., Ishikawa K., Iwata T., Mußmann M., and Fukui M. (2012). Distribution of putative denitrifying methane oxidizing bacteria in sediment of a freshwater lake, Lake Biwa. Syst. Appl. Microbiol. 35:233-238. [PMID:22504019]

Kubo K., Lloyd K.G., Biddle J., Amann R., Teske A., and Knittel K. (2012). Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse, and widespread in marine sediments. ISME J. 6:1949-1965. [PMID:22551871]

Lenk S., Moraru C., Hahnke S., Arnds J., Richter M., Kube M., Reinhardt R., Brinkhoff T., Harder J., Amann R., and Mußmann M. (2012). Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME J. 6:2178-87. [PMID:22739490]

Morau C., and Amann R. (2012). Crystal ball: fluorescence in situ hybridization in the age of super-resolution microscopy. Syst. Appl. Microbiol. 35:549-552. [PMID:23140662]

Oberbeckmann S., Fuchs B.M., Meiners M., Wichels A., Wiltshire K.H., and Gerdts G. (2012). Seasonal dynamics and modeling of a Vibrio community in coastal waters of the North Sea. Microb. Ecol. 63:543-55. [PMID:22202887]

Petersen J.M., Wentrup C., Verna C., Knittel K., and Dubilier N. (2012). Origins and evolutionary flexibility of chemosynthetic symbionts from deep-sea animals. Biological Bulletin 223:123-137. [PMID:22983038]

Pizzetti I., Fazi S., Fuchs B.M., and Amann R. (2012). High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy). Environ. Microbiol. Rep. 4:446-452. [PMID:23760831]

Salman V., Amann R., Shub D.A., and Schulz-Vogt H.N. (2012). Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria. Proc. Natl. Acad. Sci. 109:4203-4208. [PMID:22371583]

Sánchez-Andrea I., Knittel K., Amann R., Amils R., Sanz J. (2012). Quantification of Tinto River sediment microbial communities: the importance of sulfate-reducing bacteria and their role in attenuating acid mine drainage. Appl. Environ. Microbiol. 78:4638-4645. [PMID:22544246]

Schmitt H., Eickhorst T., and Mußmann M. (2012). Gold-FISH: A new approach for the in situ detection of prokaryotes combining fluorescence and scanning electron microscopy. Syst. Appl. Microbiol. 35:518-525. [PMID:22770611]

Teeling H., Fuchs B.M., Becher D., Klockow C., Gardebrecht A., Bennke C.M., Kassabgy M., Huang S., Mann A.J., Waldmann J., Weber M., Klindworth A., Otto A., Lange L., Bernhardt J., Reinsch C., Hecker M., Peplies J., Bockelmann F.D., Callies U., Gerdts G., Wichels A., Wiltshire K.H., Glöckner F.O., Schweder T., and Amann R. (2012). Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336:608-611. [PMID:22556258]

Teeling H., Glöckner F.O. (2012) Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective. Brief. Bioinform. [DOI:10.1093/bib/bbs039]

Thiele S., Fuchs B.M., Ramaiah N., and Amann R. (2012). Microbial community response during the iron fertilization experiment LOHAFEX. Appl. Environ. Microbiol. 78:8803-8812. [PMID:23064339]

Voigt B., Hieu C.X., Hempel K., Becher D., Schlüter R., Teeling H., Glöckner F.O., Amann R., Hecker M., Schweder T. (2012) Cell surface proteome of the marine planctomycete Rhodopirellula baltica. Proteomics 12: 1781-91. [PMID:22623273]